Wall clock time and date at job start Tue Mar 31 2020 20:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 120.00092 * 2 1 4 4 O 1.21619 * 120.00033 * 185.98285 * 3 2 1 5 5 C 1.47251 * 120.00083 * 5.98316 * 3 2 1 6 6 N 1.30550 * 125.54327 * 187.02646 * 5 3 2 7 7 C 1.30707 * 115.90933 * 180.02562 * 6 5 3 8 8 C 1.34235 * 115.78047 * 359.97438 * 7 6 5 9 9 S 1.71076 * 109.09189 * 359.72858 * 8 7 6 10 10 C 1.46507 * 119.99746 * 179.97438 * 2 1 3 11 11 H 1.08995 * 110.28501 * 180.67390 * 10 2 1 12 12 C 1.54263 * 110.32419 * 58.55139 * 10 2 1 13 13 C 1.54384 * 105.05786 * 241.00046 * 12 10 2 14 14 N 1.48558 * 104.59155 * 336.14436 * 13 12 10 15 15 C 1.46909 * 110.99718 * 159.04186 * 14 13 12 16 16 C 1.50697 * 109.47178 * 74.58018 * 15 14 13 17 17 O 1.21293 * 119.99763 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00458 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00519 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00229 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00150 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00041 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47102 * 60.00195 * 23 21 19 25 25 H 1.48504 * 109.47376 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47342 * 300.00540 * 23 21 19 27 27 C 1.48557 * 104.22294 * 39.48820 * 14 13 12 28 28 H 1.09001 * 109.47078 * 275.98692 * 1 2 3 29 29 H 1.08996 * 109.47033 * 35.99179 * 1 2 3 30 30 H 1.09005 * 109.47085 * 155.98533 * 1 2 3 31 31 H 1.08001 * 122.10924 * 180.02562 * 7 6 5 32 32 H 1.07999 * 125.45262 * 180.02562 * 8 7 6 33 33 H 1.08996 * 110.32095 * 359.89229 * 12 10 2 34 34 H 1.08993 * 110.32317 * 122.10287 * 12 10 2 35 35 H 1.08997 * 110.41134 * 94.92128 * 13 12 10 36 36 H 1.09002 * 110.40850 * 217.36912 * 13 12 10 37 37 H 1.09000 * 109.46795 * 194.58035 * 15 14 13 38 38 H 1.08998 * 109.46939 * 314.58239 * 15 14 13 39 39 H 0.97009 * 119.99839 * 0.02562 * 18 16 15 40 40 H 0.96993 * 120.00481 * 179.97438 * 22 21 19 41 41 H 1.09004 * 110.40838 * 201.73465 * 27 14 13 42 42 H 1.09002 * 110.41530 * 79.29194 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1700 -0.1098 5 6 1.4087 2.4390 0.1329 6 7 1.9312 3.6297 0.0172 7 6 1.1072 4.6325 0.1720 8 6 -0.1689 4.3051 0.4292 9 16 -0.3129 2.6008 0.4659 10 6 2.1975 -1.2688 0.0006 11 1 3.2718 -1.0850 0.0125 12 6 1.8118 -2.1107 -1.2332 13 6 1.2004 -3.4069 -0.6590 14 7 1.7790 -3.5217 0.7044 15 6 0.9541 -4.3900 1.5551 16 6 1.1632 -5.8284 1.1571 17 8 1.9249 -6.1031 0.2540 18 7 0.5039 -6.8094 1.8045 19 6 0.6945 -8.1180 1.4428 20 1 1.3733 -8.3628 0.6393 21 6 0.0151 -9.1295 2.1107 22 7 -0.8105 -8.8318 3.0888 23 14 0.2743 -10.9124 1.6174 24 1 1.7058 -11.2696 1.7862 25 1 -0.5601 -11.7902 2.4768 26 1 -0.1171 -11.0948 0.1966 27 6 1.7868 -2.1271 1.2162 28 1 -0.3633 0.1072 1.0221 29 1 -0.3633 0.8315 -0.6039 30 1 -0.3633 -0.9388 -0.4182 31 1 1.4324 5.6596 0.0969 32 1 -0.9765 5.0055 0.5831 33 1 1.0761 -1.5808 -1.8381 34 1 2.6967 -2.3401 -1.8267 35 1 0.1149 -3.3239 -0.6055 36 1 1.4876 -4.2646 -1.2673 37 1 1.2415 -4.2561 2.5979 38 1 -0.0966 -4.1278 1.4311 39 1 -0.1056 -6.5897 2.5265 40 1 -1.2851 -9.5378 3.5548 41 1 2.5155 -2.0212 2.0200 42 1 0.7930 -1.8438 1.5632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698571647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:27 Heat of formation + Delta-G solvation = 8.504774 kcal Electronic energy + Delta-G solvation = -26394.634961 eV Core-core repulsion = 22502.732408 eV Total energy + Delta-G solvation = -3891.902552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80940 -39.85281 -38.73436 -37.56391 -35.52055 -33.88564 -31.92099 -31.20044 -30.66191 -28.87554 -27.68222 -27.13395 -25.90598 -24.24584 -22.73531 -21.29540 -20.31873 -19.72290 -19.22073 -18.80698 -17.88526 -17.16983 -16.85111 -16.26063 -15.96580 -15.81097 -15.20967 -14.86621 -14.62107 -14.46742 -14.34999 -13.92308 -13.82979 -13.71579 -13.45442 -13.35158 -13.15057 -12.77131 -12.25786 -12.09110 -11.71845 -11.51888 -11.49933 -11.30540 -11.20218 -10.98164 -10.84411 -10.62695 -10.44510 -10.21642 -10.13424 -10.02944 -9.48916 -9.36592 -9.08853 -8.56149 -8.06388 -7.95671 -6.41937 -3.82634 -0.19499 0.71435 1.21041 1.94575 2.25777 2.82984 3.19936 3.25613 3.30047 3.68720 3.89739 4.02240 4.25440 4.37227 4.46977 4.51812 4.60008 4.64981 4.85854 4.90231 4.97677 5.12342 5.15345 5.23013 5.24709 5.29693 5.54780 5.59877 5.67880 5.72675 5.81708 5.87516 5.99713 6.15698 6.25654 6.32234 6.75372 7.02092 7.11758 7.16440 7.54877 7.66075 8.05747 8.61724 9.18161 9.54220 10.06350 10.75814 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031464 B = 0.002038 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.693891 B =13735.715803 C =14237.826302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.599 5.599 3 C 0.595 3.405 4 O -0.496 6.496 5 C -0.009 4.009 6 N -0.399 5.399 7 C 0.026 3.974 8 C -0.287 4.287 9 S 0.205 5.795 10 C 0.140 3.860 11 H 0.118 0.882 12 C -0.134 4.134 13 C 0.037 3.963 14 N -0.480 5.480 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.021 3.979 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.089 0.911 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 25.117 -3.499 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.333 5.333 3 C 0.378 3.622 4 O -0.369 6.369 5 C -0.285 4.285 6 N -0.115 5.115 7 C -0.130 4.130 8 C -0.427 4.427 9 S 0.460 5.540 10 C 0.037 3.963 11 H 0.136 0.864 12 C -0.172 4.172 13 C -0.090 4.090 14 N -0.204 5.204 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.459 6.459 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.108 4.108 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.194 0.806 32 H 0.199 0.801 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.066 23.900 -3.996 24.570 hybrid contribution -1.218 0.760 0.423 1.497 sum -5.284 24.660 -3.573 25.472 Atomic orbital electron populations 1.22054 0.79889 1.04158 1.02928 1.47692 1.06768 1.05540 1.73307 1.16715 0.86457 0.81288 0.77694 1.90871 1.12615 1.85815 1.47565 1.27511 0.93763 0.96670 1.10547 1.66604 1.35932 0.97486 1.11443 1.21834 0.88446 0.99705 1.03002 1.27271 1.02804 1.03657 1.09007 1.84436 1.09724 0.98420 1.61433 1.21975 0.98346 0.80612 0.95320 0.86418 1.22738 1.02159 0.95433 0.96915 1.23187 0.96180 0.98326 0.91346 1.65116 1.48116 1.05370 1.01800 1.22060 0.95436 0.93950 0.98161 1.19667 0.85175 0.85935 0.86215 1.90518 1.39504 1.83418 1.32473 1.41848 1.39854 1.05846 1.32711 1.19641 1.24592 0.81184 1.17341 0.87975 1.25253 0.96239 1.00470 0.96017 1.69597 1.28022 1.34297 1.22540 0.85922 0.78412 0.81502 0.78408 1.19881 1.21018 1.19945 1.23493 1.00895 0.89220 0.97173 0.91008 0.90619 0.88212 0.80585 0.80102 0.90793 0.89652 0.94283 0.88151 0.89240 0.93109 0.77550 0.91856 0.89288 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 7.29 59.85 0.44 0.79 16 2 N -0.60 -5.96 2.79 -173.68 -0.49 -6.44 16 3 C 0.60 7.38 7.65 -12.60 -0.10 7.28 16 4 O -0.50 -8.07 16.45 5.26 0.09 -7.99 16 5 C -0.01 -0.10 7.20 -14.44 -0.10 -0.20 16 6 N -0.40 -4.67 10.60 -11.51 -0.12 -4.79 16 7 C 0.03 0.21 11.24 -19.44 -0.22 -0.01 16 8 C -0.29 -1.69 11.09 29.32 0.33 -1.36 16 9 S 0.21 1.27 18.06 -107.50 -1.94 -0.68 16 10 C 0.14 1.61 3.44 -66.55 -0.23 1.38 16 11 H 0.12 1.55 6.98 -51.93 -0.36 1.19 16 12 C -0.13 -1.51 6.13 -25.34 -0.16 -1.67 16 13 C 0.04 0.53 5.92 -2.18 -0.01 0.52 16 14 N -0.48 -7.51 4.98 -231.41 -1.15 -8.66 16 15 C 0.04 0.60 5.32 -4.97 -0.03 0.58 16 16 C 0.45 10.22 7.63 -10.99 -0.08 10.13 16 17 O -0.58 -15.26 14.80 5.55 0.08 -15.18 16 18 N -0.57 -14.02 5.29 -10.97 -0.06 -14.08 16 19 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 23 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.02 0.26 6.06 -2.19 -0.01 0.24 16 28 H 0.07 0.37 7.47 -51.93 -0.39 -0.01 16 29 H 0.08 0.40 5.13 -27.82 -0.14 0.26 16 30 H 0.10 0.59 6.94 -51.93 -0.36 0.23 16 31 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.07 0.69 7.07 -51.93 -0.37 0.33 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.50 7.75 -51.93 -0.40 0.09 16 36 H 0.10 1.73 7.24 -51.93 -0.38 1.35 16 37 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 38 H 0.05 0.75 7.77 -51.93 -0.40 0.35 16 39 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.49 6.88 -51.93 -0.36 0.14 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -34.66 358.12 -8.01 -42.68 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.10 Total: 7.57 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -0.42 Total: 9.83 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -1.09 Total: -57.48 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.94 Total: -0.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.66 -8.01 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698571647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.183 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds