Wall clock time and date at job start Tue Mar 31 2020 20:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34773 * 120.00180 * 2 1 4 4 O 1.21568 * 119.99619 * 175.94793 * 3 2 1 5 5 C 1.47710 * 120.00169 * 355.94753 * 3 2 1 6 6 C 1.41503 * 126.51918 * 186.02990 * 5 3 2 7 7 C 1.35368 * 105.50235 * 180.02562 * 6 5 3 8 8 N 1.35034 * 107.22896 * 359.97438 * 7 6 5 9 9 H 0.97003 * 124.88193 * 180.02562 * 8 7 6 10 10 N 1.28470 * 110.23075 * 359.72638 * 8 7 6 11 11 C 1.46499 * 119.99371 * 180.02562 * 2 1 3 12 12 C 1.53784 * 113.61620 * 299.99266 * 11 2 1 13 13 C 1.53785 * 87.07801 * 89.20305 * 12 11 2 14 14 N 1.46499 * 113.61273 * 139.97944 * 13 12 11 15 15 C 1.34780 * 120.00005 * 156.53045 * 14 13 12 16 16 O 1.21282 * 119.99867 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99933 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.46963 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99958 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99885 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00038 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00072 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00098 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47132 * 59.99484 * 23 21 19 25 25 H 1.48503 * 109.46911 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46992 * 299.99613 * 23 21 19 27 27 C 1.53776 * 87.17257 * 25.39270 * 13 12 11 28 28 H 1.09000 * 109.46807 * 275.29048 * 1 2 3 29 29 H 1.08999 * 109.46965 * 35.28110 * 1 2 3 30 30 H 1.08996 * 109.47286 * 155.28831 * 1 2 3 31 31 H 1.07998 * 127.24933 * 0.02562 * 6 5 3 32 32 H 1.07995 * 126.38345 * 179.97438 * 7 6 5 33 33 H 1.09005 * 112.84868 * 168.80314 * 11 2 1 34 34 H 1.09002 * 113.61203 * 334.65909 * 12 11 2 35 35 H 1.08995 * 113.61637 * 203.75315 * 12 11 2 36 36 H 1.08998 * 113.61761 * 270.80007 * 13 12 11 37 37 H 0.97000 * 120.00213 * 336.25922 * 14 13 12 38 38 H 1.08998 * 109.47625 * 299.99996 * 17 15 14 39 39 H 1.09010 * 109.47310 * 60.00222 * 17 15 14 40 40 H 0.97000 * 120.00058 * 180.02562 * 22 21 19 41 41 H 1.09003 * 113.61883 * 89.15471 * 27 13 12 42 42 H 1.09003 * 113.61744 * 220.05703 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3524 1.1683 0.0744 5 6 1.4033 2.4448 -0.0904 6 6 1.9694 3.7350 -0.2211 7 6 0.9193 4.5882 -0.2641 8 7 -0.2039 3.8453 -0.1650 9 1 -1.1064 4.2009 -0.1692 10 7 0.0944 2.5993 -0.0707 11 6 2.1974 -1.2688 -0.0006 12 6 1.8954 -2.1550 1.2194 13 6 0.7454 -2.7596 0.3966 14 7 0.6012 -4.2077 0.5654 15 6 -0.5842 -4.8001 0.3194 16 8 -1.5313 -4.1344 -0.0422 17 6 -0.7327 -6.2896 0.4936 18 16 -2.4278 -6.7783 0.0890 19 6 -2.3214 -8.5143 0.3712 20 1 -1.3892 -8.9524 0.6960 21 6 -3.4352 -9.3189 0.1751 22 7 -4.5712 -8.7850 -0.2213 23 14 -3.3222 -11.1594 0.4736 24 1 -2.9436 -11.4092 1.8876 25 1 -4.6388 -11.7877 0.1956 26 1 -2.2946 -11.7444 -0.4247 27 6 1.5369 -2.3618 -0.8603 28 1 -0.3633 0.0948 1.0233 29 1 -0.3633 0.8389 -0.5936 30 1 -0.3633 -0.9335 -0.4296 31 1 3.0184 3.9862 -0.2753 32 1 0.9704 5.6627 -0.3597 33 1 3.2625 -1.1427 -0.1956 34 1 1.5603 -1.5959 2.0930 35 1 2.6886 -2.8663 1.4495 36 1 -0.1980 -2.2247 0.5060 37 1 1.3598 -4.7407 0.8505 38 1 -0.0383 -6.8042 -0.1706 39 1 -0.5136 -6.5582 1.5271 40 1 -5.3498 -9.3472 -0.3580 41 1 2.2320 -3.1297 -1.1999 42 1 0.9130 -1.9694 -1.6633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701908036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:21 Heat of formation + Delta-G solvation = 20.536331 kcal Electronic energy + Delta-G solvation = -25819.724664 eV Core-core repulsion = 21928.343839 eV Total energy + Delta-G solvation = -3891.380825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.61396 -41.74984 -40.37884 -39.03507 -35.86066 -34.57736 -34.12114 -32.65016 -31.63433 -30.67386 -28.39613 -27.66186 -26.78112 -26.15815 -23.94221 -22.71343 -21.76412 -21.28039 -20.04025 -19.63910 -19.28959 -18.31257 -17.82212 -17.37234 -17.01145 -16.98913 -16.86797 -16.41066 -15.95182 -15.84028 -15.59707 -14.77141 -14.67976 -14.53986 -14.36343 -14.13266 -14.09306 -13.86125 -13.46256 -13.31155 -13.17005 -13.14922 -12.93972 -12.86080 -12.60089 -12.02713 -11.78435 -11.65051 -11.55239 -11.13141 -11.12065 -10.87863 -10.45785 -10.26461 -10.15862 -10.03700 -9.71164 -8.64999 -8.33658 -6.11362 0.47912 1.23458 1.28314 1.44372 1.47817 1.57815 1.62312 1.71210 2.20545 2.27066 2.27589 2.34348 3.00315 3.26893 3.33720 3.39715 3.55902 3.80675 3.96053 3.97283 4.02543 4.17330 4.22552 4.33409 4.51392 4.54640 4.64346 4.69891 4.70536 4.76568 4.81109 4.83967 4.95322 4.97428 5.10615 5.32842 5.42613 5.48074 5.62209 6.13130 6.20547 6.27116 6.55376 6.81493 7.05802 7.07619 7.27975 8.75198 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.001875 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.715853 B =14932.151509 C =15702.492473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.584 5.584 3 C 0.599 3.401 4 O -0.567 6.567 5 C -0.044 4.044 6 C -0.208 4.208 7 C 0.016 3.984 8 N -0.371 5.371 9 H 0.463 0.537 10 N -0.270 5.270 11 C 0.120 3.880 12 C -0.138 4.138 13 C 0.108 3.892 14 N -0.701 5.701 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.131 4.131 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.232 0.768 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.417 0.583 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.116 0.884 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.161 26.079 1.470 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.314 5.314 3 C 0.387 3.613 4 O -0.445 6.445 5 C -0.202 4.202 6 C -0.236 4.236 7 C -0.129 4.129 8 N -0.087 5.087 9 H 0.312 0.688 10 N -0.108 5.108 11 C 0.015 3.985 12 C -0.177 4.177 13 C 0.003 3.997 14 N -0.354 5.354 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.282 4.282 18 S 0.077 5.923 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.192 4.192 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.181 0.819 32 H 0.248 0.752 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.255 0.745 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.093 26.543 0.956 29.612 hybrid contribution 1.203 -1.449 0.514 1.952 sum 14.296 25.095 1.470 28.919 Atomic orbital electron populations 1.22419 0.77765 1.04468 1.03102 1.47463 1.07846 1.04787 1.71354 1.17293 0.85880 0.82496 0.75650 1.90746 1.14182 1.87255 1.52345 1.21865 0.90562 0.95360 1.12461 1.22039 1.01779 0.90250 1.09510 1.23579 0.84394 1.00952 1.03939 1.43698 1.11300 1.03035 1.50655 0.68828 1.73670 1.15713 1.01692 1.19718 1.21861 0.97415 0.81845 0.97340 1.23736 0.98064 0.98623 0.97254 1.22999 0.99324 0.80352 0.97027 1.45751 1.11980 1.08439 1.69272 1.20083 0.82976 0.88962 0.75869 1.90678 1.40473 1.66020 1.47056 1.23392 1.03016 0.95341 1.06469 1.85546 1.09539 1.08013 1.89233 1.23183 1.00626 0.92604 1.53114 0.89926 1.26120 0.93936 1.05103 0.94000 1.70175 1.01893 1.38206 1.44460 0.85016 0.77841 0.75895 0.79322 1.18695 1.20422 1.18680 1.23900 0.99839 0.98118 0.97331 0.92198 0.88008 0.90529 0.81873 0.75168 0.86784 0.90585 0.85736 0.87845 0.74496 0.87203 0.87263 0.92016 0.86538 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 8.29 127.77 1.06 2.40 16 2 N -0.58 -12.83 3.08 -822.86 -2.54 -15.37 16 3 C 0.60 15.01 7.68 86.75 0.67 15.68 16 4 O -0.57 -17.08 16.43 -3.93 -0.06 -17.15 16 5 C -0.04 -0.91 6.83 42.46 0.29 -0.62 16 6 C -0.21 -3.17 10.81 22.41 0.24 -2.93 16 7 C 0.02 0.11 12.02 83.54 1.00 1.12 16 8 N -0.37 -3.15 6.83 -57.51 -0.39 -3.54 16 9 H 0.46 0.36 8.96 -219.99 -1.97 -1.61 16 10 N -0.27 -4.57 8.72 -48.17 -0.42 -4.99 16 11 C 0.12 2.33 4.44 45.58 0.20 2.53 16 12 C -0.14 -2.32 7.49 31.12 0.23 -2.08 16 13 C 0.11 2.37 3.54 45.52 0.16 2.53 16 14 N -0.70 -16.88 5.36 -440.04 -2.36 -19.24 16 15 C 0.54 19.19 7.85 87.66 0.69 19.87 16 16 O -0.56 -25.42 15.48 -3.04 -0.05 -25.47 16 17 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 18 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 19 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 23 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 C -0.15 -2.97 7.10 31.18 0.22 -2.75 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 2.05 5.24 -2.39 -0.01 2.03 16 30 H 0.08 1.71 4.52 -2.39 -0.01 1.70 16 31 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.23 -0.71 8.06 -2.91 -0.02 -0.73 16 33 H 0.11 2.29 7.26 -2.38 -0.02 2.27 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.12 1.47 8.11 -2.39 -0.02 1.45 16 36 H 0.10 2.76 4.82 -2.39 -0.01 2.75 16 37 H 0.42 7.01 8.72 -92.71 -0.81 6.20 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.51 7.45 -2.39 -0.02 1.49 16 Total: -1.00 -86.02 365.82 -0.04 -86.06 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -1.69 Total: 17.47 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.32 Total: 1.79 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -5.42 Total: -98.75 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.11 Total: -42.62 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -86.02 -0.04 -86.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701908036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.591 kcal (2) G-P(sol) polarization free energy of solvation -86.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds