Wall clock time and date at job start Tue Mar 31 2020 20:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00291 * 2 1 4 4 O 1.21281 * 120.00191 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00057 * 0.02562 * 3 2 1 6 6 S 1.80996 * 109.47367 * 179.97438 * 5 3 2 7 7 C 1.76199 * 100.00167 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99502 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00006 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00178 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99903 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47353 * 90.00107 * 11 9 7 13 13 H 1.48496 * 109.47225 * 209.99921 * 11 9 7 14 14 H 1.48501 * 109.47408 * 329.99905 * 11 9 7 15 15 C 1.46509 * 119.99894 * 180.02562 * 2 1 3 16 16 C 1.53781 * 113.61416 * 18.05088 * 15 2 1 17 17 C 1.53781 * 87.08067 * 89.11373 * 16 15 2 18 18 N 1.46493 * 113.69499 * 270.87143 * 17 16 15 19 19 C 1.34774 * 120.00255 * 256.51102 * 18 17 16 20 20 O 1.21568 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.47711 * 120.00373 * 179.97438 * 19 18 17 22 22 C 1.41497 * 126.52329 * 179.97438 * 21 19 18 23 23 C 1.35357 * 105.50750 * 179.97438 * 22 21 19 24 24 N 1.35032 * 107.22809 * 359.97438 * 23 22 21 25 25 H 0.96999 * 124.88569 * 180.02562 * 24 23 22 26 26 N 1.28474 * 110.23269 * 359.74960 * 24 23 22 27 27 C 1.53778 * 113.61572 * 115.54821 * 15 2 1 28 28 H 1.09002 * 109.46794 * 264.64081 * 1 2 3 29 29 H 1.09003 * 109.46826 * 24.64161 * 1 2 3 30 30 H 1.08994 * 109.46857 * 144.64073 * 1 2 3 31 31 H 1.09007 * 109.46884 * 300.00054 * 5 3 2 32 32 H 1.08994 * 109.47025 * 59.99484 * 5 3 2 33 33 H 0.97006 * 120.00593 * 179.97438 * 10 9 7 34 34 H 1.09000 * 112.90466 * 246.80356 * 15 2 1 35 35 H 1.08997 * 113.61430 * 203.67181 * 16 15 2 36 36 H 1.09008 * 113.61205 * 334.56775 * 16 15 2 37 37 H 1.09007 * 113.61044 * 139.98209 * 17 16 15 38 38 H 0.97004 * 119.99785 * 76.50450 * 18 17 16 39 39 H 1.08002 * 127.24588 * 359.97438 * 22 21 19 40 40 H 1.08006 * 126.38791 * 179.97438 * 23 22 21 41 41 H 1.09002 * 113.61441 * 25.43068 * 27 15 2 42 42 H 1.08998 * 113.61482 * 156.33986 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 0.0006 6 16 2.5617 3.8480 0.0012 7 6 1.4417 5.2082 0.0010 8 1 0.3764 5.0304 0.0011 9 6 1.9285 6.5080 0.0019 10 7 3.2268 6.7246 0.0024 11 14 0.7411 7.9500 0.0025 12 1 0.4261 8.3313 1.4027 13 1 1.3626 9.1033 -0.6967 14 1 -0.5094 7.5618 -0.6981 15 6 2.1976 -1.2688 -0.0006 16 6 1.3453 -2.4719 -0.4377 17 6 1.7821 -2.1578 -1.8783 18 7 0.8980 -1.2161 -2.5694 19 6 0.0209 -1.6657 -3.4886 20 8 -0.0363 -2.8528 -3.7446 21 6 -0.8709 -0.7163 -4.1851 22 6 -1.8371 -1.0350 -5.1684 23 6 -2.4050 0.1442 -5.5135 24 7 -1.8093 1.1059 -4.7760 25 1 -2.0232 2.0510 -4.8199 26 7 -0.9226 0.5883 -4.0038 27 6 3.0318 -1.4979 -1.2719 28 1 -0.3633 -0.0960 1.0232 29 1 -0.3633 0.9341 -0.4285 30 1 -0.3633 -0.8381 -0.5947 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8907 33 1 3.5671 7.6330 0.0027 34 1 2.7522 -1.4389 0.9222 35 1 1.7165 -3.4275 -0.0673 36 1 0.2775 -2.3361 -0.2658 37 1 2.0014 -3.0456 -2.4715 38 1 0.9439 -0.2688 -2.3654 39 1 -2.0720 -2.0133 -5.5611 40 1 -3.1884 0.2891 -6.2427 41 1 3.3256 -0.5758 -1.7735 42 1 3.8641 -2.1873 -1.1297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701909059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:11 Heat of formation + Delta-G solvation = 45.033247 kcal Electronic energy + Delta-G solvation = -27153.463862 eV Core-core repulsion = 23263.145303 eV Total energy + Delta-G solvation = -3890.318559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86288 -40.91715 -39.09587 -37.67557 -34.44069 -33.35766 -32.45213 -31.92600 -30.89972 -29.16655 -27.37924 -25.79108 -25.49200 -24.95970 -23.41670 -21.97132 -20.63266 -20.12981 -18.87066 -18.42534 -17.66293 -17.38502 -16.65458 -16.22003 -15.97976 -15.78875 -15.65849 -14.83098 -14.79520 -14.43887 -14.27337 -13.99617 -13.92758 -13.41615 -13.23971 -13.03183 -12.80569 -12.68793 -12.36185 -12.08701 -11.83054 -11.72625 -11.20719 -11.09504 -11.04820 -10.90357 -10.79397 -10.53334 -10.30996 -9.83054 -9.72618 -9.47839 -9.32979 -9.12750 -9.08938 -8.49918 -8.23679 -6.51379 -6.23792 -3.93941 1.36206 1.87871 2.58103 2.85716 3.02266 3.07791 3.19088 3.22785 3.24026 3.26908 3.58111 4.17599 4.21575 4.24757 4.42830 4.57705 4.63782 4.95967 4.98397 5.07019 5.11137 5.12245 5.35115 5.35232 5.45570 5.51198 5.57418 5.61526 5.62144 5.71756 5.79522 5.87731 5.98453 6.00099 6.07441 6.12547 6.34877 6.68722 6.74425 7.30860 7.51763 7.57167 7.63399 8.05541 8.32781 8.55257 9.21435 10.83624 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.003675 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.674936 B = 7616.820436 C = 9756.777601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.533 3.467 4 O -0.509 6.509 5 C -0.150 4.150 6 S -0.060 6.060 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.917 3.083 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.127 3.873 16 C -0.158 4.158 17 C 0.120 3.880 18 N -0.698 5.698 19 C 0.607 3.393 20 O -0.535 6.535 21 C -0.020 4.020 22 C -0.180 4.180 23 C -0.016 4.016 24 N -0.378 5.378 25 H 0.449 0.551 26 N -0.250 5.250 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.411 0.589 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.086 0.914 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 -16.975 -7.587 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.348 5.348 3 C 0.321 3.679 4 O -0.383 6.383 5 C -0.301 4.301 6 S 0.167 5.833 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.023 3.977 16 C -0.197 4.197 17 C 0.015 3.985 18 N -0.350 5.350 19 C 0.392 3.608 20 O -0.409 6.409 21 C -0.181 4.181 22 C -0.208 4.208 23 C -0.160 4.160 24 N -0.092 5.092 25 H 0.294 0.706 26 N -0.087 5.087 27 C -0.189 4.189 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.249 0.751 39 H 0.180 0.820 40 H 0.203 0.797 41 H 0.105 0.895 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.542 -16.882 -7.153 20.669 hybrid contribution -2.814 1.382 -0.384 3.159 sum -12.356 -15.500 -7.537 21.207 Atomic orbital electron populations 1.21959 0.79884 1.03616 1.02008 1.47685 1.06503 1.04867 1.75779 1.20330 0.87978 0.84242 0.75377 1.90703 1.13583 1.86750 1.47224 1.23574 1.04568 0.97228 1.04709 1.85397 1.07957 0.93251 1.96689 1.22847 0.94281 0.92238 1.58894 0.91031 1.24973 0.95619 0.98326 0.94590 1.70014 1.11721 1.21644 1.46867 0.86192 0.80240 0.80815 0.78372 1.20264 1.20766 1.19787 1.21843 0.93784 0.83486 0.98633 1.23815 1.01389 0.98224 0.96274 1.21921 0.90591 0.93355 0.92663 1.45722 1.37400 1.11914 1.39968 1.16895 0.79060 0.86470 0.78391 1.90781 1.69427 1.15643 1.65093 1.21951 1.02660 0.90495 1.03011 1.21781 0.98884 0.99474 1.00692 1.22979 1.02895 0.88515 1.01616 1.43442 1.26579 1.11136 1.28088 0.70568 1.73645 1.10025 1.10125 1.14913 1.23613 0.96370 1.02394 0.96527 0.92618 0.90315 0.90805 0.89227 0.89360 0.92190 0.89684 0.87686 0.89894 0.87737 0.75144 0.81993 0.79730 0.89507 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 8.64 59.85 0.52 1.28 16 2 N -0.61 -8.41 2.12 -172.99 -0.37 -8.78 16 3 C 0.53 9.83 7.39 -10.99 -0.08 9.74 16 4 O -0.51 -11.20 14.92 5.56 0.08 -11.12 16 5 C -0.15 -3.00 4.63 36.01 0.17 -2.83 16 6 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 7 C -0.53 -14.95 9.50 30.94 0.29 -14.66 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 11 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 C 0.13 1.51 4.12 -67.11 -0.28 1.23 16 16 C -0.16 -1.49 7.16 -25.92 -0.19 -1.67 16 17 C 0.12 1.32 4.26 -67.12 -0.29 1.04 16 18 N -0.70 -8.58 3.77 -54.00 -0.20 -8.78 16 19 C 0.61 8.10 7.82 -12.39 -0.10 8.00 16 20 O -0.53 -8.23 16.58 5.31 0.09 -8.14 16 21 C -0.02 -0.25 7.13 -82.76 -0.59 -0.84 16 22 C -0.18 -1.74 10.81 -39.37 -0.43 -2.17 16 23 C -0.02 -0.11 12.02 -17.17 -0.21 -0.31 16 24 N -0.38 -3.06 6.83 30.47 0.21 -2.85 16 25 H 0.45 2.28 8.96 -190.44 -1.71 0.57 16 26 N -0.25 -2.90 11.92 33.42 0.40 -2.51 16 27 C -0.15 -1.76 7.14 -25.92 -0.18 -1.95 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.90 6.25 -51.93 -0.32 0.57 16 30 H 0.07 0.75 4.66 -51.93 -0.24 0.51 16 31 H 0.09 1.66 7.42 -51.91 -0.39 1.27 16 32 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.79 5.78 -51.92 -0.30 0.49 16 37 H 0.10 1.15 7.56 -51.92 -0.39 0.76 16 38 H 0.41 5.39 6.62 -40.82 -0.27 5.12 16 39 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.19 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.09 1.28 7.28 -51.93 -0.38 0.91 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.72 364.36 -8.76 -45.48 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.50 Total: 5.28 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.45 Total: -1.14 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.77 Total: -48.05 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.72 -8.76 -45.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701909059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.509 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds