Wall clock time and date at job start Tue Mar 31 2020 20:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00291 * 2 1 4 4 O 1.21281 * 120.00191 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00057 * 0.02562 * 3 2 1 6 6 S 1.80996 * 109.47367 * 179.97438 * 5 3 2 7 7 C 1.76199 * 100.00167 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99502 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00006 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00178 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99903 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47353 * 90.00107 * 11 9 7 13 13 H 1.48496 * 109.47225 * 209.99921 * 11 9 7 14 14 H 1.48501 * 109.47408 * 329.99905 * 11 9 7 15 15 C 1.46509 * 119.99894 * 180.02562 * 2 1 3 16 16 C 1.53781 * 113.61416 * 18.05088 * 15 2 1 17 17 C 1.53781 * 87.08067 * 89.11373 * 16 15 2 18 18 N 1.46493 * 113.69499 * 270.87143 * 17 16 15 19 19 C 1.34774 * 120.00255 * 256.51102 * 18 17 16 20 20 O 1.21568 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.47711 * 120.00373 * 179.97438 * 19 18 17 22 22 C 1.41497 * 126.52329 * 179.97438 * 21 19 18 23 23 C 1.35357 * 105.50750 * 179.97438 * 22 21 19 24 24 N 1.35032 * 107.22809 * 359.97438 * 23 22 21 25 25 H 0.96999 * 124.88569 * 180.02562 * 24 23 22 26 26 N 1.28474 * 110.23269 * 359.74960 * 24 23 22 27 27 C 1.53778 * 113.61572 * 115.54821 * 15 2 1 28 28 H 1.09002 * 109.46794 * 264.64081 * 1 2 3 29 29 H 1.09003 * 109.46826 * 24.64161 * 1 2 3 30 30 H 1.08994 * 109.46857 * 144.64073 * 1 2 3 31 31 H 1.09007 * 109.46884 * 300.00054 * 5 3 2 32 32 H 1.08994 * 109.47025 * 59.99484 * 5 3 2 33 33 H 0.97006 * 120.00593 * 179.97438 * 10 9 7 34 34 H 1.09000 * 112.90466 * 246.80356 * 15 2 1 35 35 H 1.08997 * 113.61430 * 203.67181 * 16 15 2 36 36 H 1.09008 * 113.61205 * 334.56775 * 16 15 2 37 37 H 1.09007 * 113.61044 * 139.98209 * 17 16 15 38 38 H 0.97004 * 119.99785 * 76.50450 * 18 17 16 39 39 H 1.08002 * 127.24588 * 359.97438 * 22 21 19 40 40 H 1.08006 * 126.38791 * 179.97438 * 23 22 21 41 41 H 1.09002 * 113.61441 * 25.43068 * 27 15 2 42 42 H 1.08998 * 113.61482 * 156.33986 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 0.0006 6 16 2.5617 3.8480 0.0012 7 6 1.4417 5.2082 0.0010 8 1 0.3764 5.0304 0.0011 9 6 1.9285 6.5080 0.0019 10 7 3.2268 6.7246 0.0024 11 14 0.7411 7.9500 0.0025 12 1 0.4261 8.3313 1.4027 13 1 1.3626 9.1033 -0.6967 14 1 -0.5094 7.5618 -0.6981 15 6 2.1976 -1.2688 -0.0006 16 6 1.3453 -2.4719 -0.4377 17 6 1.7821 -2.1578 -1.8783 18 7 0.8980 -1.2161 -2.5694 19 6 0.0209 -1.6657 -3.4886 20 8 -0.0363 -2.8528 -3.7446 21 6 -0.8709 -0.7163 -4.1851 22 6 -1.8371 -1.0350 -5.1684 23 6 -2.4050 0.1442 -5.5135 24 7 -1.8093 1.1059 -4.7760 25 1 -2.0232 2.0510 -4.8199 26 7 -0.9226 0.5883 -4.0038 27 6 3.0318 -1.4979 -1.2719 28 1 -0.3633 -0.0960 1.0232 29 1 -0.3633 0.9341 -0.4285 30 1 -0.3633 -0.8381 -0.5947 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8907 33 1 3.5671 7.6330 0.0027 34 1 2.7522 -1.4389 0.9222 35 1 1.7165 -3.4275 -0.0673 36 1 0.2775 -2.3361 -0.2658 37 1 2.0014 -3.0456 -2.4715 38 1 0.9439 -0.2688 -2.3654 39 1 -2.0720 -2.0133 -5.5611 40 1 -3.1884 0.2891 -6.2427 41 1 3.3256 -0.5758 -1.7735 42 1 3.8641 -2.1873 -1.1297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701909059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:10 Heat of formation + Delta-G solvation = 18.680927 kcal Electronic energy + Delta-G solvation = -27154.606584 eV Core-core repulsion = 23263.145303 eV Total energy + Delta-G solvation = -3891.461281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.57382 -41.97672 -40.27153 -38.87892 -35.66206 -34.58088 -34.35247 -32.67821 -31.60731 -30.70374 -28.38398 -27.68579 -26.66548 -25.91226 -24.40726 -22.65102 -21.68160 -21.17058 -19.96115 -19.49427 -19.21621 -18.40271 -17.78626 -17.44512 -16.99253 -16.87556 -16.79072 -16.72038 -15.94777 -15.90977 -15.42097 -15.15050 -14.62343 -14.57100 -14.50065 -14.27218 -13.98429 -13.80977 -13.49768 -13.36718 -13.15661 -12.90537 -12.81849 -12.77658 -12.55564 -11.97290 -11.86032 -11.72424 -11.53155 -11.32069 -11.14077 -10.79926 -10.51661 -10.25372 -10.15479 -10.06841 -9.66542 -8.65779 -8.34072 -6.11770 0.49928 1.24803 1.25180 1.41857 1.45343 1.55261 1.57768 1.86681 2.06642 2.27149 2.28483 2.31884 3.00211 3.21766 3.36366 3.42841 3.50320 3.70729 3.92873 4.04765 4.06904 4.16840 4.24311 4.26128 4.45903 4.52012 4.65824 4.71242 4.75346 4.76882 4.78553 4.82455 4.94144 5.03289 5.04914 5.32703 5.39976 5.41858 5.68517 6.14220 6.19842 6.24158 6.36933 6.85824 7.07198 7.08677 7.15019 8.75119 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.003675 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.674936 B = 7616.820436 C = 9756.777601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.595 5.595 3 C 0.533 3.467 4 O -0.554 6.554 5 C -0.124 4.124 6 S -0.147 6.147 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.015 3.985 10 N -0.912 5.912 11 Si 0.997 3.003 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.256 1.256 15 C 0.114 3.886 16 C -0.134 4.134 17 C 0.115 3.885 18 N -0.697 5.697 19 C 0.605 3.395 20 O -0.562 6.562 21 C -0.047 4.047 22 C -0.204 4.204 23 C 0.013 3.987 24 N -0.369 5.369 25 H 0.462 0.538 26 N -0.280 5.280 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.271 0.729 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.407 0.593 39 H 0.168 0.832 40 H 0.233 0.767 41 H 0.051 0.949 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.071 -17.522 -7.951 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.330 5.330 3 C 0.321 3.679 4 O -0.431 6.431 5 C -0.275 4.275 6 S 0.080 5.920 7 C -0.692 4.692 8 H 0.100 0.900 9 C -0.190 4.190 10 N -0.548 5.548 11 Si 0.818 3.182 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.180 1.180 15 C 0.011 3.989 16 C -0.172 4.172 17 C 0.010 3.990 18 N -0.347 5.347 19 C 0.391 3.609 20 O -0.439 6.439 21 C -0.206 4.206 22 C -0.232 4.232 23 C -0.132 4.132 24 N -0.086 5.086 25 H 0.309 0.691 26 N -0.118 5.118 27 C -0.188 4.188 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.153 0.847 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.243 0.757 39 H 0.186 0.814 40 H 0.249 0.751 41 H 0.070 0.930 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.694 -17.458 -7.504 22.852 hybrid contribution -1.885 1.457 -0.324 2.404 sum -14.579 -16.001 -7.828 23.019 Atomic orbital electron populations 1.22160 0.77881 1.04170 1.03540 1.47589 1.07666 1.04206 1.73569 1.20060 0.87326 0.85009 0.75544 1.90687 1.15287 1.87364 1.49770 1.23381 1.02771 0.95226 1.06093 1.85570 1.12381 0.97057 1.96991 1.23176 0.94591 0.92654 1.58773 0.90023 1.26093 0.97511 1.01608 0.93762 1.70182 1.14128 1.22430 1.48079 0.84982 0.77993 0.76408 0.78774 1.19436 1.20374 1.18002 1.22097 0.94671 0.83344 0.98804 1.23783 1.01269 0.98108 0.94082 1.22043 0.90186 0.93017 0.93709 1.45772 1.37297 1.11766 1.39900 1.17131 0.79113 0.86417 0.78216 1.90750 1.70441 1.16707 1.66017 1.21961 1.03636 0.90732 1.04278 1.22045 0.99211 1.00971 1.00960 1.23624 1.02097 0.86911 1.00521 1.43571 1.25613 1.12105 1.27289 0.69054 1.73573 1.11652 1.10087 1.16533 1.23648 0.97477 1.01396 0.96230 0.90593 0.90509 0.89467 0.87680 0.87829 0.92040 0.89472 0.84653 0.89374 0.87550 0.75696 0.81447 0.75108 0.93011 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.31 8.64 127.77 1.10 2.41 16 2 N -0.60 -15.88 2.12 -819.62 -1.74 -17.61 16 3 C 0.53 19.86 7.39 87.66 0.65 20.51 16 4 O -0.55 -25.29 14.92 -3.03 -0.05 -25.33 16 5 C -0.12 -4.94 4.63 71.24 0.33 -4.61 16 6 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 7 C -0.54 -30.68 9.50 67.95 0.65 -30.03 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 9 C 0.01 0.84 5.49 84.86 0.47 1.31 16 10 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 11 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 15 C 0.11 2.58 4.12 45.51 0.19 2.77 16 16 C -0.13 -2.19 7.16 31.12 0.22 -1.97 16 17 C 0.12 2.44 4.26 45.52 0.19 2.63 16 18 N -0.70 -16.96 3.77 -443.04 -1.67 -18.63 16 19 C 0.61 16.09 7.82 86.75 0.68 16.76 16 20 O -0.56 -17.25 16.58 -3.93 -0.07 -17.32 16 21 C -0.05 -1.11 7.13 42.45 0.30 -0.80 16 22 C -0.20 -3.65 10.81 22.41 0.24 -3.41 16 23 C 0.01 0.14 12.02 83.54 1.00 1.15 16 24 N -0.37 -5.22 6.83 -57.51 -0.39 -5.61 16 25 H 0.46 3.64 8.96 -219.99 -1.97 1.66 16 26 N -0.28 -6.28 11.92 -48.18 -0.57 -6.86 16 27 C -0.15 -3.46 7.14 31.12 0.22 -3.24 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.62 6.25 -2.39 -0.01 1.60 16 30 H 0.09 1.59 4.66 -2.39 -0.01 1.58 16 31 H 0.11 3.85 7.42 -2.39 -0.02 3.83 16 32 H 0.10 3.80 8.11 -2.40 -0.02 3.78 16 33 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.41 5.78 -2.38 -0.01 1.39 16 37 H 0.11 2.25 7.56 -2.38 -0.02 2.23 16 38 H 0.41 10.70 6.62 -92.71 -0.61 10.09 16 39 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.23 0.14 8.06 -2.91 -0.02 0.12 16 41 H 0.05 1.60 7.28 -2.39 -0.02 1.58 16 42 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -83.66 364.36 1.42 -82.24 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -1.50 Total: 25.43 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.25 Total: 3.49 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.09 Total: -104.05 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.11 Total: -42.65 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -83.66 1.42 -82.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701909059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.919 kcal (2) G-P(sol) polarization free energy of solvation -83.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds