Wall clock time and date at job start Tue Mar 31 2020 20:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00162 * 2 1 4 4 C 1.53003 * 109.46943 * 272.07960 * 3 2 1 5 5 H 1.08998 * 112.77872 * 44.57623 * 4 3 2 6 6 C 1.53238 * 113.38869 * 273.86387 * 4 3 2 7 7 C 1.53495 * 83.43248 * 219.29333 * 6 4 3 8 8 N 1.47067 * 113.46528 * 175.34957 * 4 3 2 9 9 C 1.34772 * 136.06279 * 321.94590 * 8 4 3 10 10 O 1.21605 * 120.00025 * 354.91707 * 9 8 4 11 11 C 1.47432 * 120.00439 * 174.92096 * 9 8 4 12 12 C 1.41291 * 126.41271 * 0.02562 * 11 9 8 13 13 N 1.30445 * 108.02053 * 179.97438 * 12 11 9 14 14 N 1.39932 * 108.90088 * 359.97438 * 13 12 11 15 15 H 0.97000 * 125.75398 * 180.02562 * 14 13 12 16 16 C 1.34266 * 108.48942 * 0.02562 * 14 13 12 17 17 C 1.34776 * 119.99311 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99651 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00749 * 0.02562 * 17 2 1 20 20 S 1.81004 * 109.47344 * 179.97438 * 19 17 2 21 21 C 1.76199 * 99.99529 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00501 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99750 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99567 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00191 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46924 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46962 * 120.00132 * 25 23 21 28 28 H 1.48502 * 109.47281 * 240.00461 * 25 23 21 29 29 H 1.09003 * 109.47157 * 95.13754 * 1 2 3 30 30 H 1.08995 * 109.47096 * 215.14244 * 1 2 3 31 31 H 1.08998 * 109.47027 * 335.14374 * 1 2 3 32 32 H 1.09003 * 109.47216 * 152.08422 * 3 2 1 33 33 H 1.08997 * 109.47554 * 32.08400 * 3 2 1 34 34 H 1.08992 * 114.32415 * 105.65484 * 6 4 3 35 35 H 1.09004 * 114.19470 * 332.91992 * 6 4 3 36 36 H 1.08993 * 113.46798 * 271.11991 * 7 6 4 37 37 H 1.09001 * 113.52109 * 140.68156 * 7 6 4 38 38 H 1.08003 * 125.98781 * 359.97438 * 12 11 9 39 39 H 1.07995 * 126.28608 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.46750 * 300.00309 * 19 17 2 41 41 H 1.09002 * 109.46933 * 59.99699 * 19 17 2 42 42 H 0.97002 * 119.99627 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4072 1.7365 -1.4416 5 1 1.5096 1.6378 -2.0521 6 6 3.6593 1.1444 -2.0972 7 6 3.7957 2.5509 -2.6966 8 7 3.0408 3.0599 -1.5415 9 6 2.9668 4.2247 -0.8676 10 8 2.1540 4.3590 0.0269 11 6 3.8712 5.3360 -1.2147 12 6 4.8602 5.3286 -2.2238 13 7 5.4474 6.4934 -2.2218 14 7 4.8705 7.2903 -1.2267 15 1 5.1223 8.2026 -1.0143 16 6 3.9097 6.5790 -0.6154 17 6 2.1388 -1.1673 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4724 0.0005 20 16 2.5615 -3.8482 0.0005 21 6 1.4413 -5.2082 0.0013 22 1 0.3760 -5.0305 0.0020 23 6 1.9279 -6.5082 0.0010 24 7 3.2263 -6.7247 0.0006 25 14 0.7405 -7.9501 0.0025 26 1 -0.6550 -7.4421 0.0034 27 1 0.9649 -8.7774 -1.2101 28 1 0.9674 -8.7770 1.2150 29 1 -0.3634 -0.0920 -1.0236 30 1 -0.3633 -0.8403 0.5915 31 1 -0.3633 0.9325 0.4320 32 1 3.1657 1.1293 0.4811 33 1 1.6253 2.0187 0.5458 34 1 3.4559 0.3640 -2.8303 35 1 4.4491 0.8798 -1.3941 36 1 3.2717 2.6714 -3.6447 37 1 4.8243 2.9096 -2.7351 38 1 5.0898 4.5032 -2.8814 39 1 3.2819 6.9174 0.1955 40 1 0.7583 -2.5298 0.8903 41 1 0.7590 -2.5303 -0.8897 42 1 3.5664 -7.6332 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702456279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:58 Heat of formation + Delta-G solvation = 56.723192 kcal Electronic energy + Delta-G solvation = -26149.310187 eV Core-core repulsion = 22259.498542 eV Total energy + Delta-G solvation = -3889.811645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.78173 -40.57582 -39.12456 -37.70622 -35.22242 -32.45536 -32.42216 -31.15596 -30.33717 -29.41495 -28.06369 -26.31771 -25.47269 -23.82543 -23.57168 -22.15539 -21.21599 -19.61669 -19.22448 -18.40231 -17.63052 -16.76011 -16.47358 -16.20361 -16.13386 -15.38886 -15.28883 -15.13588 -14.79899 -14.56013 -13.97316 -13.93762 -13.62286 -13.36169 -13.09493 -13.02924 -12.85311 -12.63153 -12.52188 -12.28441 -12.03141 -11.71736 -11.57975 -11.39247 -11.06803 -11.00792 -10.74988 -10.68522 -10.30995 -9.96093 -9.78273 -9.33853 -9.30834 -9.06753 -8.92576 -8.44572 -8.21201 -6.48896 -6.21348 -3.91338 1.13717 1.77423 2.21087 2.55702 3.04643 3.07309 3.20739 3.21888 3.28611 3.32834 3.66284 4.08651 4.21001 4.26490 4.37612 4.56327 4.76957 4.82788 4.89906 5.00287 5.04506 5.07184 5.13918 5.15181 5.19123 5.23779 5.48524 5.54070 5.60862 5.70473 5.77765 5.81949 5.91941 5.94661 6.00601 6.16319 6.19585 6.61575 6.65972 7.02578 7.53974 7.57497 7.60896 8.03565 8.36099 8.57921 9.24346 10.86084 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.002064 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.621440 B =13559.867901 C =14036.809953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.621 5.621 3 C 0.113 3.887 4 C 0.123 3.877 5 H 0.093 0.907 6 C -0.142 4.142 7 C 0.092 3.908 8 N -0.637 5.637 9 C 0.623 3.377 10 O -0.549 6.549 11 C -0.287 4.287 12 C 0.080 3.920 13 N -0.297 5.297 14 N -0.464 5.464 15 H 0.445 0.555 16 C 0.133 3.867 17 C 0.533 3.467 18 O -0.512 6.512 19 C -0.150 4.150 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.194 0.806 39 H 0.193 0.807 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 26.593 -4.993 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.358 5.358 3 C -0.011 4.011 4 C 0.019 3.981 5 H 0.111 0.889 6 C -0.180 4.180 7 C -0.030 4.030 8 N -0.372 5.372 9 C 0.414 3.586 10 O -0.428 6.428 11 C -0.302 4.302 12 C -0.108 4.108 13 N -0.117 5.117 14 N -0.169 5.169 15 H 0.290 0.710 16 C -0.020 4.020 17 C 0.321 3.679 18 O -0.386 6.386 19 C -0.301 4.301 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.211 0.789 39 H 0.209 0.791 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.986 27.458 -4.946 27.917 hybrid contribution -2.818 -0.880 0.386 2.977 sum -1.832 26.578 -4.560 27.029 Atomic orbital electron populations 1.21790 0.79531 1.03140 1.01829 1.47795 1.06852 1.05400 1.75723 1.21594 0.99201 0.85136 0.95180 1.23073 0.97535 0.79320 0.98177 0.88880 1.23468 0.98209 0.95414 1.00884 1.23206 0.97014 0.92829 0.89987 1.49443 1.44842 1.10935 1.32027 1.16698 0.81756 0.79287 0.80834 1.90772 1.38632 1.81209 1.32218 1.20232 1.07059 0.96665 1.06214 1.24483 0.93182 0.95797 0.97296 1.77193 1.21504 1.04014 1.09039 1.46256 1.28000 1.15249 1.27436 0.71023 1.23056 0.91164 0.91213 0.96543 1.20343 0.87981 0.84488 0.75054 1.90679 1.13587 1.86735 1.47587 1.23557 1.04540 0.97228 1.04727 1.85362 1.08072 0.93333 1.96695 1.22906 0.94364 0.92223 1.58731 0.90910 1.24992 0.95660 0.98384 0.94587 1.70028 1.11709 1.21528 1.47010 0.86126 0.80384 0.81158 0.77884 1.19618 1.20592 1.20593 0.92734 0.90799 0.91133 0.89239 0.89427 0.88951 0.87559 0.89395 0.90111 0.78932 0.79064 0.89320 0.89279 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.19 59.85 0.61 1.47 16 2 N -0.62 -8.74 2.87 -181.57 -0.52 -9.26 16 3 C 0.11 1.50 5.27 -4.04 -0.02 1.48 16 4 C 0.12 1.37 4.27 -72.52 -0.31 1.06 16 5 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.14 -1.48 7.58 -26.35 -0.20 -1.68 16 7 C 0.09 0.71 7.35 -8.50 -0.06 0.65 16 8 N -0.64 -6.74 3.57 -178.86 -0.64 -7.38 16 9 C 0.62 7.46 7.94 -12.52 -0.10 7.36 16 10 O -0.55 -8.13 16.48 5.27 0.09 -8.04 16 11 C -0.29 -2.76 6.13 -105.07 -0.64 -3.41 16 12 C 0.08 0.69 11.17 -16.98 -0.19 0.50 16 13 N -0.30 -2.65 12.63 30.86 0.39 -2.26 16 14 N -0.46 -2.87 7.29 30.85 0.22 -2.65 16 15 H 0.44 1.13 8.96 -182.72 -1.64 -0.50 16 16 C 0.13 0.95 11.82 -16.56 -0.20 0.76 16 17 C 0.53 9.75 7.69 -10.99 -0.08 9.67 16 18 O -0.51 -10.94 14.94 5.55 0.08 -10.85 16 19 C -0.15 -2.98 4.78 36.00 0.17 -2.81 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.03 9.50 30.94 0.29 -14.74 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 25 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.79 6.65 -51.93 -0.35 0.44 16 31 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 32 H 0.09 1.36 7.09 -51.93 -0.37 1.00 16 33 H 0.09 1.18 6.88 -51.93 -0.36 0.82 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.11 1.32 7.89 -51.93 -0.41 0.91 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.49 5.78 -51.93 -0.30 0.19 16 38 H 0.19 1.21 5.08 -52.48 -0.27 0.95 16 39 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.09 1.66 7.41 -51.92 -0.38 1.27 16 41 H 0.09 1.63 8.11 -51.91 -0.42 1.21 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -37.50 370.06 -8.68 -46.18 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.56 Total: -0.79 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -0.83 Total: 2.28 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.19 Total: -46.73 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.50 -8.68 -46.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702456279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.906 kcal (2) G-P(sol) polarization free energy of solvation -37.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds