Wall clock time and date at job start Tue Mar 31 2020 20:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00162 * 2 1 4 4 C 1.53003 * 109.46943 * 272.07960 * 3 2 1 5 5 H 1.08998 * 112.77872 * 44.57623 * 4 3 2 6 6 C 1.53238 * 113.38869 * 273.86387 * 4 3 2 7 7 C 1.53495 * 83.43248 * 219.29333 * 6 4 3 8 8 N 1.47067 * 113.46528 * 175.34957 * 4 3 2 9 9 C 1.34772 * 136.06279 * 321.94590 * 8 4 3 10 10 O 1.21605 * 120.00025 * 354.91707 * 9 8 4 11 11 C 1.47432 * 120.00439 * 174.92096 * 9 8 4 12 12 C 1.41291 * 126.41271 * 0.02562 * 11 9 8 13 13 N 1.30445 * 108.02053 * 179.97438 * 12 11 9 14 14 N 1.39932 * 108.90088 * 359.97438 * 13 12 11 15 15 H 0.97000 * 125.75398 * 180.02562 * 14 13 12 16 16 C 1.34266 * 108.48942 * 0.02562 * 14 13 12 17 17 C 1.34776 * 119.99311 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99651 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00749 * 0.02562 * 17 2 1 20 20 S 1.81004 * 109.47344 * 179.97438 * 19 17 2 21 21 C 1.76199 * 99.99529 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00501 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99750 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99567 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00191 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46924 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46962 * 120.00132 * 25 23 21 28 28 H 1.48502 * 109.47281 * 240.00461 * 25 23 21 29 29 H 1.09003 * 109.47157 * 95.13754 * 1 2 3 30 30 H 1.08995 * 109.47096 * 215.14244 * 1 2 3 31 31 H 1.08998 * 109.47027 * 335.14374 * 1 2 3 32 32 H 1.09003 * 109.47216 * 152.08422 * 3 2 1 33 33 H 1.08997 * 109.47554 * 32.08400 * 3 2 1 34 34 H 1.08992 * 114.32415 * 105.65484 * 6 4 3 35 35 H 1.09004 * 114.19470 * 332.91992 * 6 4 3 36 36 H 1.08993 * 113.46798 * 271.11991 * 7 6 4 37 37 H 1.09001 * 113.52109 * 140.68156 * 7 6 4 38 38 H 1.08003 * 125.98781 * 359.97438 * 12 11 9 39 39 H 1.07995 * 126.28608 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.46750 * 300.00309 * 19 17 2 41 41 H 1.09002 * 109.46933 * 59.99699 * 19 17 2 42 42 H 0.97002 * 119.99627 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4072 1.7365 -1.4416 5 1 1.5096 1.6378 -2.0521 6 6 3.6593 1.1444 -2.0972 7 6 3.7957 2.5509 -2.6966 8 7 3.0408 3.0599 -1.5415 9 6 2.9668 4.2247 -0.8676 10 8 2.1540 4.3590 0.0269 11 6 3.8712 5.3360 -1.2147 12 6 4.8602 5.3286 -2.2238 13 7 5.4474 6.4934 -2.2218 14 7 4.8705 7.2903 -1.2267 15 1 5.1223 8.2026 -1.0143 16 6 3.9097 6.5790 -0.6154 17 6 2.1388 -1.1673 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4724 0.0005 20 16 2.5615 -3.8482 0.0005 21 6 1.4413 -5.2082 0.0013 22 1 0.3760 -5.0305 0.0020 23 6 1.9279 -6.5082 0.0010 24 7 3.2263 -6.7247 0.0006 25 14 0.7405 -7.9501 0.0025 26 1 -0.6550 -7.4421 0.0034 27 1 0.9649 -8.7774 -1.2101 28 1 0.9674 -8.7770 1.2150 29 1 -0.3634 -0.0920 -1.0236 30 1 -0.3633 -0.8403 0.5915 31 1 -0.3633 0.9325 0.4320 32 1 3.1657 1.1293 0.4811 33 1 1.6253 2.0187 0.5458 34 1 3.4559 0.3640 -2.8303 35 1 4.4491 0.8798 -1.3941 36 1 3.2717 2.6714 -3.6447 37 1 4.8243 2.9096 -2.7351 38 1 5.0898 4.5032 -2.8814 39 1 3.2819 6.9174 0.1955 40 1 0.7583 -2.5298 0.8903 41 1 0.7590 -2.5303 -0.8897 42 1 3.5664 -7.6332 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702456279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:57 Heat of formation + Delta-G solvation = 29.442113 kcal Electronic energy + Delta-G solvation = -26150.493184 eV Core-core repulsion = 22259.498542 eV Total energy + Delta-G solvation = -3890.994641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42309 -41.48573 -40.38969 -38.63602 -36.50134 -34.55674 -33.11488 -32.04260 -31.43804 -30.20489 -29.26365 -27.66477 -27.28627 -24.70115 -24.39677 -22.81645 -21.96871 -20.67385 -20.30042 -19.52449 -19.11696 -18.02998 -17.42427 -17.26888 -17.06255 -16.85561 -16.48309 -16.25401 -15.92073 -15.67709 -15.35686 -14.88381 -14.68717 -14.46498 -14.19113 -14.13201 -13.94602 -13.80643 -13.56170 -13.35204 -13.20136 -13.10686 -12.90660 -12.76081 -12.54988 -12.49283 -12.08576 -11.67751 -11.55750 -11.13327 -10.90882 -10.88863 -10.77580 -10.22248 -10.05568 -9.79496 -9.50248 -8.62533 -8.32315 -6.09150 0.51818 1.10586 1.27113 1.42850 1.45342 1.55686 1.61782 1.68105 1.91364 2.24937 2.31033 2.42202 3.01927 3.29284 3.37028 3.51466 3.73169 3.81295 3.92032 3.99421 4.03604 4.12782 4.24639 4.31972 4.35136 4.43095 4.46422 4.53264 4.55697 4.60158 4.70482 4.80191 4.93943 5.00007 5.03284 5.28904 5.33850 5.45128 5.54247 6.19345 6.22642 6.29353 6.45923 6.74221 7.09473 7.15483 7.19664 8.76939 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.002064 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.621440 B =13559.867901 C =14036.809953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.119 3.881 4 C 0.122 3.878 5 H 0.110 0.890 6 C -0.145 4.145 7 C 0.105 3.895 8 N -0.640 5.640 9 C 0.618 3.382 10 O -0.588 6.588 11 C -0.317 4.317 12 C 0.083 3.917 13 N -0.321 5.321 14 N -0.449 5.449 15 H 0.461 0.539 16 C 0.148 3.852 17 C 0.534 3.466 18 O -0.552 6.552 19 C -0.124 4.124 20 S -0.146 6.146 21 C -0.544 4.544 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.210 0.790 39 H 0.215 0.785 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 27.863 -5.949 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C -0.005 4.005 4 C 0.017 3.983 5 H 0.127 0.873 6 C -0.183 4.183 7 C -0.017 4.017 8 N -0.374 5.374 9 C 0.411 3.589 10 O -0.470 6.470 11 C -0.332 4.332 12 C -0.105 4.105 13 N -0.142 5.142 14 N -0.156 5.156 15 H 0.309 0.691 16 C -0.007 4.007 17 C 0.321 3.679 18 O -0.429 6.429 19 C -0.275 4.275 20 S 0.081 5.919 21 C -0.692 4.692 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.226 0.774 39 H 0.232 0.768 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.985 28.786 -5.928 29.407 hybrid contribution -2.225 -1.113 0.722 2.591 sum -3.210 27.673 -5.206 28.341 Atomic orbital electron populations 1.22094 0.76942 1.04459 1.03521 1.47733 1.08357 1.04298 1.73854 1.21544 0.97743 0.84404 0.96774 1.23097 0.98485 0.79996 0.96682 0.87263 1.23341 0.97192 0.97144 1.00618 1.23341 0.98293 0.90140 0.89913 1.49504 1.44879 1.10325 1.32693 1.17046 0.81633 0.79880 0.80321 1.90736 1.40326 1.82050 1.33861 1.20228 1.07967 0.97039 1.07936 1.24726 0.92532 0.96144 0.97101 1.77152 1.22370 1.04481 1.10233 1.46277 1.27165 1.15755 1.26391 0.69121 1.23417 0.90664 0.90456 0.96148 1.20092 0.87401 0.85109 0.75282 1.90673 1.15176 1.87259 1.49809 1.23376 1.02771 0.95011 1.06336 1.85526 1.12376 0.97016 1.96996 1.23236 0.94691 0.92734 1.58565 0.89992 1.26101 0.97544 1.01646 0.93864 1.70187 1.14017 1.22354 1.48163 0.84931 0.78279 0.76888 0.78016 1.18030 1.19913 1.20119 0.90591 0.90499 0.89107 0.91916 0.89352 0.88884 0.90228 0.86552 0.88272 0.77371 0.76809 0.87837 0.87264 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.19 127.77 1.30 2.66 16 2 N -0.61 -16.54 2.87 -846.76 -2.43 -18.97 16 3 C 0.12 3.15 5.27 86.38 0.45 3.61 16 4 C 0.12 2.60 4.27 41.71 0.18 2.78 16 5 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.14 -2.99 7.58 30.84 0.23 -2.75 16 7 C 0.10 1.42 7.35 83.18 0.61 2.03 16 8 N -0.64 -12.89 3.57 -838.04 -2.99 -15.88 16 9 C 0.62 14.37 7.94 86.67 0.69 15.06 16 10 O -0.59 -17.24 16.48 -4.05 -0.07 -17.31 16 11 C -0.32 -5.71 6.13 -20.15 -0.12 -5.84 16 12 C 0.08 1.28 11.17 85.65 0.96 2.24 16 13 N -0.32 -5.22 12.63 -56.27 -0.71 -5.93 16 14 N -0.45 -4.70 7.29 -56.32 -0.41 -5.11 16 15 H 0.46 1.38 8.96 -213.43 -1.91 -0.53 16 16 C 0.15 1.86 11.82 84.27 1.00 2.86 16 17 C 0.53 19.55 7.69 87.66 0.67 20.22 16 18 O -0.55 -24.47 14.94 -3.05 -0.05 -24.51 16 19 C -0.12 -4.85 4.78 71.24 0.34 -4.51 16 20 S -0.15 -7.99 20.57 -56.49 -1.16 -9.16 16 21 C -0.54 -30.73 9.50 67.96 0.65 -30.09 16 22 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 23 C 0.01 0.74 5.49 84.86 0.47 1.21 16 24 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 25 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.44 6.65 -2.39 -0.02 1.43 16 31 H 0.09 1.40 7.86 -2.39 -0.02 1.38 16 32 H 0.06 2.01 7.09 -2.39 -0.02 1.99 16 33 H 0.09 2.35 6.88 -2.39 -0.02 2.33 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.09 7.89 -2.38 -0.02 2.07 16 36 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.00 5.78 -2.39 -0.01 0.98 16 38 H 0.21 2.21 5.08 -2.91 -0.01 2.19 16 39 H 0.22 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.10 3.74 7.41 -2.40 -0.02 3.73 16 41 H 0.11 3.83 8.11 -2.39 -0.02 3.81 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -84.10 370.06 1.08 -83.02 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.84 Total: 14.26 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 7.42 Total: 9.48 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -6.26 Total: -101.08 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.11 Total: -41.82 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.16 kcal Total: -84.10 1.08 -83.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702456279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.464 kcal (2) G-P(sol) polarization free energy of solvation -84.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds