Wall clock time and date at job start Tue Mar 31 2020 20:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47369 * 89.99742 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21468 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.48536 * 119.99551 * 180.02562 * 7 6 5 10 10 N 1.32461 * 119.19057 * 359.73254 * 9 7 6 11 11 C 1.32109 * 120.76605 * 179.71919 * 10 9 7 12 12 C 1.38803 * 119.16746 * 0.54011 * 11 10 9 13 13 C 1.38796 * 118.50447 * 359.73598 * 12 11 10 14 14 N 1.32116 * 119.16750 * 359.97438 * 13 12 11 15 15 C 1.34779 * 119.99726 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99426 * 179.97438 * 15 2 1 17 17 C 1.50690 * 120.00123 * 0.02562 * 15 2 1 18 18 S 1.81000 * 109.46991 * 180.02562 * 17 15 2 19 19 C 1.76204 * 100.00152 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99596 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00334 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99794 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00178 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47048 * 89.99177 * 23 21 19 25 25 H 1.48493 * 109.46829 * 209.99661 * 23 21 19 26 26 H 1.48508 * 109.46701 * 329.99340 * 23 21 19 27 27 H 1.08994 * 109.47354 * 90.00240 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 1 2 3 29 29 H 1.09000 * 109.47206 * 330.00186 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 3 2 1 31 31 H 1.09004 * 109.47041 * 210.00060 * 3 2 1 32 32 H 1.09001 * 109.46997 * 60.00303 * 4 3 2 33 33 H 1.08996 * 109.47452 * 299.99877 * 4 3 2 34 34 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 35 35 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 36 36 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 37 37 H 1.08002 * 120.41691 * 180.27436 * 11 10 9 38 38 H 1.08001 * 120.74873 * 179.74998 * 12 11 10 39 39 H 1.07999 * 120.41584 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46976 * 299.99434 * 17 15 2 41 41 H 1.08998 * 109.47566 * 59.99491 * 17 15 2 42 42 H 0.97002 * 120.00005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2181 3.0351 1.4424 6 7 3.4628 3.4579 2.8236 7 6 4.1254 4.6053 3.0698 8 8 4.5194 5.2893 2.1465 9 6 4.3739 5.0335 4.4702 10 7 3.9326 4.2781 5.4648 11 6 4.1411 4.6264 6.7219 12 6 4.8219 5.8052 6.9933 13 6 5.2650 6.5748 5.9266 14 7 5.0272 6.1640 4.6937 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4722 0.0005 18 16 2.5616 -3.8480 0.0020 19 6 1.4415 -5.2082 0.0010 20 1 0.3762 -5.0304 0.0002 21 6 1.9282 -6.5081 0.0023 22 7 3.2265 -6.7247 0.0038 23 14 0.7407 -7.9501 0.0005 24 1 0.4285 -8.3325 -1.4001 25 1 1.3607 -9.1027 0.7019 26 1 -0.5112 -7.5612 0.6982 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 3.0416 0.9508 1.9563 33 1 1.5001 1.8409 1.9563 34 1 2.6294 3.7950 0.9284 35 1 4.1705 2.9043 0.9286 36 1 3.1478 2.9118 3.5609 37 1 3.7826 4.0039 7.5284 38 1 5.0029 6.1164 8.0115 39 1 5.7983 7.4973 6.1023 40 1 0.7584 -2.5298 0.8904 41 1 0.7590 -2.5302 -0.8896 42 1 3.5667 -7.6331 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703642168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:07 Heat of formation + Delta-G solvation = -15.124051 kcal Electronic energy + Delta-G solvation = -24919.312338 eV Core-core repulsion = 21026.385163 eV Total energy + Delta-G solvation = -3892.927175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69948 -39.70953 -39.36155 -36.27027 -35.12998 -34.30435 -32.97286 -32.43487 -31.94595 -29.23098 -27.25908 -26.17826 -25.51364 -25.12316 -24.49099 -22.08654 -21.40739 -19.22513 -18.77675 -18.11177 -17.68780 -16.72563 -16.59670 -16.34739 -16.10517 -15.77720 -15.37343 -15.34261 -15.18269 -14.80988 -14.16279 -14.14035 -14.09274 -13.81555 -13.33925 -13.02945 -12.63741 -12.63197 -12.45454 -12.21660 -11.86888 -11.82106 -11.75150 -11.48904 -11.07134 -11.02956 -10.98668 -10.75889 -10.45925 -10.32040 -9.88385 -9.81353 -9.38876 -9.38073 -9.07216 -8.58134 -8.23160 -6.50770 -6.22175 -3.92854 -0.07954 0.48636 2.25682 2.36945 2.93977 3.04105 3.21709 3.25406 3.29636 3.36992 3.40016 3.59790 3.82657 3.96716 4.19706 4.33481 4.43819 4.63982 4.68369 4.75332 4.96557 4.99950 5.11192 5.12677 5.13436 5.28020 5.36610 5.43885 5.57524 5.60856 5.65277 5.69632 5.87830 5.93408 5.97872 6.09363 6.12583 6.30890 6.62152 7.00414 7.40890 7.50286 7.58950 7.80106 8.34491 8.54158 9.23061 10.85212 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.001759 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.930968 B =15911.933453 C =16705.263602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.625 5.625 3 C 0.122 3.878 4 C -0.149 4.149 5 C 0.123 3.877 6 N -0.705 5.705 7 C 0.582 3.418 8 O -0.504 6.504 9 C 0.285 3.715 10 N -0.495 5.495 11 C 0.147 3.853 12 C -0.209 4.209 13 C 0.146 3.854 14 N -0.469 5.469 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.178 0.822 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 26.009 13.172 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.361 5.361 3 C -0.002 4.002 4 C -0.188 4.188 5 C -0.001 4.001 6 N -0.358 5.358 7 C 0.363 3.637 8 O -0.376 6.376 9 C 0.014 3.986 10 N -0.211 5.211 11 C -0.019 4.019 12 C -0.231 4.231 13 C -0.020 4.020 14 N -0.184 5.184 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.195 0.805 38 H 0.174 0.826 39 H 0.195 0.805 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.581 26.074 11.479 28.533 hybrid contribution -2.245 -0.887 1.518 2.852 sum -3.826 25.187 12.997 28.600 Atomic orbital electron populations 1.21772 0.79610 1.03102 1.01836 1.47856 1.06847 1.05586 1.75850 1.21215 0.98533 0.85066 0.95364 1.22188 1.00950 0.96364 0.99286 1.21389 1.01070 0.95915 0.81732 1.45777 1.56909 1.23081 1.10071 1.17224 0.79282 0.81735 0.85431 1.90826 1.49616 1.53585 1.43523 1.22909 0.92748 0.88425 0.94482 1.68320 1.19218 1.32730 1.00880 1.23358 0.91274 0.93641 0.93617 1.23234 1.00017 0.97221 1.02626 1.23438 0.92995 0.98774 0.86840 1.68267 1.11618 1.13973 1.24517 1.20371 0.87965 0.84605 0.75064 1.90702 1.13704 1.86789 1.47553 1.23557 1.04558 0.97262 1.04716 1.85407 1.08065 0.93363 1.96703 1.22859 0.94301 0.92216 1.58972 0.90948 1.24993 0.95668 0.98378 0.94545 1.70018 1.11738 1.21659 1.46827 0.86171 0.80258 0.80729 0.78358 1.20262 1.20759 1.19706 0.92654 0.90643 0.91407 0.90463 0.89358 0.90174 0.91037 0.90844 0.90494 0.75091 0.80481 0.82643 0.80542 0.89265 0.89255 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.24 59.85 0.61 1.39 16 2 N -0.63 -8.31 2.87 -181.58 -0.52 -8.83 16 3 C 0.12 1.34 5.41 -4.04 -0.02 1.32 16 4 C -0.15 -1.45 5.65 -26.73 -0.15 -1.60 16 5 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 6 N -0.71 -7.14 5.54 -61.02 -0.34 -7.48 16 7 C 0.58 7.27 7.85 -12.01 -0.09 7.17 16 8 O -0.50 -7.89 16.86 5.39 0.09 -7.80 16 9 C 0.28 3.14 7.60 -157.07 -1.19 1.95 16 10 N -0.49 -4.35 9.58 -11.12 -0.11 -4.46 16 11 C 0.15 0.79 11.30 -17.22 -0.19 0.59 16 12 C -0.21 -0.82 10.18 -39.17 -0.40 -1.22 16 13 C 0.15 0.89 11.30 -17.22 -0.19 0.70 16 14 N -0.47 -5.02 10.13 -11.12 -0.11 -5.13 16 15 C 0.53 9.84 7.69 -10.99 -0.08 9.76 16 16 O -0.51 -11.47 15.44 5.55 0.09 -11.38 16 17 C -0.15 -3.01 4.71 36.00 0.17 -2.84 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.75 6.44 -51.93 -0.33 0.42 16 29 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.41 3.61 7.78 -40.82 -0.32 3.30 16 37 H 0.18 0.34 8.06 -52.49 -0.42 -0.09 16 38 H 0.16 0.04 8.06 -52.49 -0.42 -0.38 16 39 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.09 1.64 7.40 -51.91 -0.38 1.25 16 41 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -38.87 381.99 -8.63 -47.50 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.61 Total: -0.72 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.38 Total: 5.52 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.35 Total: -51.23 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.18 Total: -19.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.87 -8.63 -47.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703642168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.375 kcal (2) G-P(sol) polarization free energy of solvation -38.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds