Wall clock time and date at job start Tue Mar 31 2020 20:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47369 * 89.99742 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21468 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.48536 * 119.99551 * 180.02562 * 7 6 5 10 10 N 1.32461 * 119.19057 * 359.73254 * 9 7 6 11 11 C 1.32109 * 120.76605 * 179.71919 * 10 9 7 12 12 C 1.38803 * 119.16746 * 0.54011 * 11 10 9 13 13 C 1.38796 * 118.50447 * 359.73598 * 12 11 10 14 14 N 1.32116 * 119.16750 * 359.97438 * 13 12 11 15 15 C 1.34779 * 119.99726 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99426 * 179.97438 * 15 2 1 17 17 C 1.50690 * 120.00123 * 0.02562 * 15 2 1 18 18 S 1.81000 * 109.46991 * 180.02562 * 17 15 2 19 19 C 1.76204 * 100.00152 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99596 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00334 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99794 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00178 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47048 * 89.99177 * 23 21 19 25 25 H 1.48493 * 109.46829 * 209.99661 * 23 21 19 26 26 H 1.48508 * 109.46701 * 329.99340 * 23 21 19 27 27 H 1.08994 * 109.47354 * 90.00240 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 1 2 3 29 29 H 1.09000 * 109.47206 * 330.00186 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 3 2 1 31 31 H 1.09004 * 109.47041 * 210.00060 * 3 2 1 32 32 H 1.09001 * 109.46997 * 60.00303 * 4 3 2 33 33 H 1.08996 * 109.47452 * 299.99877 * 4 3 2 34 34 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 35 35 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 36 36 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 37 37 H 1.08002 * 120.41691 * 180.27436 * 11 10 9 38 38 H 1.08001 * 120.74873 * 179.74998 * 12 11 10 39 39 H 1.07999 * 120.41584 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46976 * 299.99434 * 17 15 2 41 41 H 1.08998 * 109.47566 * 59.99491 * 17 15 2 42 42 H 0.97002 * 120.00005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2181 3.0351 1.4424 6 7 3.4628 3.4579 2.8236 7 6 4.1254 4.6053 3.0698 8 8 4.5194 5.2893 2.1465 9 6 4.3739 5.0335 4.4702 10 7 3.9326 4.2781 5.4648 11 6 4.1411 4.6264 6.7219 12 6 4.8219 5.8052 6.9933 13 6 5.2650 6.5748 5.9266 14 7 5.0272 6.1640 4.6937 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4722 0.0005 18 16 2.5616 -3.8480 0.0020 19 6 1.4415 -5.2082 0.0010 20 1 0.3762 -5.0304 0.0002 21 6 1.9282 -6.5081 0.0023 22 7 3.2265 -6.7247 0.0038 23 14 0.7407 -7.9501 0.0005 24 1 0.4285 -8.3325 -1.4001 25 1 1.3607 -9.1027 0.7019 26 1 -0.5112 -7.5612 0.6982 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 3.0416 0.9508 1.9563 33 1 1.5001 1.8409 1.9563 34 1 2.6294 3.7950 0.9284 35 1 4.1705 2.9043 0.9286 36 1 3.1478 2.9118 3.5609 37 1 3.7826 4.0039 7.5284 38 1 5.0029 6.1164 8.0115 39 1 5.7983 7.4973 6.1023 40 1 0.7584 -2.5298 0.8904 41 1 0.7590 -2.5302 -0.8896 42 1 3.5667 -7.6331 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703642168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:06 Heat of formation + Delta-G solvation = -44.756688 kcal Electronic energy + Delta-G solvation = -24920.597306 eV Core-core repulsion = 21026.385163 eV Total energy + Delta-G solvation = -3894.212143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.27881 -40.88339 -40.37422 -37.35050 -36.18399 -34.90135 -34.57903 -33.63388 -32.79858 -30.63080 -28.15109 -27.68314 -26.97127 -25.67425 -25.30437 -22.97441 -22.21519 -20.60100 -19.54835 -19.48097 -18.70494 -18.06255 -17.36181 -17.09409 -16.98734 -16.87434 -16.72629 -16.59216 -16.05047 -16.01000 -15.68206 -15.01043 -14.83807 -14.55456 -14.51667 -14.51080 -14.24062 -13.54769 -13.45467 -13.27487 -13.16252 -12.98066 -12.87692 -12.71232 -12.57779 -12.36247 -12.07923 -11.87178 -11.68969 -11.35221 -11.13706 -10.87138 -10.79759 -10.43182 -10.25379 -10.25126 -9.69797 -8.66664 -8.33956 -6.12309 -0.64593 0.04533 1.26724 1.43031 1.46222 1.48616 1.54345 1.58236 1.69032 2.16922 2.28580 2.76140 2.83209 3.00170 3.24510 3.28187 3.63381 3.71556 3.84709 3.91631 3.98769 4.07431 4.13488 4.24676 4.35741 4.39047 4.43599 4.50541 4.56245 4.67660 4.75994 4.79792 4.98285 5.04675 5.09912 5.24720 5.26167 5.42259 5.60236 5.85632 6.20259 6.21101 6.29270 6.79534 6.97772 7.07195 7.17177 8.75240 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.001759 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.930968 B =15911.933453 C =16705.263602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.118 3.882 4 C -0.133 4.133 5 C 0.126 3.874 6 N -0.695 5.695 7 C 0.577 3.423 8 O -0.549 6.549 9 C 0.254 3.746 10 N -0.506 5.506 11 C 0.135 3.865 12 C -0.179 4.179 13 C 0.130 3.870 14 N -0.509 5.509 15 C 0.528 3.472 16 O -0.565 6.565 17 C -0.123 4.123 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.257 1.257 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.420 0.580 37 H 0.214 0.786 38 H 0.202 0.798 39 H 0.208 0.792 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 27.085 15.231 31.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.005 4.005 4 C -0.172 4.172 5 C 0.003 3.997 6 N -0.348 5.348 7 C 0.360 3.640 8 O -0.425 6.425 9 C -0.016 4.016 10 N -0.224 5.224 11 C -0.031 4.031 12 C -0.200 4.200 13 C -0.035 4.035 14 N -0.225 5.225 15 C 0.316 3.684 16 O -0.443 6.443 17 C -0.275 4.275 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.180 1.180 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.257 0.743 37 H 0.231 0.769 38 H 0.219 0.781 39 H 0.224 0.776 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.566 27.179 13.565 30.718 hybrid contribution -1.361 -1.044 1.004 1.988 sum -5.928 26.136 14.569 30.504 Atomic orbital electron populations 1.22123 0.76703 1.04915 1.03437 1.47842 1.08580 1.04560 1.73384 1.21426 0.98104 0.84702 0.96293 1.22008 1.01565 0.95217 0.98381 1.21340 1.00462 0.96273 0.81653 1.45732 1.56089 1.22506 1.10435 1.17622 0.78632 0.81626 0.86158 1.90777 1.51641 1.55002 1.45076 1.22493 0.95259 0.89717 0.94102 1.68282 1.19492 1.32685 1.01933 1.24121 0.91109 0.94764 0.93067 1.23724 0.96751 0.95424 1.04093 1.24100 0.93188 1.00156 0.86059 1.68185 1.12615 1.14415 1.27273 1.20174 0.87290 0.85622 0.75315 1.90688 1.15727 1.87513 1.50395 1.23379 1.02671 0.95014 1.06393 1.85610 1.12806 0.97445 1.97030 1.23199 0.94637 0.92615 1.58817 0.89838 1.26142 0.97591 1.01727 0.93754 1.70191 1.14151 1.22439 1.48040 0.84947 0.77921 0.76292 0.78780 1.19360 1.20364 1.18031 0.91114 0.90780 0.87766 0.86412 0.91865 0.92939 0.88520 0.89460 0.92291 0.74274 0.76915 0.78068 0.77552 0.87289 0.87542 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.24 127.77 1.31 2.39 16 2 N -0.61 -15.12 2.87 -846.77 -2.43 -17.55 16 3 C 0.12 2.42 5.41 86.38 0.47 2.89 16 4 C -0.13 -2.46 5.65 30.59 0.17 -2.29 16 5 C 0.13 2.46 5.67 86.38 0.49 2.95 16 6 N -0.69 -14.44 5.54 -465.29 -2.58 -17.02 16 7 C 0.58 15.20 7.85 86.99 0.68 15.88 16 8 O -0.55 -18.36 16.86 -3.62 -0.06 -18.42 16 9 C 0.25 5.76 7.60 137.68 1.05 6.81 16 10 N -0.51 -8.56 9.58 -189.09 -1.81 -10.37 16 11 C 0.13 1.10 11.30 84.79 0.96 2.06 16 12 C -0.18 -0.81 10.18 22.54 0.23 -0.58 16 13 C 0.13 1.37 11.30 84.78 0.96 2.33 16 14 N -0.51 -11.05 10.13 -189.09 -1.92 -12.97 16 15 C 0.53 19.58 7.69 87.65 0.67 20.25 16 16 O -0.56 -26.34 15.44 -3.04 -0.05 -26.39 16 17 C -0.12 -4.89 4.71 71.23 0.34 -4.55 16 18 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 19 C -0.54 -31.04 9.50 67.95 0.65 -30.40 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 23 Si 1.00 43.38 29.55 68.60 2.03 45.40 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.22 6.44 -2.39 -0.02 1.20 16 29 H 0.10 0.93 8.07 -2.39 -0.02 0.92 16 30 H 0.12 1.53 8.07 -2.39 -0.02 1.51 16 31 H 0.06 1.66 7.42 -2.38 -0.02 1.65 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.42 7.39 7.78 -92.71 -0.72 6.67 16 37 H 0.21 0.01 8.06 -2.91 -0.02 -0.01 16 38 H 0.20 -0.99 8.06 -2.91 -0.02 -1.01 16 39 H 0.21 0.60 8.06 -2.91 -0.02 0.57 16 40 H 0.11 3.86 7.40 -2.39 -0.02 3.84 16 41 H 0.11 3.82 8.11 -2.40 -0.02 3.80 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -91.95 381.99 1.07 -90.88 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.33 Total: 13.28 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 8.44 Total: 18.92 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -8.45 Total: -113.80 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.11 Total: -44.81 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -91.95 1.07 -90.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703642168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.124 kcal (2) G-P(sol) polarization free energy of solvation -91.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds