Wall clock time and date at job start Tue Mar 31 2020 20:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34498 * 126.47225 * 2 1 4 4 N 1.30861 * 109.16228 * 180.25825 * 3 2 1 5 5 C 1.33323 * 109.68511 * 359.76775 * 4 3 2 6 6 C 1.36669 * 107.78434 * 359.97438 * 5 4 3 7 7 C 1.46759 * 126.84185 * 179.97438 * 6 5 4 8 8 O 1.21684 * 119.99834 * 184.93338 * 7 6 5 9 9 N 1.34772 * 120.00173 * 4.93189 * 7 6 5 10 10 C 1.46503 * 120.00169 * 174.59254 * 9 7 6 11 11 H 1.09001 * 110.64068 * 325.70286 * 10 9 7 12 12 C 1.55159 * 110.72359 * 202.55890 * 10 9 7 13 13 C 1.54906 * 101.58263 * 205.95922 * 12 10 9 14 14 N 1.47417 * 104.83618 * 37.00740 * 13 12 10 15 15 C 1.34779 * 125.65213 * 155.82625 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50694 * 119.99568 * 0.02562 * 15 14 13 18 18 S 1.80999 * 109.47006 * 179.97438 * 17 15 14 19 19 C 1.76206 * 100.00111 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00046 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99842 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00366 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47031 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47119 * 120.00160 * 23 21 19 26 26 H 1.48503 * 109.47529 * 240.00405 * 23 21 19 27 27 C 1.47026 * 108.70205 * 335.87266 * 14 13 12 28 28 H 1.09007 * 109.46584 * 272.78603 * 1 2 3 29 29 H 1.09003 * 109.47282 * 32.77984 * 1 2 3 30 30 H 1.08994 * 109.47464 * 152.78638 * 1 2 3 31 31 H 1.07996 * 125.42236 * 0.05551 * 3 2 1 32 32 H 1.07994 * 126.10398 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00087 * 354.59072 * 9 7 6 34 34 H 1.08999 * 111.00033 * 324.03229 * 12 10 9 35 35 H 1.09000 * 111.00293 * 87.84378 * 12 10 9 36 36 H 1.08992 * 110.36594 * 155.85179 * 13 12 10 37 37 H 1.09009 * 110.36355 * 278.05961 * 13 12 10 38 38 H 1.09000 * 109.47596 * 300.00055 * 17 15 14 39 39 H 1.09006 * 109.47089 * 60.00300 * 17 15 14 40 40 H 0.96994 * 119.99857 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.88547 * 241.63927 * 27 14 13 42 42 H 1.09006 * 109.88014 * 120.47092 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0816 0.0000 4 7 3.5138 0.6922 -0.0056 5 6 3.5691 -0.6399 -0.0043 6 6 2.2862 -1.1109 0.0031 7 6 1.8649 -2.5167 0.0065 8 8 0.6840 -2.7982 -0.0775 9 7 2.7859 -3.4960 0.1026 10 6 2.3602 -4.8924 0.2254 11 1 1.4376 -4.9637 0.8014 12 6 3.4785 -5.7525 0.8714 13 6 3.1556 -7.1581 0.3059 14 7 2.6991 -6.9139 -1.0744 15 6 2.7445 -7.8036 -2.0858 16 8 2.3397 -7.4924 -3.1858 17 6 3.2984 -9.1850 -1.8496 18 16 3.2238 -10.1360 -3.3879 19 6 3.9122 -11.6619 -2.8380 20 1 4.2264 -11.7736 -1.8108 21 6 4.0498 -12.7208 -3.7248 22 7 3.6664 -12.5849 -4.9767 23 14 4.7802 -14.3382 -3.1420 24 1 5.1291 -14.2336 -1.7024 25 1 3.7881 -15.4266 -3.3326 26 1 6.0037 -14.6405 -3.9275 27 6 2.1869 -5.5387 -1.1652 28 1 -0.3633 0.0500 1.0265 29 1 -0.3634 0.8640 -0.5564 30 1 -0.3634 -0.9138 -0.4699 31 1 1.9289 2.1080 0.0009 32 1 4.4673 -1.2395 -0.0075 33 1 3.7306 -3.2762 0.0905 34 1 4.4643 -5.4183 0.5480 35 1 3.4014 -5.7409 1.9586 36 1 4.0498 -7.7812 0.3051 37 1 2.3658 -7.6299 0.8906 38 1 4.3341 -9.1096 -1.5185 39 1 2.7076 -9.6873 -1.0835 40 1 3.7629 -13.3248 -5.5965 41 1 1.1318 -5.5533 -1.4384 42 1 2.7565 -4.9794 -1.9075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703802490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:10 Heat of formation + Delta-G solvation = 1.657573 kcal Electronic energy + Delta-G solvation = -25721.718314 eV Core-core repulsion = 21829.518845 eV Total energy + Delta-G solvation = -3892.199469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.66375 -40.35563 -39.21466 -37.29593 -34.93946 -34.18041 -32.43957 -31.55261 -30.16274 -29.72611 -27.79688 -27.55877 -25.50795 -24.21321 -23.16532 -22.03655 -21.21847 -20.58322 -19.37801 -18.43189 -17.71430 -17.14249 -16.70738 -16.42658 -16.36958 -15.77139 -15.21966 -14.81767 -14.78613 -14.71299 -14.45809 -14.07687 -13.96749 -13.81504 -13.55627 -13.38872 -13.20515 -12.92435 -12.59043 -12.53262 -12.22532 -11.96934 -11.81629 -11.20376 -11.07769 -11.02644 -10.85470 -10.76980 -10.30265 -10.20086 -9.83082 -9.70404 -9.40662 -9.08397 -9.08204 -8.56495 -8.23901 -6.51487 -6.22636 -3.93487 0.83654 1.96352 2.37519 2.66419 2.88650 3.00164 3.04965 3.20866 3.25971 3.30618 3.59872 3.98495 4.10749 4.18734 4.24294 4.27667 4.34936 4.58177 4.64928 4.71087 4.87448 4.90516 5.04015 5.04139 5.09695 5.12582 5.38304 5.41914 5.53316 5.58036 5.63732 5.67002 5.78182 5.89419 5.95585 6.04548 6.11026 6.35490 6.52994 6.95013 7.40216 7.58426 7.60796 7.69250 8.34385 8.52726 9.22662 10.84858 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032077 B = 0.001853 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.682176 B =15105.139477 C =15300.211956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.426 5.426 3 C 0.207 3.793 4 N -0.497 5.497 5 C 0.040 3.960 6 C -0.089 4.089 7 C 0.598 3.402 8 O -0.539 6.539 9 N -0.707 5.707 10 C 0.139 3.861 11 H 0.108 0.892 12 C -0.139 4.139 13 C 0.102 3.898 14 N -0.626 5.626 15 C 0.548 3.452 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.099 3.901 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.214 0.786 32 H 0.179 0.821 33 H 0.406 0.594 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 25.516 16.949 30.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.106 5.106 3 C -0.075 4.075 4 N -0.215 5.215 5 C -0.115 4.115 6 C -0.206 4.206 7 C 0.385 3.615 8 O -0.417 6.417 9 N -0.359 5.359 10 C 0.034 3.966 11 H 0.126 0.874 12 C -0.177 4.177 13 C -0.021 4.021 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.386 6.386 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.025 4.025 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.230 0.770 32 H 0.196 0.804 33 H 0.242 0.758 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.423 26.147 15.006 30.341 hybrid contribution 0.656 -1.697 1.627 2.441 sum -2.767 24.450 16.633 29.700 Atomic orbital electron populations 1.22369 0.75049 1.06215 1.04292 1.45290 1.08460 1.05732 1.51150 1.25200 0.85524 0.93711 1.03053 1.70178 1.19056 1.12092 1.20152 1.22674 0.95122 0.91437 1.02226 1.20705 0.91622 0.88790 1.19476 1.16774 0.85561 0.83189 0.75998 1.90818 1.16942 1.83892 1.50012 1.45544 1.09741 1.05678 1.74909 1.22015 0.99317 0.79147 0.96155 0.87385 1.23105 0.98706 0.94593 1.01303 1.22267 1.00593 0.96586 0.82684 1.48447 1.64667 1.13022 1.10339 1.20065 0.77910 0.85502 0.82847 1.90722 1.46409 1.78447 1.23046 1.23505 1.03295 0.95004 1.07866 1.85446 1.82589 1.08989 1.06432 1.22896 1.47816 0.98370 0.99193 0.90843 1.25002 0.95222 0.98861 0.94552 1.70028 1.44490 1.32300 1.03418 0.86109 0.78717 0.81834 0.78778 1.19605 1.20567 1.20561 1.22222 1.00511 0.83013 0.96759 0.90051 0.89237 0.87322 0.77003 0.80394 0.75837 0.89616 0.88850 0.89599 0.90815 0.89228 0.89198 0.92217 0.90790 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.80 59.85 0.65 0.97 16 2 N -0.43 -3.20 3.17 -121.97 -0.39 -3.59 16 3 C 0.21 1.41 12.52 -90.57 -1.13 0.27 16 4 N -0.50 -4.58 11.20 -14.43 -0.16 -4.74 16 5 C 0.04 0.33 11.37 -17.47 -0.20 0.13 16 6 C -0.09 -0.78 6.91 -82.14 -0.57 -1.35 16 7 C 0.60 5.79 7.78 -12.82 -0.10 5.69 16 8 O -0.54 -6.78 14.55 5.20 0.08 -6.70 16 9 N -0.71 -5.22 5.11 -53.31 -0.27 -5.49 16 10 C 0.14 1.17 3.23 -66.09 -0.21 0.96 16 11 H 0.11 0.97 7.70 -51.93 -0.40 0.57 16 12 C -0.14 -0.87 6.70 -24.58 -0.16 -1.03 16 13 C 0.10 0.96 6.69 -2.54 -0.02 0.94 16 14 N -0.63 -8.81 3.33 -170.52 -0.57 -9.38 16 15 C 0.55 10.60 7.87 -10.99 -0.09 10.51 16 16 O -0.51 -12.13 16.19 5.56 0.09 -12.04 16 17 C -0.15 -2.96 5.16 36.00 0.19 -2.77 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 23 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.10 1.24 6.62 -3.06 -0.02 1.22 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.11 0.81 6.27 -51.93 -0.33 0.48 16 31 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.18 0.90 7.46 -52.49 -0.39 0.51 16 33 H 0.41 1.95 7.49 -40.82 -0.31 1.64 16 34 H 0.09 0.46 8.01 -51.93 -0.42 0.05 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.77 7.47 -51.93 -0.39 0.38 16 37 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.09 1.65 7.85 -51.92 -0.41 1.25 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -39.20 372.18 -9.14 -48.34 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.55 Total: -1.64 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.47 Total: 2.64 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.65 Total: -48.61 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.20 -9.14 -48.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703802490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.995 kcal (2) G-P(sol) polarization free energy of solvation -39.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds