Wall clock time and date at job start Tue Mar 31 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35848 * 126.13628 * 2 1 4 4 N 1.30173 * 109.00382 * 180.02562 * 3 2 1 5 5 C 1.35767 * 108.86408 * 359.97438 * 4 3 2 6 6 C 1.47324 * 126.23326 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99936 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99763 * 0.29609 * 6 5 4 9 9 C 1.46505 * 119.99724 * 179.72654 * 8 6 5 10 10 H 1.08997 * 112.84861 * 336.19585 * 9 8 6 11 11 C 1.53774 * 113.61385 * 107.50723 * 9 8 6 12 12 C 1.53777 * 87.08381 * 89.11575 * 11 9 8 13 13 H 1.09000 * 113.61198 * 270.88400 * 12 11 9 14 14 N 1.46499 * 113.69214 * 139.99061 * 12 11 9 15 15 C 1.34776 * 119.99911 * 107.46370 * 14 12 11 16 16 O 1.21278 * 120.00181 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.00138 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47142 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99704 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00362 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99766 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99786 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46864 * 90.00459 * 23 21 19 25 25 H 1.48500 * 109.47264 * 210.00171 * 23 21 19 26 26 H 1.48498 * 109.47312 * 330.00431 * 23 21 19 27 27 C 1.53783 * 87.08256 * 25.43074 * 12 11 9 28 28 C 1.35380 * 126.13067 * 180.31517 * 2 1 3 29 29 H 1.09002 * 109.47155 * 89.97277 * 1 2 3 30 30 H 1.08997 * 109.47338 * 209.97721 * 1 2 3 31 31 H 1.08999 * 109.47141 * 329.97244 * 1 2 3 32 32 H 1.07996 * 125.49990 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00483 * 359.73087 * 8 6 5 34 34 H 1.09001 * 113.61238 * 203.66364 * 11 9 8 35 35 H 1.09000 * 113.61679 * 334.56289 * 11 9 8 36 36 H 0.96991 * 120.00332 * 287.46743 * 14 12 11 37 37 H 1.09009 * 109.46724 * 300.00036 * 17 15 14 38 38 H 1.08992 * 109.47394 * 59.99622 * 17 15 14 39 39 H 0.97004 * 119.99585 * 179.97438 * 22 21 19 40 40 H 1.08995 * 113.61832 * 220.01826 * 27 12 11 41 41 H 1.09003 * 113.61236 * 89.11745 * 27 12 11 42 42 H 1.07998 * 126.57070 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7137 -0.0006 5 6 3.5511 -0.6434 -0.0003 6 6 4.7652 -1.4779 -0.0013 7 8 4.6697 -2.6903 -0.0015 8 7 5.9816 -0.8976 0.0034 9 6 7.1890 -1.7275 0.0085 10 1 7.0156 -2.7245 0.4134 11 6 7.9421 -1.7274 -1.3322 12 6 8.7152 -0.5058 -0.8081 13 1 8.2342 0.4456 -1.0351 14 7 10.1395 -0.5192 -1.1506 15 6 10.6155 0.3257 -2.0865 16 8 9.8648 1.0975 -2.6449 17 6 12.0806 0.3116 -2.4394 18 16 12.4053 1.5511 -3.7178 19 6 14.1395 1.3236 -3.9309 20 1 14.6630 0.5826 -3.3451 21 6 14.8330 2.0977 -4.8509 22 7 16.1285 1.9274 -5.0105 23 14 13.9277 3.3799 -5.8637 24 1 13.9348 4.6770 -5.1407 25 1 14.6032 3.5412 -7.1763 26 1 12.5256 2.9409 -6.0792 27 6 8.4175 -1.0239 0.6089 28 6 2.2632 -1.0934 -0.0060 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 1.9258 2.1221 0.0004 33 1 6.0578 0.0694 0.0036 34 1 8.5668 -2.6080 -1.4821 35 1 7.3067 -1.5070 -2.1899 36 1 10.7400 -1.1362 -0.7039 37 1 12.6702 0.5423 -1.5520 38 1 12.3552 -0.6753 -2.8115 39 1 16.6131 2.4681 -5.6538 40 1 8.1660 -0.2355 1.3183 41 1 9.1722 -1.7121 0.9897 42 1 1.9421 -2.1245 -0.0113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703904783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:01 Heat of formation + Delta-G solvation = -17.319214 kcal Electronic energy + Delta-G solvation = -25128.691548 eV Core-core repulsion = 21235.669184 eV Total energy + Delta-G solvation = -3893.022365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.13236 -41.44521 -40.30769 -38.91891 -35.33440 -34.97346 -34.66536 -33.42991 -30.93265 -30.61350 -28.14115 -27.85278 -26.74692 -25.70113 -24.02253 -22.16381 -21.93635 -21.27510 -20.65378 -19.81452 -18.91543 -17.94275 -17.73373 -17.12113 -16.94506 -16.89341 -16.83641 -16.46299 -15.87079 -15.67282 -15.52753 -15.06022 -14.92403 -14.82061 -14.74309 -14.41431 -14.00795 -13.70755 -13.45536 -13.44455 -13.36113 -13.34942 -13.18554 -13.00687 -12.61163 -11.92881 -11.87660 -11.63653 -11.40440 -11.16702 -11.12483 -10.94639 -10.73599 -10.52512 -10.20393 -10.00469 -9.61780 -8.98854 -8.51196 -6.21759 0.54024 1.00017 1.31363 1.42126 1.47390 1.56564 1.56828 1.72907 2.23469 2.24746 2.29362 2.49253 2.73334 2.87070 3.38761 3.41152 3.56881 3.85294 3.87385 3.91048 3.99724 4.04566 4.19796 4.26292 4.43943 4.47931 4.48602 4.58000 4.73177 4.76771 4.80313 4.87505 5.00495 5.01902 5.05849 5.40614 5.43004 5.62028 5.71199 6.09016 6.11835 6.43896 6.51819 6.83852 6.94177 7.19359 7.23063 8.61136 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.001834 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.823864 B =15266.719203 C =16279.108144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.454 5.454 3 C 0.192 3.808 4 N -0.501 5.501 5 C -0.105 4.105 6 C 0.603 3.397 7 O -0.579 6.579 8 N -0.696 5.696 9 C 0.124 3.876 10 H 0.110 0.890 11 C -0.161 4.161 12 C 0.117 3.883 13 H 0.092 0.908 14 N -0.699 5.699 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.179 6.179 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.238 1.238 27 C -0.127 4.127 28 C 0.040 3.960 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.249 0.751 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.420 0.580 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.002 -6.755 16.425 38.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.134 5.134 3 C -0.092 4.092 4 N -0.220 5.220 5 C -0.233 4.233 6 C 0.392 3.608 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.018 3.982 10 H 0.128 0.872 11 C -0.201 4.201 12 C 0.012 3.988 13 H 0.110 0.890 14 N -0.352 5.352 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.262 4.262 18 S 0.048 5.952 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.162 1.162 27 C -0.166 4.166 28 C -0.101 4.101 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.265 0.735 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.258 0.742 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.148 0.852 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -34.575 -5.772 15.438 38.303 hybrid contribution 0.906 -0.638 0.008 1.108 sum -33.670 -6.410 15.446 37.594 Atomic orbital electron populations 1.22544 0.72683 1.07114 1.05508 1.45647 1.09990 1.05759 1.51984 1.25963 0.84404 0.95248 1.03585 1.70550 1.21943 1.10129 1.19361 1.20525 0.93491 0.91159 1.18142 1.17195 0.82769 0.86178 0.74692 1.90754 1.87402 1.14634 1.53111 1.45504 1.04510 1.10893 1.73643 1.21697 0.83566 0.96167 0.96788 0.87184 1.23970 0.98882 0.99535 0.97729 1.22636 0.80454 0.98902 0.96846 0.88952 1.45693 1.10056 1.39223 1.40186 1.20034 0.88874 0.79868 0.79194 1.90688 1.59706 1.40812 1.53107 1.23287 0.96217 1.03886 1.02834 1.84741 1.09174 1.50815 1.50495 1.22470 0.92308 1.25456 1.27424 0.91885 1.25551 0.95133 0.98365 0.96869 1.70018 1.08274 1.41165 1.35978 0.85874 0.81005 0.80123 0.79412 1.18636 1.18324 1.16237 1.23687 0.96684 1.01204 0.95027 1.22851 0.89798 0.94509 1.02976 0.88885 0.87957 0.86518 0.73529 0.75143 0.87149 0.92856 0.74248 0.86631 0.86779 0.91383 0.89106 0.85202 0.78158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.10 11.15 127.77 1.42 1.33 16 2 N -0.45 -3.90 3.13 -551.86 -1.72 -5.62 16 3 C 0.19 2.18 12.55 180.10 2.26 4.44 16 4 N -0.50 -9.94 11.01 -188.81 -2.08 -12.02 16 5 C -0.11 -2.25 6.98 40.50 0.28 -1.97 16 6 C 0.60 14.99 7.81 86.63 0.68 15.67 16 7 O -0.58 -17.08 16.48 -4.10 -0.07 -17.15 16 8 N -0.70 -14.81 5.26 -443.39 -2.33 -17.14 16 9 C 0.12 2.27 4.32 45.52 0.20 2.46 16 10 H 0.11 2.07 7.46 -2.39 -0.02 2.06 16 11 C -0.16 -3.32 7.68 31.12 0.24 -3.08 16 12 C 0.12 2.49 4.11 45.52 0.19 2.67 16 13 H 0.09 2.46 7.46 -2.39 -0.02 2.44 16 14 N -0.70 -16.15 5.36 -440.04 -2.36 -18.51 16 15 C 0.53 18.48 7.85 87.66 0.69 19.17 16 16 O -0.56 -24.64 15.46 -3.02 -0.05 -24.69 16 17 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 18 S -0.18 -9.15 18.55 -56.49 -1.05 -10.20 16 19 C -0.53 -31.06 10.04 67.95 0.68 -30.38 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.74 5.50 84.86 0.47 3.20 16 22 N -0.92 -56.14 13.97 21.65 0.30 -55.84 16 23 Si 0.91 45.53 27.74 68.60 1.90 47.44 16 24 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 27 C -0.13 -1.77 7.58 31.12 0.24 -1.54 16 28 C 0.04 0.60 11.26 83.72 0.94 1.54 16 29 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.25 0.58 8.06 -2.91 -0.02 0.55 16 33 H 0.41 8.48 8.41 -92.71 -0.78 7.70 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 6.60 8.73 -92.71 -0.81 5.79 16 37 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 38 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 39 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.13 1.14 8.12 -2.39 -0.02 1.12 16 42 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -87.77 378.67 0.72 -87.05 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.56 Total: 16.92 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 8.72 Total: 9.76 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -8.19 Total: -109.14 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.11 Total: -41.83 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.20 kcal Total: -87.77 0.72 -87.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703904783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.733 kcal (2) G-P(sol) polarization free energy of solvation -87.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds