Wall clock time and date at job start Tue Mar 31 2020 20:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34498 * 126.47277 * 2 1 4 4 N 1.30856 * 109.16306 * 180.29543 * 3 2 1 5 5 C 1.33326 * 109.68526 * 359.73145 * 4 3 2 6 6 C 1.36663 * 107.78284 * 0.02562 * 5 4 3 7 7 C 1.46767 * 126.84139 * 180.02562 * 6 5 4 8 8 O 1.21682 * 119.99614 * 184.90048 * 7 6 5 9 9 N 1.34779 * 120.00266 * 4.89805 * 7 6 5 10 10 C 1.46497 * 120.00065 * 174.54731 * 9 7 6 11 11 C 1.50700 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.30999 * 119.99483 * 125.27941 * 11 10 9 13 13 C 1.50707 * 119.99839 * 179.72261 * 12 11 10 14 14 N 1.46502 * 109.47149 * 124.99586 * 13 12 11 15 15 C 1.34770 * 119.99899 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00344 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00148 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.47349 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99770 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00582 * 0.02562 * 19 18 17 21 21 C 1.38806 * 119.99546 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00385 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99660 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47282 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47160 * 119.99904 * 23 21 19 26 26 H 1.48499 * 109.46805 * 239.99939 * 23 21 19 27 27 H 1.09002 * 109.46642 * 272.03717 * 1 2 3 28 28 H 1.08995 * 109.47554 * 32.03322 * 1 2 3 29 29 H 1.08997 * 109.47504 * 152.03517 * 1 2 3 30 30 H 1.07994 * 125.42244 * 0.03344 * 3 2 1 31 31 H 1.07991 * 126.10891 * 179.97438 * 5 4 3 32 32 H 0.96998 * 119.99807 * 354.54714 * 9 7 6 33 33 H 1.09001 * 109.47021 * 59.99805 * 10 9 7 34 34 H 1.08998 * 109.46984 * 300.00032 * 10 9 7 35 35 H 1.07999 * 120.00089 * 304.99939 * 11 10 9 36 36 H 1.07999 * 120.00368 * 359.71997 * 12 11 10 37 37 H 1.08997 * 109.47224 * 245.00217 * 13 12 11 38 38 H 1.09007 * 109.46690 * 5.00088 * 13 12 11 39 39 H 0.97001 * 119.99994 * 0.02562 * 14 13 12 40 40 H 1.09002 * 109.47021 * 300.00626 * 17 15 14 41 41 H 1.09006 * 109.46573 * 59.99981 * 17 15 14 42 42 H 0.97000 * 120.00364 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0816 0.0000 4 7 3.5138 0.6922 -0.0064 5 6 3.5691 -0.6399 -0.0048 6 6 2.2862 -1.1109 0.0024 7 6 1.8649 -2.5168 0.0070 8 8 0.6840 -2.7982 -0.0767 9 7 2.7859 -3.4960 0.1039 10 6 2.3602 -4.8922 0.2289 11 6 3.5738 -5.7811 0.3191 12 6 3.7061 -6.6086 1.3260 13 6 4.9166 -7.5021 1.4129 14 7 5.5816 -7.2992 2.7025 15 6 6.6949 -7.9966 3.0036 16 8 7.1464 -8.7918 2.2069 17 6 7.3787 -7.7884 4.3303 18 16 8.8326 -8.8614 4.4347 19 6 9.4202 -8.4253 6.0375 20 1 8.8922 -7.6881 6.6242 21 6 10.5618 -9.0292 6.5462 22 7 11.2056 -9.9272 5.8311 23 14 11.1843 -8.5674 8.2459 24 1 10.2895 -7.5414 8.8389 25 1 11.1983 -9.7732 9.1124 26 1 12.5605 -8.0200 8.1370 27 1 -0.3633 0.0365 1.0271 28 1 -0.3634 0.8711 -0.5450 29 1 -0.3634 -0.9076 -0.4819 30 1 1.9289 2.1080 0.0005 31 1 4.4672 -1.2396 -0.0093 32 1 3.7306 -3.2763 0.0909 33 1 1.7697 -5.1715 -0.6437 34 1 1.7563 -5.0087 1.1288 35 1 4.3321 -5.7392 -0.4488 36 1 2.9477 -6.6505 2.0938 37 1 4.6069 -8.5433 1.3236 38 1 5.6071 -7.2579 0.6056 39 1 5.2207 -6.6630 3.3395 40 1 7.6879 -6.7470 4.4202 41 1 6.6881 -8.0333 5.1373 42 1 12.0032 -10.3495 6.1867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704978300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:47 Heat of formation + Delta-G solvation = 6.279172 kcal Electronic energy + Delta-G solvation = -24328.046449 eV Core-core repulsion = 20436.047387 eV Total energy + Delta-G solvation = -3891.999062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.70378 -39.81686 -39.21928 -36.75667 -35.16231 -34.41758 -33.02977 -32.43869 -30.81844 -29.61055 -27.62230 -27.52245 -25.51454 -24.47753 -23.02155 -21.83474 -20.97807 -20.55043 -19.86214 -18.46285 -17.88744 -16.72674 -16.68209 -16.55317 -16.25898 -15.99253 -15.54175 -15.22337 -14.81424 -14.79468 -14.57089 -14.17091 -14.08949 -13.93881 -13.74078 -13.45378 -13.26663 -13.14138 -12.84382 -12.76723 -12.51830 -11.82034 -11.59779 -11.07719 -11.03039 -10.95056 -10.76941 -10.41607 -10.25246 -10.06344 -9.81698 -9.63503 -9.36631 -9.11566 -9.08780 -8.92229 -8.24749 -6.51364 -6.22816 -3.93443 0.78575 1.39230 2.02024 2.33800 2.84633 2.90008 3.05312 3.07260 3.21106 3.28464 3.33843 3.74768 4.00536 4.16364 4.19248 4.20416 4.28740 4.54263 4.55570 4.64675 4.85054 4.90593 5.01022 5.03926 5.12572 5.16114 5.20702 5.38565 5.53206 5.57847 5.73459 5.77423 5.86935 5.95179 6.10389 6.12005 6.20095 6.48531 6.55417 6.89743 7.36699 7.59006 7.62262 7.65268 8.34478 8.56232 9.22773 10.84671 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.001585 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.840009 B =17659.467210 C =18961.570275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.428 5.428 3 C 0.208 3.792 4 N -0.496 5.496 5 C 0.042 3.958 6 C -0.092 4.092 7 C 0.597 3.403 8 O -0.547 6.547 9 N -0.713 5.713 10 C 0.154 3.846 11 C -0.168 4.168 12 C -0.137 4.137 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.214 0.786 31 H 0.180 0.820 32 H 0.407 0.593 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.768 19.999 -12.788 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.108 5.108 3 C -0.074 4.074 4 N -0.213 5.213 5 C -0.113 4.113 6 C -0.208 4.208 7 C 0.384 3.616 8 O -0.426 6.426 9 N -0.365 5.365 10 C 0.031 3.969 11 C -0.187 4.187 12 C -0.156 4.156 13 C 0.023 3.977 14 N -0.392 5.392 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.230 0.770 31 H 0.197 0.803 32 H 0.242 0.758 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.249 18.832 -14.190 33.114 hybrid contribution -0.607 1.152 2.314 2.655 sum -23.856 19.984 -11.876 33.309 Atomic orbital electron populations 1.22341 0.75147 1.05950 1.04368 1.45288 1.08400 1.05751 1.51340 1.25222 0.85524 0.93711 1.02969 1.70193 1.19017 1.12108 1.20029 1.22709 0.95164 0.91447 1.01976 1.20710 0.91635 0.88798 1.19698 1.16748 0.85450 0.83201 0.76209 1.90793 1.16995 1.83998 1.50772 1.45605 1.09928 1.06223 1.74724 1.20378 0.95056 0.78481 1.02956 1.22899 0.98792 0.97400 0.99628 1.23082 0.98024 0.96438 0.98074 1.20305 0.91462 0.99082 0.86860 1.45973 1.28844 1.45362 1.18986 1.20341 0.79507 0.79758 0.88599 1.90709 1.63730 1.34512 1.50149 1.23533 1.04349 1.06383 0.96124 1.85402 1.23515 1.51215 1.23270 1.22911 1.14635 1.28546 1.02285 0.90848 1.24994 0.95564 0.94566 0.98457 1.70021 1.17961 1.25241 1.37036 0.86115 0.78678 0.78415 0.82279 1.19615 1.20562 1.20555 0.90053 0.89262 0.87513 0.76973 0.80323 0.75803 0.90079 0.90646 0.85906 0.86240 0.90425 0.90949 0.76677 0.89156 0.89177 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 10.79 59.85 0.65 0.92 16 2 N -0.43 -2.95 3.17 -121.98 -0.39 -3.34 16 3 C 0.21 1.34 12.52 -90.57 -1.13 0.20 16 4 N -0.50 -4.51 11.20 -14.43 -0.16 -4.67 16 5 C 0.04 0.33 11.37 -17.47 -0.20 0.13 16 6 C -0.09 -0.75 6.91 -82.14 -0.57 -1.32 16 7 C 0.60 5.20 7.78 -12.81 -0.10 5.10 16 8 O -0.55 -6.17 14.83 5.20 0.08 -6.10 16 9 N -0.71 -4.50 5.53 -62.77 -0.35 -4.85 16 10 C 0.15 0.94 6.12 -5.19 -0.03 0.91 16 11 C -0.17 -0.97 9.24 -36.03 -0.33 -1.30 16 12 C -0.14 -0.93 9.24 -36.02 -0.33 -1.26 16 13 C 0.15 1.49 6.11 -5.19 -0.03 1.46 16 14 N -0.74 -9.05 5.55 -61.47 -0.34 -9.39 16 15 C 0.53 9.55 7.85 -10.99 -0.09 9.47 16 16 O -0.52 -11.45 15.86 5.56 0.09 -11.36 16 17 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.11 0.65 6.31 -51.93 -0.33 0.33 16 30 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.18 0.92 7.46 -52.49 -0.39 0.53 16 32 H 0.41 1.77 7.41 -40.82 -0.30 1.47 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 35 H 0.12 0.65 7.84 -52.49 -0.41 0.24 16 36 H 0.12 0.69 7.84 -52.49 -0.41 0.28 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.78 7.79 -51.92 -0.40 0.38 16 39 H 0.40 3.76 8.46 -40.82 -0.35 3.42 16 40 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -38.75 383.82 -9.04 -47.79 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.50 Total: 0.32 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.75 Total: -1.34 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.50 Total: -47.54 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.17 Total: -17.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.75 -9.04 -47.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704978300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.071 kcal (2) G-P(sol) polarization free energy of solvation -38.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds