Wall clock time and date at job start Tue Mar 31 2020 21:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35933 * 117.00072 * 2 1 4 4 C 1.38409 * 119.98643 * 0.23442 * 3 2 1 5 5 C 1.39551 * 119.80558 * 180.25151 * 4 3 2 6 6 C 1.47795 * 120.10864 * 179.76725 * 5 4 3 7 7 O 1.21554 * 120.00195 * 336.55634 * 6 5 4 8 8 N 1.34776 * 119.99929 * 156.55258 * 6 5 4 9 9 C 1.47435 * 125.64681 * 3.54186 * 8 6 5 10 10 C 1.54908 * 104.82894 * 204.09278 * 9 8 6 11 11 C 1.55160 * 101.58412 * 322.98884 * 10 9 8 12 12 C 1.47021 * 125.65187 * 183.49880 * 8 6 5 13 13 H 1.09001 * 109.87883 * 59.40276 * 12 8 6 14 14 C 1.53003 * 109.87873 * 298.39614 * 12 8 6 15 15 N 1.46500 * 109.47147 * 74.56775 * 14 12 8 16 16 C 1.36943 * 119.99891 * 187.36591 * 15 14 12 17 17 H 1.07997 * 119.99681 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99744 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00333 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47118 * 269.99686 * 20 18 16 22 22 H 1.48503 * 109.47086 * 29.99582 * 20 18 16 23 23 H 1.48495 * 109.47363 * 149.99564 * 20 18 16 24 24 C 1.39630 * 119.78306 * 359.49498 * 5 4 3 25 25 C 1.37924 * 119.97588 * 0.24684 * 24 5 4 26 26 C 1.38415 * 120.19319 * 0.03114 * 25 24 5 27 27 Cl 1.73603 * 119.89189 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47049 * 300.00011 * 1 2 3 30 30 H 1.08999 * 109.46808 * 60.00146 * 1 2 3 31 31 H 1.07996 * 120.10132 * 0.02562 * 4 3 2 32 32 H 1.08997 * 110.36560 * 322.92951 * 9 8 6 33 33 H 1.08999 * 110.36453 * 85.25353 * 9 8 6 34 34 H 1.09000 * 111.01068 * 81.06591 * 10 9 8 35 35 H 1.09003 * 111.00597 * 204.91849 * 10 9 8 36 36 H 1.09003 * 110.72242 * 277.14332 * 11 10 9 37 37 H 1.08994 * 110.72373 * 153.86749 * 11 10 9 38 38 H 1.08995 * 109.47110 * 314.56227 * 14 12 8 39 39 H 1.08999 * 109.47049 * 194.56420 * 14 12 8 40 40 H 0.97003 * 120.00367 * 7.36178 * 15 14 12 41 41 H 0.97004 * 120.00102 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.01360 * 180.23278 * 24 5 4 43 43 H 1.08004 * 119.90685 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2921 2.3718 0.0049 5 6 1.9296 3.6132 -0.0004 6 6 1.1309 4.8567 -0.0004 7 8 -0.0117 4.8453 -0.4150 8 7 1.6695 6.0035 0.4593 9 6 3.0594 6.1760 0.9198 10 6 3.0112 7.3911 1.8794 11 6 1.9712 8.3026 1.1760 12 6 0.9686 7.2899 0.5837 13 1 0.1110 7.1820 1.2479 14 6 0.5027 7.7640 -0.7944 15 7 -0.6530 6.9702 -1.2190 16 6 -1.1518 7.1107 -2.4866 17 1 -0.6933 7.8071 -3.1730 18 6 -2.2471 6.3589 -2.8887 19 7 -2.8061 5.5106 -2.0519 20 14 -2.9279 6.5511 -4.6176 21 1 -3.9670 7.6120 -4.6253 22 1 -1.8293 6.9274 -5.5432 23 1 -3.5287 5.2667 -5.0587 24 6 3.3244 3.6766 0.0000 25 6 4.0671 2.5144 0.0005 26 6 3.4338 1.2836 0.0000 27 17 4.3763 -0.1743 0.0000 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2136 2.3169 0.0092 32 1 3.3961 5.2859 1.4513 33 1 3.7156 6.3855 0.0751 34 1 2.6642 7.0939 2.8691 35 1 3.9832 7.8809 1.9388 36 1 2.4423 8.8863 0.3851 37 1 1.4795 8.9550 1.8975 38 1 1.3122 7.6409 -1.5137 39 1 0.2211 8.8157 -0.7407 40 1 -1.0650 6.3449 -0.6023 41 1 -3.5714 4.9849 -2.3331 42 1 3.8216 4.6354 -0.0003 43 1 5.1460 2.5647 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716785969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:39 Heat of formation + Delta-G solvation = 0.431473 kcal Electronic energy + Delta-G solvation = -27694.221323 eV Core-core repulsion = 23767.632229 eV Total energy + Delta-G solvation = -3926.589094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64090 -39.61583 -37.59328 -36.96399 -36.33841 -34.24552 -31.99605 -31.20650 -30.82681 -30.13052 -28.71619 -27.33359 -25.24542 -24.14229 -22.76648 -22.36053 -21.47444 -21.03331 -19.24790 -18.06531 -17.07957 -16.63518 -16.48654 -16.27107 -15.87364 -15.70481 -14.86609 -14.45801 -14.20149 -14.12854 -13.78513 -13.59859 -13.44887 -13.24266 -12.94329 -12.89644 -12.55965 -12.35579 -11.90017 -11.82557 -11.58865 -11.50861 -11.42436 -11.21849 -11.12120 -11.02065 -10.72704 -10.68903 -10.59973 -10.47416 -9.95281 -9.55191 -9.05385 -8.93849 -8.67041 -8.31217 -8.17757 -6.58098 -5.48067 -2.74701 0.73138 1.18900 2.03792 3.03359 3.07303 3.26112 3.54326 3.58989 3.60656 3.83417 4.48358 4.51416 4.63944 4.75921 4.84770 4.93303 4.94993 5.04003 5.15840 5.20130 5.28268 5.32292 5.40757 5.50707 5.52438 5.58758 5.72805 5.78143 5.83305 5.88879 5.95692 5.98008 6.06747 6.20594 6.23712 6.37732 6.48788 6.62206 6.82471 6.99102 7.11128 7.87000 7.91191 8.60718 8.81013 9.82753 10.48165 10.88015 11.72965 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.004183 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.164113 B = 6691.820418 C = 8852.917349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.307 6.307 3 C 0.131 3.869 4 C -0.141 4.141 5 C -0.065 4.065 6 C 0.545 3.455 7 O -0.443 6.443 8 N -0.611 5.611 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.124 4.124 12 C 0.131 3.869 13 H 0.074 0.926 14 C 0.145 3.855 15 N -0.719 5.719 16 C -0.235 4.235 17 H 0.060 0.940 18 C -0.010 4.010 19 N -0.917 5.917 20 Si 0.896 3.104 21 H -0.293 1.293 22 H -0.285 1.285 23 H -0.294 1.294 24 C -0.138 4.138 25 C -0.082 4.082 26 C -0.057 4.057 27 Cl -0.061 7.061 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.399 0.601 41 H 0.248 0.752 42 H 0.153 0.847 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.853 -5.642 11.064 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.220 6.220 3 C 0.085 3.915 4 C -0.161 4.161 5 C -0.069 4.069 6 C 0.331 3.669 7 O -0.312 6.312 8 N -0.348 5.348 9 C -0.034 4.034 10 C -0.172 4.172 11 C -0.163 4.163 12 C 0.028 3.972 13 H 0.092 0.908 14 C 0.016 3.984 15 N -0.371 5.371 16 C -0.367 4.367 17 H 0.078 0.922 18 C -0.206 4.206 19 N -0.565 5.565 20 Si 0.728 3.272 21 H -0.221 1.221 22 H -0.211 1.211 23 H -0.220 1.220 24 C -0.156 4.156 25 C -0.101 4.101 26 C -0.084 4.084 27 Cl -0.032 7.032 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.241 0.759 41 H 0.058 0.942 42 H 0.170 0.830 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.248 -6.061 10.641 20.346 hybrid contribution -0.592 -0.113 -0.990 1.159 sum 15.656 -6.174 9.651 19.400 Atomic orbital electron populations 1.23197 0.77361 1.04259 1.02471 1.86126 1.22078 1.25419 1.88330 1.18531 0.90358 0.85262 0.97381 1.21373 1.01458 0.90043 1.03221 1.19960 0.93557 0.93647 0.99703 1.17903 0.87435 0.82011 0.79587 1.91022 1.16210 1.83153 1.40800 1.48288 1.11750 1.09255 1.65525 1.22700 0.84699 0.98826 0.97187 1.22804 0.99861 0.95854 0.98689 1.22637 0.96404 0.97153 1.00079 1.21912 0.94620 0.81985 0.98667 0.90754 1.20985 0.91552 0.94481 0.91418 1.42857 1.32249 1.47901 1.14054 1.19139 1.09171 1.18110 0.90274 0.92160 1.24644 0.99204 0.99448 0.97306 1.69742 1.24413 1.28319 1.34044 0.86363 0.78834 0.76663 0.85367 1.22051 1.21137 1.22038 1.21911 0.92960 0.99360 1.01392 1.20823 1.00500 0.89474 0.99310 1.20337 0.88699 0.88737 1.10672 1.98355 1.71783 1.36067 1.97023 0.87890 0.92146 0.91673 0.83037 0.89944 0.91323 0.90678 0.90064 0.90322 0.90130 0.96364 0.96515 0.75892 0.94219 0.82971 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.13 9.94 -19.53 -0.19 -4.32 16 3 C 0.13 1.86 6.67 -39.25 -0.26 1.60 16 4 C -0.14 -2.20 8.57 -39.03 -0.33 -2.54 16 5 C -0.07 -1.02 5.76 -104.98 -0.61 -1.63 16 6 C 0.54 10.36 7.50 -12.35 -0.09 10.27 16 7 O -0.44 -10.90 12.69 5.32 0.07 -10.83 16 8 N -0.61 -9.67 3.07 -164.13 -0.50 -10.17 16 9 C 0.09 0.94 5.00 -2.52 -0.01 0.93 16 10 C -0.13 -1.18 7.08 -24.58 -0.17 -1.35 16 11 C -0.12 -1.39 6.45 -24.90 -0.16 -1.55 16 12 C 0.13 2.17 3.09 -66.95 -0.21 1.96 16 13 H 0.07 1.35 8.12 -51.93 -0.42 0.92 16 14 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 15 N -0.72 -19.61 4.13 -59.91 -0.25 -19.86 16 16 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 17 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.92 -29.35 13.06 55.49 0.72 -28.63 16 20 Si 0.90 23.68 29.55 -169.99 -5.02 18.66 16 21 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 24 C -0.14 -1.67 7.99 -39.18 -0.31 -1.99 16 25 C -0.08 -0.91 9.80 -39.63 -0.39 -1.30 16 26 C -0.06 -0.73 6.34 -39.25 -0.25 -0.98 16 27 Cl -0.06 -0.72 28.49 -51.86 -1.48 -2.20 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 30 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 31 H 0.15 2.49 6.06 -52.49 -0.32 2.17 16 32 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 33 H 0.07 0.66 7.38 -51.93 -0.38 0.27 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 40 H 0.40 11.61 4.99 -40.82 -0.20 11.40 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.15 1.51 4.17 -52.49 -0.22 1.29 16 43 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -36.57 360.25 -8.86 -45.43 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.56 Total: 6.39 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.08 Total: 0.10 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.03 Total: -58.66 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.13 Total: -15.15 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.57 -8.86 -45.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716785969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.859 kcal (2) G-P(sol) polarization free energy of solvation -36.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds