Wall clock time and date at job start Tue Mar 31 2020 21:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35933 * 117.00072 * 2 1 4 4 C 1.38409 * 119.98643 * 0.23442 * 3 2 1 5 5 C 1.39551 * 119.80558 * 180.25151 * 4 3 2 6 6 C 1.47795 * 120.10864 * 179.76725 * 5 4 3 7 7 O 1.21554 * 120.00195 * 336.55634 * 6 5 4 8 8 N 1.34776 * 119.99929 * 156.55258 * 6 5 4 9 9 C 1.47435 * 125.64681 * 3.54186 * 8 6 5 10 10 C 1.54908 * 104.82894 * 204.09278 * 9 8 6 11 11 C 1.55160 * 101.58412 * 322.98884 * 10 9 8 12 12 C 1.47021 * 125.65187 * 183.49880 * 8 6 5 13 13 H 1.09001 * 109.87883 * 59.40276 * 12 8 6 14 14 C 1.53003 * 109.87873 * 298.39614 * 12 8 6 15 15 N 1.46500 * 109.47147 * 74.56775 * 14 12 8 16 16 C 1.36943 * 119.99891 * 187.36591 * 15 14 12 17 17 H 1.07997 * 119.99681 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99744 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00333 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47118 * 269.99686 * 20 18 16 22 22 H 1.48503 * 109.47086 * 29.99582 * 20 18 16 23 23 H 1.48495 * 109.47363 * 149.99564 * 20 18 16 24 24 C 1.39630 * 119.78306 * 359.49498 * 5 4 3 25 25 C 1.37924 * 119.97588 * 0.24684 * 24 5 4 26 26 C 1.38415 * 120.19319 * 0.03114 * 25 24 5 27 27 Cl 1.73603 * 119.89189 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47049 * 300.00011 * 1 2 3 30 30 H 1.08999 * 109.46808 * 60.00146 * 1 2 3 31 31 H 1.07996 * 120.10132 * 0.02562 * 4 3 2 32 32 H 1.08997 * 110.36560 * 322.92951 * 9 8 6 33 33 H 1.08999 * 110.36453 * 85.25353 * 9 8 6 34 34 H 1.09000 * 111.01068 * 81.06591 * 10 9 8 35 35 H 1.09003 * 111.00597 * 204.91849 * 10 9 8 36 36 H 1.09003 * 110.72242 * 277.14332 * 11 10 9 37 37 H 1.08994 * 110.72373 * 153.86749 * 11 10 9 38 38 H 1.08995 * 109.47110 * 314.56227 * 14 12 8 39 39 H 1.08999 * 109.47049 * 194.56420 * 14 12 8 40 40 H 0.97003 * 120.00367 * 7.36178 * 15 14 12 41 41 H 0.97004 * 120.00102 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.01360 * 180.23278 * 24 5 4 43 43 H 1.08004 * 119.90685 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2921 2.3718 0.0049 5 6 1.9296 3.6132 -0.0004 6 6 1.1309 4.8567 -0.0004 7 8 -0.0117 4.8453 -0.4150 8 7 1.6695 6.0035 0.4593 9 6 3.0594 6.1760 0.9198 10 6 3.0112 7.3911 1.8794 11 6 1.9712 8.3026 1.1760 12 6 0.9686 7.2899 0.5837 13 1 0.1110 7.1820 1.2479 14 6 0.5027 7.7640 -0.7944 15 7 -0.6530 6.9702 -1.2190 16 6 -1.1518 7.1107 -2.4866 17 1 -0.6933 7.8071 -3.1730 18 6 -2.2471 6.3589 -2.8887 19 7 -2.8061 5.5106 -2.0519 20 14 -2.9279 6.5511 -4.6176 21 1 -3.9670 7.6120 -4.6253 22 1 -1.8293 6.9274 -5.5432 23 1 -3.5287 5.2667 -5.0587 24 6 3.3244 3.6766 0.0000 25 6 4.0671 2.5144 0.0005 26 6 3.4338 1.2836 0.0000 27 17 4.3763 -0.1743 0.0000 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2136 2.3169 0.0092 32 1 3.3961 5.2859 1.4513 33 1 3.7156 6.3855 0.0751 34 1 2.6642 7.0939 2.8691 35 1 3.9832 7.8809 1.9388 36 1 2.4423 8.8863 0.3851 37 1 1.4795 8.9550 1.8975 38 1 1.3122 7.6409 -1.5137 39 1 0.2211 8.8157 -0.7407 40 1 -1.0650 6.3449 -0.6023 41 1 -3.5714 4.9849 -2.3331 42 1 3.8216 4.6354 -0.0003 43 1 5.1460 2.5647 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716785969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:38 Heat of formation + Delta-G solvation = -24.318623 kcal Electronic energy + Delta-G solvation = -27695.294568 eV Core-core repulsion = 23767.632229 eV Total energy + Delta-G solvation = -3927.662339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79126 -40.76004 -38.67611 -38.20164 -37.39038 -36.18395 -33.53314 -32.77160 -31.88693 -31.27783 -30.20498 -28.33065 -26.79563 -25.56598 -24.30754 -23.44241 -22.85449 -22.00735 -20.50878 -19.44905 -18.80780 -17.88848 -17.58469 -17.38508 -16.96476 -16.87908 -16.63179 -16.04993 -15.35097 -15.23837 -15.18497 -14.98096 -14.74893 -14.58671 -14.24229 -14.14683 -13.72997 -13.52103 -13.21959 -13.09013 -12.93078 -12.87351 -12.67957 -12.57255 -12.47764 -12.26876 -12.21206 -11.99762 -11.94288 -11.59606 -11.58001 -11.46700 -10.89000 -10.59785 -10.05110 -9.52011 -9.35438 -8.77009 -7.80013 -5.06691 -0.38233 0.16804 1.04252 1.40697 1.44239 1.51703 1.82678 1.97676 2.15453 2.58767 2.63041 3.42361 3.48168 3.58717 3.69820 3.78641 3.88336 3.99335 4.07889 4.23534 4.25045 4.28311 4.31532 4.42097 4.46800 4.59195 4.63459 4.65293 4.80239 4.82680 4.88736 4.92057 4.97875 5.04776 5.16255 5.18612 5.21610 5.41668 5.43767 5.49146 5.62656 6.06585 6.37212 6.63965 7.30928 7.51648 8.35615 8.62722 9.41790 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.004183 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.164113 B = 6691.820418 C = 8852.917349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.160 4.160 5 C -0.087 4.087 6 C 0.535 3.465 7 O -0.517 6.517 8 N -0.609 5.609 9 C 0.076 3.924 10 C -0.119 4.119 11 C -0.114 4.114 12 C 0.131 3.869 13 H 0.048 0.952 14 C 0.142 3.858 15 N -0.734 5.734 16 C -0.244 4.244 17 H 0.063 0.937 18 C -0.074 4.074 19 N -0.953 5.953 20 Si 0.965 3.035 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.298 1.298 24 C -0.123 4.123 25 C -0.065 4.065 26 C -0.060 4.060 27 Cl -0.048 7.048 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.012 0.988 39 H 0.024 0.976 40 H 0.388 0.612 41 H 0.242 0.758 42 H 0.182 0.818 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.797 -4.902 11.643 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.227 6.227 3 C 0.075 3.925 4 C -0.180 4.180 5 C -0.090 4.090 6 C 0.323 3.677 7 O -0.392 6.392 8 N -0.344 5.344 9 C -0.045 4.045 10 C -0.156 4.156 11 C -0.153 4.153 12 C 0.027 3.973 13 H 0.066 0.934 14 C 0.014 3.986 15 N -0.384 5.384 16 C -0.376 4.376 17 H 0.081 0.919 18 C -0.267 4.267 19 N -0.603 5.603 20 Si 0.794 3.206 21 H -0.212 1.212 22 H -0.199 1.199 23 H -0.225 1.225 24 C -0.141 4.141 25 C -0.084 4.084 26 C -0.088 4.088 27 Cl -0.019 7.019 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.030 0.970 39 H 0.042 0.958 40 H 0.228 0.772 41 H 0.051 0.949 42 H 0.198 0.802 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 20.282 -5.268 11.249 23.784 hybrid contribution -1.720 -0.345 -1.119 2.080 sum 18.563 -5.613 10.131 21.879 Atomic orbital electron populations 1.23326 0.76486 1.05885 1.01680 1.86105 1.23008 1.25228 1.88344 1.18648 0.91163 0.84851 0.97831 1.21232 1.00604 0.91157 1.05014 1.19846 0.95045 0.91954 1.02176 1.18535 0.86946 0.83645 0.78584 1.90976 1.19325 1.84435 1.44457 1.48414 1.13953 1.08004 1.64014 1.23143 0.81707 1.00930 0.98672 1.22832 1.00815 0.94104 0.97881 1.22638 0.95688 0.96247 1.00701 1.21891 0.95901 0.84008 0.95491 0.93407 1.21195 0.89419 0.94030 0.93982 1.43110 1.33885 1.48339 1.13093 1.19556 1.09016 1.17498 0.91552 0.91905 1.25484 1.00049 0.99712 1.01437 1.69956 1.24843 1.29534 1.36004 0.85271 0.78269 0.76331 0.80680 1.21186 1.19894 1.22500 1.22172 0.91063 1.01172 0.99670 1.21266 1.02324 0.87978 0.96790 1.20613 0.88248 0.90049 1.09864 1.98362 1.71096 1.35554 1.96900 0.84919 0.92152 0.93400 0.85582 0.87893 0.89237 0.90140 0.86133 0.89275 0.88577 0.96964 0.95827 0.77213 0.94926 0.80156 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.31 -8.60 9.94 -92.80 -0.92 -9.53 16 3 C 0.12 3.49 6.67 22.48 0.15 3.64 16 4 C -0.16 -5.32 8.57 22.63 0.19 -5.12 16 5 C -0.09 -2.78 5.76 -20.10 -0.12 -2.89 16 6 C 0.53 21.30 7.50 86.77 0.65 21.95 16 7 O -0.52 -27.60 12.69 -3.89 -0.05 -27.64 16 8 N -0.61 -19.06 3.07 -791.47 -2.43 -21.48 16 9 C 0.08 1.34 5.00 86.85 0.43 1.77 16 10 C -0.12 -1.54 7.08 31.99 0.23 -1.31 16 11 C -0.11 -2.23 6.45 31.78 0.21 -2.03 16 12 C 0.13 4.33 3.09 45.34 0.14 4.47 16 13 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 14 C 0.14 6.13 5.62 86.38 0.49 6.62 16 15 N -0.73 -42.00 4.13 -343.45 -1.42 -43.41 16 16 C -0.24 -15.14 9.99 84.03 0.84 -14.30 16 17 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 18 C -0.07 -4.69 5.50 84.86 0.47 -4.22 16 19 N -0.95 -64.22 13.06 21.65 0.28 -63.94 16 20 Si 0.96 50.27 29.55 68.60 2.03 52.30 16 21 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.30 -15.60 7.11 99.48 0.71 -14.90 16 24 C -0.12 -2.66 7.99 22.53 0.18 -2.48 16 25 C -0.07 -1.21 9.80 22.24 0.22 -1.00 16 26 C -0.06 -1.43 6.34 22.48 0.14 -1.28 16 27 Cl -0.05 -1.02 28.49 -2.72 -0.08 -1.10 16 28 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 1.39 7.65 -2.39 -0.02 1.37 16 30 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 31 H 0.13 4.73 6.06 -2.91 -0.02 4.71 16 32 H 0.10 1.43 5.93 -2.39 -0.01 1.42 16 33 H 0.09 1.27 7.38 -2.39 -0.02 1.25 16 34 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.02 1.00 8.10 -2.39 -0.02 0.98 16 40 H 0.39 24.11 4.99 -92.71 -0.46 23.65 16 41 H 0.24 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.18 2.80 4.17 -2.91 -0.01 2.79 16 43 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -86.60 360.25 3.33 -83.27 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.59 Total: 26.12 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.33 Total: 5.42 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -3.56 Total: -128.84 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.97 Total: -37.17 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.03 Total: 52.30 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -86.60 3.33 -83.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716785969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.951 kcal (2) G-P(sol) polarization free energy of solvation -86.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds