Wall clock time and date at job start Tue Mar 31 2020 21:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35716 * 116.99778 * 2 1 4 4 C 1.39056 * 119.90189 * 0.02562 * 3 2 1 5 5 C 1.37640 * 120.12780 * 179.71678 * 4 3 2 6 6 C 1.39781 * 119.92155 * 0.51861 * 5 4 3 7 7 C 1.47535 * 120.09732 * 179.76583 * 6 5 4 8 8 O 1.21588 * 119.99761 * 153.22333 * 7 6 5 9 9 N 1.34772 * 119.99788 * 333.22277 * 7 6 5 10 10 C 1.47419 * 125.65155 * 4.90286 * 9 7 6 11 11 C 1.54915 * 104.83493 * 204.14989 * 10 9 7 12 12 C 1.55158 * 101.57963 * 322.99623 * 11 10 9 13 13 C 1.47028 * 125.64483 * 184.93560 * 9 7 6 14 14 H 1.08995 * 110.01435 * 59.42297 * 13 9 7 15 15 C 1.53005 * 109.88008 * 298.33284 * 13 9 7 16 16 N 1.46500 * 109.46822 * 73.88661 * 15 13 9 17 17 C 1.36940 * 119.99848 * 187.19216 * 16 15 13 18 18 H 1.07998 * 119.99707 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99981 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99900 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47059 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47289 * 299.99995 * 21 19 17 24 24 H 1.48503 * 109.47354 * 59.99946 * 21 19 17 25 25 C 1.39853 * 119.80142 * 359.48349 * 6 5 4 26 26 Cl 1.73599 * 120.06184 * 180.28438 * 25 6 5 27 27 C 1.37895 * 119.87293 * 0.25233 * 25 6 5 28 28 H 1.08998 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47251 * 299.99776 * 1 2 3 30 30 H 1.08997 * 109.47410 * 59.99884 * 1 2 3 31 31 H 1.08005 * 119.93736 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.03998 * 180.25378 * 5 4 3 33 33 H 1.09008 * 110.36234 * 85.31331 * 10 9 7 34 34 H 1.08997 * 110.46569 * 323.04092 * 10 9 7 35 35 H 1.09000 * 111.00620 * 204.91999 * 11 10 9 36 36 H 1.08998 * 110.99732 * 81.06670 * 11 10 9 37 37 H 1.09004 * 110.71802 * 277.13653 * 12 11 10 38 38 H 1.09000 * 110.71710 * 153.86366 * 12 11 10 39 39 H 1.09003 * 109.46963 * 313.89011 * 15 13 9 40 40 H 1.08993 * 109.47142 * 193.88900 * 15 13 9 41 41 H 0.96996 * 120.00478 * 7.20594 * 16 15 13 42 42 H 0.96994 * 119.99964 * 0.02562 * 20 19 17 43 43 H 1.07996 * 119.96225 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2857 2.3742 0.0005 5 6 1.9057 3.6030 0.0064 6 6 3.3013 3.6799 0.0009 7 6 3.9699 4.9950 0.0020 8 8 5.0853 5.1096 0.4721 9 7 3.3442 6.0694 -0.5182 10 6 1.9602 6.0958 -1.0251 11 6 1.9287 7.2731 -2.0315 12 6 2.8585 8.3022 -1.3361 13 6 3.9292 7.4092 -0.6747 14 1 4.8135 7.3583 -1.3099 15 6 4.3053 7.9760 0.6958 16 7 5.5046 7.2969 1.1927 17 6 5.9462 7.5323 2.4674 18 1 5.4101 8.2183 3.1065 19 6 7.0829 6.8893 2.9379 20 7 7.7364 6.0538 2.1588 21 14 7.6848 7.2099 4.6770 22 1 8.9073 6.4068 4.9336 23 1 7.9979 8.6530 4.8343 24 1 6.6275 6.8244 5.6458 25 6 4.0621 2.5063 0.0004 26 17 5.7959 2.5939 0.0010 27 6 3.4323 1.2796 0.0000 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2073 2.3146 0.0005 32 1 1.3144 4.5069 0.0110 33 1 1.2606 6.2758 -0.2087 34 1 1.7210 5.1594 -1.5291 35 1 0.9188 7.6688 -2.1386 36 1 2.3331 6.9717 -2.9978 37 1 2.3110 8.8696 -0.5834 38 1 3.3120 8.9693 -2.0692 39 1 3.4826 7.8170 1.3930 40 1 4.5036 9.0439 0.6054 41 1 5.9860 6.6807 0.6187 42 1 7.4241 5.8876 1.2557 43 1 4.0184 0.3725 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716786239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:41 Heat of formation + Delta-G solvation = -22.336589 kcal Electronic energy + Delta-G solvation = -27918.884136 eV Core-core repulsion = 23991.307744 eV Total energy + Delta-G solvation = -3927.576392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75884 -40.80759 -38.89650 -37.97727 -37.28935 -36.43697 -33.58618 -32.78893 -31.98844 -31.09450 -30.07014 -28.27556 -26.55264 -25.21670 -24.33204 -23.90339 -22.82311 -21.98829 -20.39960 -19.28704 -19.15285 -18.34753 -17.63834 -17.42276 -16.94633 -16.76165 -16.10087 -15.76515 -15.57976 -15.39946 -15.25681 -15.09972 -14.77342 -14.70930 -14.21182 -14.05765 -13.92058 -13.71781 -13.30908 -13.07764 -12.87592 -12.76521 -12.54616 -12.51018 -12.23418 -12.16503 -12.09326 -11.88375 -11.83434 -11.62261 -11.58264 -11.10315 -10.83340 -10.43217 -10.02151 -9.59034 -9.35747 -8.80556 -8.21641 -5.08899 -0.25750 0.01947 1.04689 1.51467 1.64826 1.80864 1.87530 2.00219 2.29231 2.59381 2.77321 3.46741 3.48300 3.56212 3.68634 3.75876 3.87198 3.96593 3.99442 4.17491 4.23540 4.33062 4.34738 4.41194 4.44316 4.54375 4.60070 4.74574 4.75148 4.79269 4.84170 4.86984 4.97943 5.01750 5.05052 5.11670 5.14996 5.29818 5.37294 5.56095 5.65218 6.23549 6.62745 6.72997 7.23080 7.54382 8.33623 8.46061 9.32125 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.004535 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.710844 B = 6172.352626 C = 7892.172466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.165 3.835 4 C -0.198 4.198 5 C -0.042 4.042 6 C -0.176 4.176 7 C 0.539 3.461 8 O -0.510 6.510 9 N -0.613 5.613 10 C 0.080 3.920 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.132 3.868 14 H 0.045 0.955 15 C 0.151 3.849 16 N -0.745 5.745 17 C -0.337 4.337 18 H 0.050 0.950 19 C -0.104 4.104 20 N -0.968 5.968 21 Si 1.126 2.874 22 H -0.293 1.293 23 H -0.276 1.276 24 H -0.285 1.285 25 C 0.028 3.972 26 Cl -0.054 7.054 27 C -0.167 4.167 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.008 0.992 40 H 0.018 0.982 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.134 -7.936 -12.001 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.118 3.882 4 C -0.216 4.216 5 C -0.061 4.061 6 C -0.180 4.180 7 C 0.327 3.673 8 O -0.384 6.384 9 N -0.348 5.348 10 C -0.041 4.041 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.028 3.972 14 H 0.063 0.937 15 C 0.022 3.978 16 N -0.397 5.397 17 C -0.469 4.469 18 H 0.068 0.932 19 C -0.296 4.296 20 N -0.616 5.616 21 Si 0.951 3.049 22 H -0.219 1.219 23 H -0.202 1.202 24 H -0.212 1.212 25 C 0.000 4.000 26 Cl -0.025 7.025 27 C -0.187 4.187 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.200 0.800 32 H 0.193 0.807 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.026 0.974 40 H 0.036 0.964 41 H 0.217 0.783 42 H 0.061 0.939 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.205 -8.383 -10.486 26.809 hybrid contribution -0.220 0.254 -0.948 1.006 sum -23.425 -8.129 -11.434 27.305 Atomic orbital electron populations 1.23548 0.75229 1.06263 1.03196 1.86056 1.24454 1.25701 1.87416 1.19014 0.90923 0.85729 0.92510 1.21630 1.02376 0.90210 1.07423 1.21901 0.91073 1.00349 0.92731 1.19718 0.95216 0.91451 1.11622 1.18332 0.86088 0.84144 0.78745 1.90894 1.20437 1.83731 1.43370 1.48404 1.15630 1.08525 1.62275 1.23039 0.81844 1.01433 0.97784 1.22819 1.01742 0.93432 0.97494 1.22627 0.95395 0.97118 1.00111 1.21842 0.97232 0.82949 0.95137 0.93727 1.21063 0.88752 0.94416 0.93521 1.43110 1.29945 1.53038 1.13625 1.20273 1.10368 1.23589 0.92634 0.93232 1.27045 0.96020 0.97573 1.09005 1.70792 1.42625 1.38602 1.09580 0.82687 0.75367 0.75969 0.70843 1.21943 1.20226 1.21213 1.20872 0.85661 0.93963 0.99519 1.98458 1.09226 1.98605 1.96179 1.20214 0.93180 0.96416 1.08846 0.86026 0.91024 0.90348 0.80004 0.80741 0.89577 0.88303 0.86059 0.90164 0.89416 0.88638 0.97397 0.96438 0.78314 0.93938 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.71 10.48 -90.38 -0.95 -6.66 16 3 C 0.17 3.54 6.69 22.63 0.15 3.69 16 4 C -0.20 -3.35 9.01 22.32 0.20 -3.15 16 5 C -0.04 -0.93 7.92 22.50 0.18 -0.76 16 6 C -0.18 -5.87 5.73 -20.06 -0.11 -5.98 16 7 C 0.54 22.21 7.32 86.70 0.63 22.85 16 8 O -0.51 -27.33 10.27 -3.99 -0.04 -27.37 16 9 N -0.61 -20.11 3.06 -791.77 -2.43 -22.54 16 10 C 0.08 1.49 5.02 86.86 0.44 1.93 16 11 C -0.12 -1.64 7.09 31.99 0.23 -1.41 16 12 C -0.11 -2.39 6.45 31.78 0.21 -2.19 16 13 C 0.13 4.60 3.10 45.34 0.14 4.74 16 14 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.15 6.86 5.62 86.38 0.49 7.35 16 16 N -0.74 -44.03 4.10 -343.45 -1.41 -45.44 16 17 C -0.34 -21.78 9.99 84.03 0.84 -20.95 16 18 H 0.05 3.13 7.83 -2.91 -0.02 3.11 16 19 C -0.10 -6.85 5.50 84.86 0.47 -6.38 16 20 N -0.97 -68.77 13.70 21.65 0.30 -68.47 16 21 Si 1.13 58.83 29.92 68.60 2.05 60.88 16 22 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 C 0.03 0.97 6.33 22.58 0.14 1.11 16 26 Cl -0.05 -2.28 26.39 -2.72 -0.07 -2.35 16 27 C -0.17 -4.65 9.75 22.35 0.22 -4.43 16 28 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 30 H 0.08 0.30 7.65 -2.39 -0.02 0.28 16 31 H 0.18 1.39 6.27 -2.91 -0.02 1.38 16 32 H 0.18 2.83 4.47 -2.91 -0.01 2.81 16 33 H 0.09 1.32 7.36 -2.38 -0.02 1.30 16 34 H 0.10 1.48 6.02 -2.39 -0.01 1.46 16 35 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.71 7.85 -2.38 -0.02 1.69 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.02 0.80 8.11 -2.39 -0.02 0.78 16 41 H 0.38 23.71 3.82 -92.74 -0.35 23.36 16 42 H 0.25 18.24 6.44 -92.71 -0.60 17.65 16 43 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -94.44 354.95 3.65 -90.80 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.87 Total: 23.52 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.32 Total: -2.37 kcal Atomic # 7 Polarization: -132.91 SS G_CDS: -3.54 Total: -136.45 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.99 Total: -34.03 kcal Atomic # 14 Polarization: 58.83 SS G_CDS: 2.05 Total: 60.88 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.07 Total: -2.35 kcal Total: -94.44 3.65 -90.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716786239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.460 kcal (2) G-P(sol) polarization free energy of solvation -94.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds