Wall clock time and date at job start Tue Mar 31 2020 20:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.35846 * 126.13589 * 2 1 4 4 N 1.30172 * 108.99982 * 179.78095 * 3 2 1 5 5 C 1.35754 * 108.86842 * 0.38081 * 4 3 2 6 6 C 1.47325 * 126.23370 * 179.88371 * 5 4 3 7 7 O 1.21626 * 119.99612 * 179.68817 * 6 5 4 8 8 N 1.34768 * 120.00365 * 359.68815 * 6 5 4 9 9 C 1.47024 * 125.64622 * 359.96051 * 8 6 5 10 10 C 1.54364 * 107.28778 * 181.12815 * 9 8 6 11 11 C 1.55150 * 102.92467 * 22.13781 * 10 9 8 12 12 H 1.08998 * 111.00640 * 82.64069 * 11 10 9 13 13 N 1.46500 * 111.00730 * 206.45445 * 11 10 9 14 14 C 1.34779 * 120.00169 * 201.81530 * 13 11 10 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99618 * 22 20 18 24 24 H 1.48498 * 109.47311 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46831 * 299.99623 * 22 20 18 26 26 C 1.47419 * 125.65351 * 180.02562 * 8 6 5 27 27 C 1.35375 * 126.13112 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47178 * 269.97867 * 1 2 3 29 29 H 1.09002 * 109.46600 * 29.97966 * 1 2 3 30 30 H 1.08997 * 109.46988 * 149.97480 * 1 2 3 31 31 H 1.08002 * 125.49362 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.88050 * 300.51108 * 9 8 6 33 33 H 1.09002 * 109.88732 * 61.67586 * 9 8 6 34 34 H 1.09002 * 110.70704 * 263.78754 * 10 9 8 35 35 H 1.09000 * 110.75869 * 140.50384 * 10 9 8 36 36 H 0.96996 * 119.99986 * 21.82127 * 13 11 10 37 37 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 38 38 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 39 39 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 40 40 H 1.09005 * 110.36922 * 36.99681 * 26 8 6 41 41 H 1.09001 * 110.46118 * 274.72309 * 26 8 6 42 42 H 1.07998 * 126.56732 * 359.96303 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2662 1.0971 0.0000 4 7 3.5101 0.7136 0.0047 5 6 3.5512 -0.6433 -0.0006 6 6 4.7653 -1.4778 -0.0004 7 8 4.6698 -2.6903 0.0002 8 7 5.9818 -0.8977 -0.0007 9 6 6.2409 0.5495 -0.0022 10 6 7.7723 0.7414 -0.0311 11 6 8.2796 -0.6040 -0.6140 12 1 8.2193 -0.6058 -1.7023 13 7 9.6451 -0.8888 -0.1660 14 6 10.4220 -1.7363 -0.8693 15 8 9.9909 -2.2628 -1.8732 16 6 11.8264 -2.0297 -0.4082 17 16 12.6066 -3.1939 -1.5537 18 6 14.1891 -3.3550 -0.7955 19 1 14.4128 -2.8083 0.1086 20 6 15.1483 -4.1837 -1.3609 21 7 14.8757 -4.8496 -2.4631 22 14 16.8256 -4.3551 -0.5567 23 1 16.6622 -4.8835 0.8214 24 1 17.6618 -5.2911 -1.3504 25 1 17.4865 -3.0264 -0.5023 26 6 7.2730 -1.6090 -0.0010 27 6 2.2633 -1.0934 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9258 2.1221 0.0004 32 1 5.7941 1.0052 -0.8859 33 1 5.8273 1.0012 0.8995 34 1 8.1604 0.8963 0.9757 35 1 8.0455 1.5713 -0.6827 36 1 9.9900 -0.4675 0.6367 37 1 11.7974 -2.4662 0.5902 38 1 12.4016 -1.1042 -0.3836 39 1 15.5459 -5.4291 -2.8580 40 1 7.2113 -2.5070 -0.6159 41 1 7.5664 -1.8665 1.0167 42 1 1.9421 -2.1245 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720338979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:38 Heat of formation + Delta-G solvation = 2.614910 kcal Electronic energy + Delta-G solvation = -25537.314483 eV Core-core repulsion = 21645.156527 eV Total energy + Delta-G solvation = -3892.157956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.57416 -40.11340 -38.94714 -37.26562 -34.67458 -33.96905 -32.39758 -31.07931 -30.19412 -29.47602 -28.38614 -27.27248 -25.45666 -24.40989 -22.35722 -21.73080 -21.22181 -20.35921 -19.58153 -18.04116 -17.66272 -16.85084 -16.65857 -16.34875 -16.00420 -15.64053 -15.02334 -14.95495 -14.77198 -14.55017 -14.28876 -14.14400 -13.81122 -13.53264 -13.42913 -13.38465 -13.12001 -12.86470 -12.75249 -12.51738 -12.04369 -11.90321 -11.49127 -11.02243 -11.01175 -10.96075 -10.74391 -10.61012 -10.22376 -10.16926 -9.79514 -9.40594 -9.10313 -9.03851 -8.97194 -8.61332 -8.20466 -6.46540 -6.18211 -3.88843 1.25369 2.06219 2.14095 2.76195 3.07531 3.14269 3.26184 3.30425 3.33864 3.36679 3.74224 3.99255 4.08174 4.23493 4.32659 4.34378 4.46329 4.52711 4.74086 4.79677 4.86972 5.03829 5.10864 5.16748 5.19982 5.26678 5.56519 5.57449 5.65010 5.67309 5.81820 5.89437 5.92230 5.98925 6.02671 6.16588 6.20073 6.54221 6.64033 7.31320 7.45442 7.62315 7.70059 8.10372 8.38159 8.61441 9.26828 10.89134 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.001769 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.837910 B =15828.277699 C =16206.906016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.461 5.461 3 C 0.182 3.818 4 N -0.459 5.459 5 C -0.057 4.057 6 C 0.616 3.384 7 O -0.542 6.542 8 N -0.605 5.605 9 C 0.121 3.879 10 C -0.142 4.142 11 C 0.137 3.863 12 H 0.105 0.895 13 N -0.728 5.728 14 C 0.533 3.467 15 O -0.513 6.513 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.095 3.905 27 C 0.034 3.966 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.736 16.967 8.413 35.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.101 4.101 4 N -0.178 5.178 5 C -0.186 4.186 6 C 0.405 3.595 7 O -0.419 6.419 8 N -0.338 5.338 9 C -0.002 4.002 10 C -0.181 4.181 11 C 0.030 3.970 12 H 0.123 0.877 13 N -0.383 5.383 14 C 0.319 3.681 15 O -0.386 6.386 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.029 4.029 27 C -0.105 4.105 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -29.936 15.784 6.584 34.477 hybrid contribution 0.902 0.332 2.123 2.331 sum -29.034 16.116 8.707 34.330 Atomic orbital electron populations 1.22165 0.75720 1.05256 1.04112 1.45362 1.08306 1.06925 1.53734 1.25252 0.85262 0.93604 1.06012 1.70709 1.19188 1.10326 1.17610 1.20451 0.92889 0.90517 1.14701 1.16507 0.80781 0.85980 0.76259 1.90832 1.86179 1.13280 1.51643 1.48056 1.04972 1.08151 1.72604 1.21980 0.94230 0.80714 1.03323 1.23024 0.94995 0.97620 1.02412 1.21947 0.81356 0.93155 1.00538 0.87672 1.45889 1.13108 1.48871 1.30404 1.20381 0.86902 0.77639 0.83154 1.90721 1.74154 1.49025 1.24713 1.23532 0.94889 1.05923 1.06055 1.85426 1.12062 1.53338 1.32426 1.22832 0.99004 1.32611 1.14035 0.90960 1.24985 0.98946 0.94702 0.94909 1.70005 1.34945 1.26810 1.18509 0.86228 0.81944 0.78163 0.79174 1.19947 1.20829 1.19960 1.22678 0.81690 0.96779 1.01740 1.22610 0.90143 0.93280 1.04465 0.90025 0.88943 0.89185 0.77202 0.90396 0.90524 0.90031 0.89174 0.76488 0.89107 0.89120 0.92134 0.89445 0.90976 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.06 11.15 59.85 0.67 0.73 16 2 N -0.46 -2.50 3.13 -125.77 -0.39 -2.89 16 3 C 0.18 1.11 12.55 -89.91 -1.13 -0.02 16 4 N -0.46 -4.45 8.77 -11.03 -0.10 -4.54 16 5 C -0.06 -0.65 6.82 -83.09 -0.57 -1.21 16 6 C 0.62 8.85 7.84 -12.57 -0.10 8.75 16 7 O -0.54 -9.48 17.14 5.25 0.09 -9.39 16 8 N -0.60 -7.80 3.33 -171.81 -0.57 -8.37 16 9 C 0.12 1.18 5.52 -3.04 -0.02 1.16 16 10 C -0.14 -1.21 6.59 -24.88 -0.16 -1.37 16 11 C 0.14 1.68 3.37 -65.80 -0.22 1.46 16 12 H 0.11 1.51 7.63 -51.93 -0.40 1.11 16 13 N -0.73 -9.60 5.21 -51.74 -0.27 -9.87 16 14 C 0.53 9.93 7.85 -10.99 -0.09 9.85 16 15 O -0.51 -11.76 15.55 5.56 0.09 -11.68 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.09 1.30 6.60 -2.54 -0.02 1.28 16 27 C 0.03 0.29 11.26 -16.64 -0.19 0.10 16 28 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.21 0.41 8.06 -52.49 -0.42 -0.02 16 32 H 0.08 0.77 7.63 -51.93 -0.40 0.38 16 33 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 34 H 0.08 0.57 8.00 -51.93 -0.42 0.16 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.40 3.97 8.54 -40.82 -0.35 3.62 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -39.79 375.29 -9.12 -48.91 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.72 Total: 0.35 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.40 Total: 4.79 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.60 Total: -51.37 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.18 Total: -21.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.79 -9.12 -48.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720338979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.525 kcal (2) G-P(sol) polarization free energy of solvation -39.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds