Wall clock time and date at job start Tue Mar 31 2020 20:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99635 * 2 1 4 4 C 1.52999 * 109.47105 * 269.99795 * 3 2 1 5 5 C 1.53001 * 109.47422 * 180.02562 * 4 3 2 6 6 N 1.46491 * 109.47441 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00368 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99730 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00249 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47146 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00342 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99363 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00187 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00065 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99792 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47132 * 120.00518 * 15 13 11 18 18 H 1.48501 * 109.46805 * 240.00158 * 15 13 11 19 19 C 1.34771 * 120.00215 * 179.97438 * 2 1 3 20 20 O 1.21519 * 120.00039 * 182.19742 * 19 2 1 21 21 C 1.48149 * 120.00260 * 2.20176 * 19 2 1 22 22 C 1.39439 * 120.09979 * 172.85811 * 21 19 2 23 23 N 1.32077 * 119.87112 * 179.97438 * 22 21 19 24 24 C 1.32133 * 120.07812 * 359.97438 * 23 22 21 25 25 C 1.38732 * 120.19044 * 0.27672 * 24 23 22 26 26 N 1.31802 * 120.12643 * 359.43514 * 25 24 23 27 27 H 1.09003 * 109.46796 * 263.80311 * 1 2 3 28 28 H 1.08994 * 109.47375 * 23.80670 * 1 2 3 29 29 H 1.08997 * 109.47055 * 143.80389 * 1 2 3 30 30 H 1.08998 * 109.47456 * 29.99974 * 3 2 1 31 31 H 1.09001 * 109.46549 * 150.00200 * 3 2 1 32 32 H 1.09000 * 109.47609 * 300.00475 * 4 3 2 33 33 H 1.09006 * 109.46943 * 60.00261 * 4 3 2 34 34 H 1.09000 * 109.47027 * 300.00723 * 5 4 3 35 35 H 1.09001 * 109.46480 * 60.00254 * 5 4 3 36 36 H 0.97001 * 120.00008 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.46946 * 299.99238 * 9 7 6 38 38 H 1.08994 * 109.47603 * 60.00091 * 9 7 6 39 39 H 0.97006 * 120.00241 * 179.97438 * 14 13 11 40 40 H 1.08001 * 120.06340 * 359.95744 * 22 21 19 41 41 H 1.07993 * 119.90738 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.93625 * 179.70327 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4426 6 7 3.4616 3.4584 -2.8237 7 6 4.1248 4.6055 -3.0701 8 8 4.5204 5.2872 -2.1482 9 6 4.3749 5.0411 -4.4909 10 16 5.2820 6.6074 -4.4909 11 6 5.4340 6.8730 -6.2261 12 1 5.0193 6.1571 -6.9203 13 6 6.0868 8.0022 -6.7008 14 7 6.5927 8.8744 -5.8548 15 14 6.2486 8.2833 -8.5405 16 1 5.6006 7.1645 -9.2710 17 1 5.5871 9.5615 -8.9060 18 1 7.6863 8.3475 -8.9068 19 6 2.1389 -1.1671 0.0005 20 8 3.3534 -1.1675 0.0409 21 6 1.3991 -2.4497 -0.0482 22 6 2.0912 -3.6510 -0.1978 23 7 1.4271 -4.7919 -0.2402 24 6 0.1095 -4.7953 -0.1405 25 6 -0.5824 -3.6015 0.0032 26 7 0.0729 -2.4589 0.0521 27 1 -0.3633 -0.1109 1.0217 28 1 -0.3634 0.9402 -0.4148 29 1 -0.3633 -0.8293 -0.6069 30 1 1.6084 2.0285 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.0415 0.9509 -1.9564 33 1 1.5000 1.8408 -1.9563 34 1 2.6292 3.7950 -0.9285 35 1 4.1704 2.9044 -0.9289 36 1 3.1462 2.9127 -3.5610 37 1 4.9630 4.2813 -5.0057 38 1 3.4222 5.1726 -5.0037 39 1 7.0492 9.6634 -6.1865 40 1 3.1681 -3.6484 -0.2791 41 1 -0.4306 -5.7298 -0.1751 42 1 -1.6596 -3.6087 0.0795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720447148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:24 Heat of formation + Delta-G solvation = -6.412988 kcal Electronic energy + Delta-G solvation = -24912.555717 eV Core-core repulsion = 21020.006282 eV Total energy + Delta-G solvation = -3892.549435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95344 -39.98836 -39.11256 -36.67490 -35.42032 -34.63945 -32.57036 -32.41752 -31.69992 -29.26205 -27.36784 -26.64252 -25.48767 -25.30684 -24.50848 -22.19239 -20.77155 -20.12173 -18.49752 -17.84702 -17.82453 -17.47705 -16.63098 -16.43155 -16.12965 -15.95353 -15.56947 -15.34842 -14.92917 -14.79483 -14.53259 -14.20024 -13.86386 -13.58785 -13.46040 -13.29353 -13.08745 -12.80924 -12.71612 -12.44978 -12.01429 -11.85932 -11.81339 -11.47953 -11.09552 -11.05525 -11.00740 -10.82998 -10.74825 -10.12888 -9.79818 -9.63880 -9.42646 -9.10522 -9.06773 -8.86878 -8.21588 -6.48530 -6.20657 -3.91000 -0.25622 0.34747 2.15398 2.33075 3.05178 3.12150 3.12426 3.22370 3.25595 3.29647 3.34784 3.53618 3.72622 3.76392 4.02389 4.21417 4.44874 4.46811 4.62406 4.68886 4.80142 4.85000 4.90587 5.13145 5.14648 5.21204 5.23892 5.31046 5.47211 5.55300 5.64222 5.71650 5.82282 5.92216 5.94860 6.06555 6.15737 6.40713 6.62925 6.75511 6.98534 7.55216 7.60986 7.72416 8.36574 8.63440 9.24785 10.86847 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.001564 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.533668 B =17902.733534 C =18314.598183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.594 5.594 3 C 0.115 3.885 4 C -0.146 4.146 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.571 3.429 20 O -0.522 6.522 21 C 0.029 3.971 22 C 0.113 3.887 23 N -0.439 5.439 24 C 0.073 3.927 25 C 0.043 3.957 26 N -0.405 5.405 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.184 0.816 41 H 0.177 0.823 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.172 -27.906 12.775 36.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.325 5.325 3 C -0.007 4.007 4 C -0.185 4.185 5 C 0.000 4.000 6 N -0.394 5.394 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.356 3.644 20 O -0.398 6.398 21 C -0.111 4.111 22 C -0.047 4.047 23 N -0.153 5.153 24 C -0.087 4.087 25 C -0.119 4.119 26 N -0.123 5.123 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.201 0.799 41 H 0.194 0.806 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.723 -26.554 14.392 35.019 hybrid contribution -0.777 -0.908 -2.618 2.877 sum -18.500 -27.462 11.774 35.143 Atomic orbital electron populations 1.22400 0.77802 1.03604 1.03063 1.47725 1.08134 1.05369 1.71272 1.21508 0.98484 0.83916 0.96820 1.22137 1.01206 0.97435 0.97676 1.21129 1.00164 0.94608 0.84111 1.45971 1.60340 1.25012 1.08054 1.20305 0.76717 0.79908 0.91328 1.90703 1.49258 1.53135 1.46082 1.23530 1.05388 1.06385 0.95103 1.85399 1.70329 1.17874 1.09808 1.22915 1.42847 1.11030 0.91550 0.90878 1.24992 0.94672 0.94929 0.99006 1.70029 1.34910 1.11056 1.34280 0.86114 0.78033 0.78251 0.83076 1.19637 1.20575 1.20557 1.17706 0.86501 0.82692 0.77526 1.90849 1.12534 1.86578 1.49817 1.22210 0.91165 0.95974 1.01780 1.23886 1.02578 0.86894 0.91323 1.68664 1.08911 1.28630 1.09101 1.24162 0.91147 1.00324 0.93100 1.24042 1.02461 0.88681 0.96682 1.68907 1.07396 1.28551 1.07480 0.92271 0.91604 0.87912 0.89467 0.88944 0.90763 0.91014 0.91454 0.91297 0.76870 0.89218 0.89243 0.92240 0.79920 0.80613 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 9.32 59.85 0.56 0.96 16 2 N -0.59 -4.72 2.87 -182.58 -0.52 -5.24 16 3 C 0.12 0.91 5.40 -4.04 -0.02 0.89 16 4 C -0.15 -1.23 5.65 -26.73 -0.15 -1.38 16 5 C 0.12 1.43 5.67 -4.05 -0.02 1.41 16 6 N -0.74 -10.01 5.56 -60.30 -0.33 -10.35 16 7 C 0.53 10.10 7.85 -10.99 -0.09 10.01 16 8 O -0.52 -11.96 15.86 5.55 0.09 -11.87 16 9 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 12 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.57 5.55 7.66 -12.19 -0.09 5.45 16 20 O -0.52 -6.60 15.93 5.35 0.09 -6.51 16 21 C 0.03 0.23 6.62 -82.84 -0.55 -0.32 16 22 C 0.11 0.87 10.77 -17.00 -0.18 0.68 16 23 N -0.44 -3.09 10.49 -12.71 -0.13 -3.23 16 24 C 0.07 0.29 11.23 -17.24 -0.19 0.09 16 25 C 0.04 0.15 11.22 -17.38 -0.20 -0.05 16 26 N -0.40 -2.44 6.23 -9.61 -0.06 -2.50 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.29 8.02 -51.93 -0.42 -0.13 16 29 H 0.10 0.57 5.26 -51.99 -0.27 0.30 16 30 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.09 0.85 7.39 -51.93 -0.38 0.47 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.18 1.31 7.67 -52.49 -0.40 0.91 16 41 H 0.18 0.07 8.06 -52.49 -0.42 -0.36 16 42 H 0.18 -0.05 8.06 -52.49 -0.42 -0.47 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -38.18 378.26 -7.79 -45.97 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.59 Total: -0.75 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.52 Total: 1.74 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.32 Total: -46.93 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.18 -7.79 -45.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720447148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.556 kcal (2) G-P(sol) polarization free energy of solvation -38.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds