Wall clock time and date at job start Tue Mar 31 2020 20:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99635 * 2 1 4 4 C 1.52999 * 109.47105 * 269.99795 * 3 2 1 5 5 C 1.53001 * 109.47422 * 180.02562 * 4 3 2 6 6 N 1.46491 * 109.47441 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00368 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99730 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00249 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47146 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00342 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99363 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00187 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00065 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99792 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47132 * 120.00518 * 15 13 11 18 18 H 1.48501 * 109.46805 * 240.00158 * 15 13 11 19 19 C 1.34771 * 120.00215 * 179.97438 * 2 1 3 20 20 O 1.21519 * 120.00039 * 182.19742 * 19 2 1 21 21 C 1.48149 * 120.00260 * 2.20176 * 19 2 1 22 22 C 1.39439 * 120.09979 * 172.85811 * 21 19 2 23 23 N 1.32077 * 119.87112 * 179.97438 * 22 21 19 24 24 C 1.32133 * 120.07812 * 359.97438 * 23 22 21 25 25 C 1.38732 * 120.19044 * 0.27672 * 24 23 22 26 26 N 1.31802 * 120.12643 * 359.43514 * 25 24 23 27 27 H 1.09003 * 109.46796 * 263.80311 * 1 2 3 28 28 H 1.08994 * 109.47375 * 23.80670 * 1 2 3 29 29 H 1.08997 * 109.47055 * 143.80389 * 1 2 3 30 30 H 1.08998 * 109.47456 * 29.99974 * 3 2 1 31 31 H 1.09001 * 109.46549 * 150.00200 * 3 2 1 32 32 H 1.09000 * 109.47609 * 300.00475 * 4 3 2 33 33 H 1.09006 * 109.46943 * 60.00261 * 4 3 2 34 34 H 1.09000 * 109.47027 * 300.00723 * 5 4 3 35 35 H 1.09001 * 109.46480 * 60.00254 * 5 4 3 36 36 H 0.97001 * 120.00008 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.46946 * 299.99238 * 9 7 6 38 38 H 1.08994 * 109.47603 * 60.00091 * 9 7 6 39 39 H 0.97006 * 120.00241 * 179.97438 * 14 13 11 40 40 H 1.08001 * 120.06340 * 359.95744 * 22 21 19 41 41 H 1.07993 * 119.90738 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.93625 * 179.70327 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4426 6 7 3.4616 3.4584 -2.8237 7 6 4.1248 4.6055 -3.0701 8 8 4.5204 5.2872 -2.1482 9 6 4.3749 5.0411 -4.4909 10 16 5.2820 6.6074 -4.4909 11 6 5.4340 6.8730 -6.2261 12 1 5.0193 6.1571 -6.9203 13 6 6.0868 8.0022 -6.7008 14 7 6.5927 8.8744 -5.8548 15 14 6.2486 8.2833 -8.5405 16 1 5.6006 7.1645 -9.2710 17 1 5.5871 9.5615 -8.9060 18 1 7.6863 8.3475 -8.9068 19 6 2.1389 -1.1671 0.0005 20 8 3.3534 -1.1675 0.0409 21 6 1.3991 -2.4497 -0.0482 22 6 2.0912 -3.6510 -0.1978 23 7 1.4271 -4.7919 -0.2402 24 6 0.1095 -4.7953 -0.1405 25 6 -0.5824 -3.6015 0.0032 26 7 0.0729 -2.4589 0.0521 27 1 -0.3633 -0.1109 1.0217 28 1 -0.3634 0.9402 -0.4148 29 1 -0.3633 -0.8293 -0.6069 30 1 1.6084 2.0285 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.0415 0.9509 -1.9564 33 1 1.5000 1.8408 -1.9563 34 1 2.6292 3.7950 -0.9285 35 1 4.1704 2.9044 -0.9289 36 1 3.1462 2.9127 -3.5610 37 1 4.9630 4.2813 -5.0057 38 1 3.4222 5.1726 -5.0037 39 1 7.0492 9.6634 -6.1865 40 1 3.1681 -3.6484 -0.2791 41 1 -0.4306 -5.7298 -0.1751 42 1 -1.6596 -3.6087 0.0795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720447148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:23 Heat of formation + Delta-G solvation = -35.265744 kcal Electronic energy + Delta-G solvation = -24913.806867 eV Core-core repulsion = 21020.006282 eV Total energy + Delta-G solvation = -3893.800584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.40985 -40.74607 -40.45574 -37.47071 -36.27202 -35.34820 -34.58979 -33.27108 -32.49541 -30.66580 -27.95742 -27.71765 -27.28909 -25.76157 -25.13896 -23.00904 -21.89845 -21.04602 -19.82909 -18.99796 -18.36157 -17.88552 -17.80972 -17.50606 -16.97782 -16.88776 -16.83386 -16.71169 -16.05217 -15.70912 -15.60293 -15.42121 -14.85298 -14.64920 -14.39501 -14.14159 -13.94526 -13.88190 -13.70116 -13.35774 -13.17530 -13.16403 -12.91106 -12.70144 -12.58307 -12.45421 -11.98961 -11.80804 -11.71673 -11.52854 -11.16224 -11.01292 -10.55795 -10.27987 -10.13778 -10.06576 -9.75120 -8.67321 -8.35142 -6.13387 -0.70431 -0.04534 1.26171 1.41333 1.45892 1.54432 1.58692 1.60060 1.74629 2.26091 2.31810 2.66447 2.82748 2.99091 3.16182 3.31647 3.36784 3.57021 3.87148 3.90777 3.96882 4.08746 4.15220 4.26661 4.29370 4.41938 4.43978 4.50218 4.51799 4.56320 4.71377 4.86123 5.00932 5.06384 5.13996 5.30898 5.41334 5.42014 5.50865 6.01439 6.15773 6.19723 6.48486 6.57386 6.89543 7.06219 7.22750 8.74414 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.001564 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.533668 B =17902.733534 C =18314.598183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.114 3.886 4 C -0.128 4.128 5 C 0.125 3.875 6 N -0.714 5.714 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.130 4.130 10 S -0.152 6.152 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.564 3.436 20 O -0.566 6.566 21 C 0.011 3.989 22 C 0.098 3.902 23 N -0.465 5.465 24 C 0.083 3.917 25 C 0.055 3.945 26 N -0.410 5.410 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.416 0.584 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.172 0.828 41 H 0.216 0.784 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.450 -29.962 11.491 39.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.320 5.320 3 C -0.009 4.009 4 C -0.166 4.166 5 C 0.000 4.000 6 N -0.368 5.368 7 C 0.318 3.682 8 O -0.444 6.444 9 C -0.281 4.281 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.200 1.200 19 C 0.350 3.650 20 O -0.445 6.445 21 C -0.128 4.128 22 C -0.061 4.061 23 N -0.179 5.179 24 C -0.079 4.079 25 C -0.108 4.108 26 N -0.129 5.129 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.190 0.810 41 H 0.232 0.768 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.032 -28.639 13.102 37.871 hybrid contribution 0.059 -0.462 -2.126 2.176 sum -20.973 -29.102 10.976 37.513 Atomic orbital electron populations 1.22539 0.76003 1.04637 1.03623 1.47830 1.09186 1.04753 1.70260 1.21500 0.98323 0.84633 0.96404 1.21969 1.01393 0.95047 0.98227 1.21248 1.00004 0.96248 0.82470 1.45733 1.58081 1.23103 1.09839 1.20075 0.77043 0.80957 0.90087 1.90692 1.51673 1.55063 1.47006 1.23374 1.05432 1.02440 0.96857 1.85581 1.72491 1.23497 1.10947 1.23247 1.43067 1.11595 0.91542 0.89887 1.26136 0.93941 0.94429 1.04657 1.70190 1.35857 1.11772 1.36954 0.84891 0.78243 0.78632 0.76078 1.18042 1.19824 1.19975 1.18071 0.86217 0.83786 0.76909 1.90813 1.14372 1.87302 1.51989 1.21879 0.92068 0.94912 1.03926 1.23755 1.02454 0.87432 0.92411 1.68675 1.10747 1.28300 1.10186 1.24899 0.90112 1.02274 0.90605 1.24800 1.04222 0.87561 0.94207 1.68900 1.06284 1.29942 1.07766 0.91740 0.89946 0.87652 0.87154 0.90895 0.91875 0.88873 0.91056 0.92842 0.74748 0.87384 0.86978 0.91973 0.81043 0.76788 0.76045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.32 127.77 1.19 1.83 16 2 N -0.59 -8.87 2.87 -849.85 -2.44 -11.31 16 3 C 0.11 1.71 5.40 86.38 0.47 2.17 16 4 C -0.13 -1.96 5.65 30.59 0.17 -1.79 16 5 C 0.12 2.74 5.67 86.38 0.49 3.23 16 6 N -0.71 -18.24 5.56 -463.08 -2.57 -20.82 16 7 C 0.53 20.01 7.85 87.66 0.69 20.69 16 8 O -0.57 -26.72 15.86 -3.04 -0.05 -26.77 16 9 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 10 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 11 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.75 5.49 84.86 0.47 1.22 16 14 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 15 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 C 0.56 11.26 7.66 86.88 0.67 11.92 16 20 O -0.57 -15.35 15.93 -3.78 -0.06 -15.41 16 21 C 0.01 0.17 6.62 41.89 0.28 0.44 16 22 C 0.10 1.56 10.77 84.95 0.92 2.48 16 23 N -0.46 -6.16 10.49 -194.13 -2.04 -8.19 16 24 C 0.08 0.40 11.23 84.77 0.95 1.35 16 25 C 0.05 0.19 11.22 84.82 0.95 1.14 16 26 N -0.41 -4.13 6.23 -184.33 -1.15 -5.28 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.46 8.02 -2.39 -0.02 0.44 16 29 H 0.11 0.91 5.26 -2.51 -0.01 0.90 16 30 H 0.11 1.13 8.07 -2.39 -0.02 1.12 16 31 H 0.07 1.40 7.39 -2.39 -0.02 1.38 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.42 7.77 8.47 -92.71 -0.79 6.98 16 37 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 38 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 40 H 0.17 2.88 7.67 -2.91 -0.02 2.86 16 41 H 0.22 -0.78 8.06 -2.91 -0.02 -0.80 16 42 H 0.22 -1.29 8.06 -2.91 -0.02 -1.32 16 Total: -1.00 -87.58 378.26 1.43 -86.15 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.27 Total: 12.53 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 8.32 Total: 9.04 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -7.91 Total: -101.73 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.11 Total: -42.19 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -87.58 1.43 -86.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720447148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.885 kcal (2) G-P(sol) polarization free energy of solvation -87.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds