Wall clock time and date at job start Tue Mar 31 2020 20:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47499 * 2 1 4 4 N 1.28441 * 125.18627 * 273.13874 * 3 2 1 5 5 C 1.30867 * 110.92550 * 179.97438 * 4 3 2 6 6 C 1.39677 * 107.86084 * 359.76647 * 5 4 3 7 7 C 1.36592 * 125.19057 * 93.10775 * 3 2 1 8 8 C 1.47160 * 126.88771 * 359.97438 * 7 3 2 9 9 O 1.21628 * 119.99682 * 5.32771 * 8 7 3 10 10 N 1.34777 * 120.00370 * 185.32829 * 8 7 3 11 11 C 1.46501 * 120.00065 * 174.60968 * 10 8 7 12 12 C 1.53497 * 114.20186 * 204.99676 * 11 10 8 13 13 N 1.47073 * 87.98598 * 220.14569 * 12 11 10 14 14 C 1.34768 * 136.06088 * 207.09001 * 13 12 11 15 15 O 1.21288 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00188 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47088 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99751 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00145 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99846 * 179.72221 * 18 17 16 21 21 N 1.31621 * 120.00109 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00099 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47195 * 89.99583 * 22 20 18 24 24 H 1.48493 * 109.47248 * 210.00322 * 22 20 18 25 25 H 1.48502 * 109.46739 * 330.00006 * 22 20 18 26 26 C 1.47072 * 87.88107 * 27.34496 * 13 12 11 27 27 H 1.08997 * 109.46931 * 60.00012 * 1 2 3 28 28 H 1.09000 * 109.47641 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46831 * 300.00401 * 1 2 3 30 30 H 1.08998 * 109.46831 * 239.99599 * 2 1 3 31 31 H 1.09004 * 109.46725 * 119.99631 * 2 1 3 32 32 H 1.07994 * 126.06834 * 180.02562 * 5 4 3 33 33 H 1.08001 * 127.31734 * 180.26840 * 6 5 4 34 34 H 0.96999 * 119.99655 * 354.60315 * 10 8 7 35 35 H 1.09001 * 113.28196 * 338.06519 * 11 10 8 36 36 H 1.09003 * 113.46344 * 105.36873 * 12 11 10 37 37 H 1.08999 * 113.47133 * 334.92577 * 12 11 10 38 38 H 1.08994 * 109.47093 * 59.99765 * 16 14 13 39 39 H 1.09001 * 109.47070 * 299.99434 * 16 14 13 40 40 H 0.97001 * 120.00425 * 180.02562 * 21 20 18 41 41 H 1.08998 * 113.46785 * 87.43979 * 26 13 12 42 42 H 1.09002 * 113.46727 * 217.87833 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2110 2.0981 -1.0482 5 6 2.6500 3.2882 -0.7262 6 6 2.7457 3.3473 0.6660 7 6 2.3379 2.1031 1.1146 8 6 2.2580 1.6511 2.5128 9 8 1.9676 0.4968 2.7630 10 7 2.5066 2.5160 3.5160 11 6 2.3126 2.0997 4.9072 12 6 2.0357 3.2564 5.8775 13 7 2.9031 2.5778 6.8522 14 6 3.0054 2.5346 8.1953 15 8 2.2415 3.1789 8.8827 16 6 4.0687 1.6856 8.8432 17 16 3.9491 1.8381 10.6428 18 6 5.2676 0.7747 11.1282 19 1 5.8575 0.2690 10.3781 20 6 5.5514 0.5912 12.4744 21 7 6.5360 -0.2035 12.8370 22 14 4.5351 1.4709 13.7716 23 1 3.3788 0.6214 14.1546 24 1 5.3763 1.7305 14.9674 25 1 4.0421 2.7601 13.2238 26 6 3.6140 1.9723 5.7160 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.8910 4.0846 -1.4146 33 1 3.0705 4.1853 1.2649 34 1 2.8141 3.4142 3.3169 35 1 1.6322 1.2548 5.0131 36 1 0.9941 3.3186 6.1927 37 1 2.4313 4.2132 5.5366 38 1 5.0521 2.0220 8.5149 39 1 3.9265 0.6437 8.5563 40 1 6.7341 -0.3321 13.7778 41 1 4.4257 2.5905 5.3326 42 1 3.9171 0.9405 5.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721338619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:30 Heat of formation + Delta-G solvation = 53.143047 kcal Electronic energy + Delta-G solvation = -25548.494105 eV Core-core repulsion = 21658.527213 eV Total energy + Delta-G solvation = -3889.966892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.99304 -40.87119 -39.37191 -37.70510 -35.19652 -34.21898 -32.46556 -31.52823 -30.36674 -30.21398 -27.90064 -26.25107 -25.62333 -24.75284 -23.80560 -22.41136 -21.42015 -20.52224 -19.28506 -18.40882 -17.79092 -17.19144 -16.86086 -16.57557 -16.21826 -15.63251 -15.44466 -15.09462 -14.96147 -14.80633 -14.60411 -14.30514 -14.07127 -13.56404 -13.48205 -13.12081 -13.03843 -12.99245 -12.81396 -12.73401 -12.53192 -12.00401 -11.78177 -11.50575 -11.28980 -11.26504 -11.02903 -10.65934 -10.55167 -9.89349 -9.80258 -9.67436 -9.54239 -9.46046 -9.02970 -8.84840 -8.54592 -6.96051 -6.31096 -4.03725 0.76723 1.83299 2.17075 2.35651 2.68137 2.69005 2.87829 3.13350 3.31529 3.48316 3.53798 3.90125 4.03115 4.08409 4.29332 4.34168 4.50069 4.55040 4.59849 4.67486 4.72625 4.82129 4.95867 5.06955 5.07888 5.08166 5.15408 5.23672 5.24199 5.35380 5.36670 5.47672 5.60208 5.70262 5.73441 5.91976 5.97151 6.02719 6.27454 6.82241 7.52251 7.60689 7.64776 7.91813 8.29667 8.39504 9.14711 10.78036 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.001856 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.316009 B =15078.788938 C =15346.895386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.251 5.251 4 N -0.275 5.275 5 C -0.004 4.004 6 C -0.187 4.187 7 C -0.041 4.041 8 C 0.597 3.403 9 O -0.531 6.531 10 N -0.701 5.701 11 C 0.113 3.887 12 C 0.099 3.901 13 N -0.648 5.648 14 C 0.566 3.434 15 O -0.512 6.512 16 C -0.116 4.116 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.086 3.914 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 6.180 -29.724 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.040 5.040 4 N -0.108 5.108 5 C -0.179 4.179 6 C -0.217 4.217 7 C -0.169 4.169 8 C 0.383 3.617 9 O -0.408 6.408 10 N -0.353 5.353 11 C 0.007 3.993 12 C -0.026 4.026 13 N -0.388 5.388 14 C 0.356 3.644 15 O -0.385 6.385 16 C -0.266 4.266 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.039 4.039 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.204 0.796 33 H 0.179 0.821 34 H 0.243 0.757 35 H 0.154 0.846 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.614 5.377 -28.996 31.343 hybrid contribution 1.204 0.506 0.390 1.363 sum -9.410 5.884 -28.606 30.684 Atomic orbital electron populations 1.22086 0.93327 1.03734 1.03031 1.22308 0.96311 0.76382 1.06307 1.45911 1.43967 1.12427 1.01655 1.73239 1.18265 1.05470 1.13829 1.23603 1.04211 0.95107 0.95021 1.22279 1.07019 0.96567 0.95800 1.21327 1.11788 0.94161 0.89671 1.16914 0.76594 0.85130 0.83094 1.90812 1.48151 1.17371 1.84437 1.45440 1.68329 1.16461 1.05088 1.22991 0.98647 0.99506 0.78179 1.23218 0.97589 0.95903 0.85855 1.49270 1.36329 1.49802 1.03365 1.19888 0.84686 0.81366 0.78474 1.90729 1.43309 1.43911 1.60583 1.23218 0.99587 1.02060 1.01752 1.84795 1.46913 1.63623 0.96138 1.22292 1.17267 1.31040 0.96307 0.89332 1.24712 0.94528 0.94206 0.97856 1.69931 1.28440 1.35580 1.17602 0.86735 0.80755 0.82550 0.81818 1.19161 1.19889 1.15931 1.23551 0.95986 1.00607 0.83708 0.91779 0.89866 0.91756 0.88301 0.86031 0.79595 0.82088 0.75660 0.84648 0.89410 0.89518 0.88431 0.88371 0.91897 0.89277 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.11 0.75 6.66 -4.04 -0.03 0.72 16 3 N -0.25 -2.18 3.35 -57.14 -0.19 -2.37 16 4 N -0.28 -2.48 11.90 30.59 0.36 -2.11 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.12 10.50 -38.98 -0.41 -1.53 16 7 C -0.04 -0.33 6.96 -82.06 -0.57 -0.90 16 8 C 0.60 5.05 7.79 -12.64 -0.10 4.95 16 9 O -0.53 -5.98 14.24 5.25 0.07 -5.90 16 10 N -0.70 -4.19 5.38 -54.64 -0.29 -4.49 16 11 C 0.11 0.87 4.59 -67.67 -0.31 0.55 16 12 C 0.10 0.86 8.38 -8.50 -0.07 0.79 16 13 N -0.65 -8.22 3.69 -185.05 -0.68 -8.90 16 14 C 0.57 10.15 8.10 -10.99 -0.09 10.06 16 15 O -0.51 -11.11 16.64 5.55 0.09 -11.02 16 16 C -0.12 -2.25 5.98 36.01 0.22 -2.04 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 22 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 26 C 0.09 0.77 8.25 -8.37 -0.07 0.70 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 0.95 6.04 -51.93 -0.31 0.64 16 32 H 0.19 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.16 0.42 7.58 -52.49 -0.40 0.02 16 34 H 0.41 1.31 7.79 -40.82 -0.32 1.00 16 35 H 0.14 1.23 7.51 -51.93 -0.39 0.84 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -37.19 376.15 -7.59 -44.79 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.65 Total: -1.91 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.04 Total: 0.50 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.03 Total: -43.53 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.17 Total: -16.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.19 -7.59 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721338619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.929 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds