Wall clock time and date at job start Tue Mar 31 2020 20:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47499 * 2 1 4 4 N 1.28441 * 125.18627 * 273.13874 * 3 2 1 5 5 C 1.30867 * 110.92550 * 179.97438 * 4 3 2 6 6 C 1.39677 * 107.86084 * 359.76647 * 5 4 3 7 7 C 1.36592 * 125.19057 * 93.10775 * 3 2 1 8 8 C 1.47160 * 126.88771 * 359.97438 * 7 3 2 9 9 O 1.21628 * 119.99682 * 5.32771 * 8 7 3 10 10 N 1.34777 * 120.00370 * 185.32829 * 8 7 3 11 11 C 1.46501 * 120.00065 * 174.60968 * 10 8 7 12 12 C 1.53497 * 114.20186 * 204.99676 * 11 10 8 13 13 N 1.47073 * 87.98598 * 220.14569 * 12 11 10 14 14 C 1.34768 * 136.06088 * 207.09001 * 13 12 11 15 15 O 1.21288 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00188 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47088 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99751 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00145 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99846 * 179.72221 * 18 17 16 21 21 N 1.31621 * 120.00109 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00099 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47195 * 89.99583 * 22 20 18 24 24 H 1.48493 * 109.47248 * 210.00322 * 22 20 18 25 25 H 1.48502 * 109.46739 * 330.00006 * 22 20 18 26 26 C 1.47072 * 87.88107 * 27.34496 * 13 12 11 27 27 H 1.08997 * 109.46931 * 60.00012 * 1 2 3 28 28 H 1.09000 * 109.47641 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46831 * 300.00401 * 1 2 3 30 30 H 1.08998 * 109.46831 * 239.99599 * 2 1 3 31 31 H 1.09004 * 109.46725 * 119.99631 * 2 1 3 32 32 H 1.07994 * 126.06834 * 180.02562 * 5 4 3 33 33 H 1.08001 * 127.31734 * 180.26840 * 6 5 4 34 34 H 0.96999 * 119.99655 * 354.60315 * 10 8 7 35 35 H 1.09001 * 113.28196 * 338.06519 * 11 10 8 36 36 H 1.09003 * 113.46344 * 105.36873 * 12 11 10 37 37 H 1.08999 * 113.47133 * 334.92577 * 12 11 10 38 38 H 1.08994 * 109.47093 * 59.99765 * 16 14 13 39 39 H 1.09001 * 109.47070 * 299.99434 * 16 14 13 40 40 H 0.97001 * 120.00425 * 180.02562 * 21 20 18 41 41 H 1.08998 * 113.46785 * 87.43979 * 26 13 12 42 42 H 1.09002 * 113.46727 * 217.87833 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2110 2.0981 -1.0482 5 6 2.6500 3.2882 -0.7262 6 6 2.7457 3.3473 0.6660 7 6 2.3379 2.1031 1.1146 8 6 2.2580 1.6511 2.5128 9 8 1.9676 0.4968 2.7630 10 7 2.5066 2.5160 3.5160 11 6 2.3126 2.0997 4.9072 12 6 2.0357 3.2564 5.8775 13 7 2.9031 2.5778 6.8522 14 6 3.0054 2.5346 8.1953 15 8 2.2415 3.1789 8.8827 16 6 4.0687 1.6856 8.8432 17 16 3.9491 1.8381 10.6428 18 6 5.2676 0.7747 11.1282 19 1 5.8575 0.2690 10.3781 20 6 5.5514 0.5912 12.4744 21 7 6.5360 -0.2035 12.8370 22 14 4.5351 1.4709 13.7716 23 1 3.3788 0.6214 14.1546 24 1 5.3763 1.7305 14.9674 25 1 4.0421 2.7601 13.2238 26 6 3.6140 1.9723 5.7160 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.8910 4.0846 -1.4146 33 1 3.0705 4.1853 1.2649 34 1 2.8141 3.4142 3.3169 35 1 1.6322 1.2548 5.0131 36 1 0.9941 3.3186 6.1927 37 1 2.4313 4.2132 5.5366 38 1 5.0521 2.0220 8.5149 39 1 3.9265 0.6437 8.5563 40 1 6.7341 -0.3321 13.7778 41 1 4.4257 2.5905 5.3326 42 1 3.9171 0.9405 5.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721338619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:29 Heat of formation + Delta-G solvation = 25.433124 kcal Electronic energy + Delta-G solvation = -25549.695697 eV Core-core repulsion = 21658.527213 eV Total energy + Delta-G solvation = -3891.168484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.52120 -41.74717 -40.25781 -38.87530 -35.76489 -34.89936 -34.68930 -32.33104 -31.51908 -30.72243 -29.00550 -27.86212 -27.00805 -25.35019 -24.43073 -23.05777 -22.08104 -21.19736 -20.45268 -19.58625 -18.97928 -18.17546 -17.88865 -17.23203 -17.20528 -16.92761 -16.71395 -16.27512 -15.91264 -15.75337 -15.56500 -15.35721 -14.92209 -14.77847 -14.55178 -14.23485 -14.01174 -13.87316 -13.66595 -13.51105 -13.35923 -13.21418 -13.02228 -13.01662 -12.68341 -12.31441 -12.26512 -11.87979 -11.80533 -11.29785 -11.18458 -11.05689 -10.57865 -10.41926 -10.12877 -9.98580 -9.87848 -9.03014 -8.52796 -6.24703 0.20455 0.89052 1.25111 1.31119 1.40992 1.47733 1.52363 1.67021 1.81829 2.09780 2.23251 2.25587 2.64085 2.85284 3.17374 3.43292 3.50402 3.59474 3.79306 3.99943 4.00509 4.09610 4.17233 4.21791 4.31336 4.38072 4.41370 4.52774 4.58141 4.60784 4.68554 4.76378 4.80017 4.86396 4.92239 5.09054 5.29513 5.59535 5.69252 5.76075 6.09872 6.29400 6.47667 6.91847 6.97107 6.97526 7.11252 8.59547 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.001856 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.316009 B =15078.788938 C =15346.895386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.103 3.897 3 N -0.265 5.265 4 N -0.303 5.303 5 C -0.010 4.010 6 C -0.172 4.172 7 C -0.062 4.062 8 C 0.598 3.402 9 O -0.565 6.565 10 N -0.681 5.681 11 C 0.130 3.870 12 C 0.101 3.899 13 N -0.648 5.648 14 C 0.568 3.432 15 O -0.559 6.559 16 C -0.103 4.103 17 S -0.172 6.172 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.916 5.916 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.236 1.236 26 C 0.084 3.916 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.214 0.786 33 H 0.198 0.802 34 H 0.425 0.575 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.277 0.723 41 H 0.120 0.880 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 8.134 -31.400 33.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.016 4.016 3 N -0.054 5.054 4 N -0.136 5.136 5 C -0.185 4.185 6 C -0.200 4.200 7 C -0.190 4.190 8 C 0.384 3.616 9 O -0.444 6.444 10 N -0.334 5.334 11 C 0.023 3.977 12 C -0.022 4.022 13 N -0.385 5.385 14 C 0.357 3.643 15 O -0.438 6.438 16 C -0.253 4.253 17 S 0.055 5.945 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.160 1.160 26 C -0.040 4.040 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.231 0.769 33 H 0.215 0.785 34 H 0.264 0.736 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.855 7.350 -30.744 33.422 hybrid contribution 1.317 -0.108 0.646 1.471 sum -9.538 7.243 -30.098 32.393 Atomic orbital electron populations 1.22023 0.92856 1.04463 1.02025 1.22336 0.96700 0.76330 1.06227 1.46051 1.44659 1.12823 1.01862 1.73216 1.19320 1.06625 1.14463 1.24209 1.03211 0.94975 0.96109 1.22752 1.05056 0.96479 0.95764 1.21475 1.13106 0.95178 0.89289 1.17038 0.76052 0.84813 0.83649 1.90805 1.49771 1.18923 1.84897 1.45173 1.67563 1.16939 1.03746 1.22571 0.97565 0.98700 0.78845 1.23516 0.97047 0.97399 0.84211 1.49107 1.37243 1.49628 1.02503 1.19371 0.83850 0.80914 0.80146 1.90706 1.44900 1.45907 1.62240 1.23166 1.01430 1.03433 0.97300 1.84684 1.45398 1.62684 1.01768 1.22432 1.17899 1.31306 0.96095 0.92020 1.25580 0.95597 0.94924 0.99937 1.70010 1.29899 1.36929 1.18514 0.85859 0.79482 0.81368 0.79615 1.18710 1.18201 1.15966 1.23883 0.97165 1.00946 0.82003 0.91987 0.88331 0.93312 0.87268 0.87141 0.76904 0.78485 0.73576 0.86058 0.89810 0.85998 0.87018 0.87413 0.91310 0.86259 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.24 71.98 0.74 -1.16 16 2 C 0.10 1.45 6.66 86.38 0.58 2.03 16 3 N -0.27 -4.39 3.35 -334.70 -1.12 -5.51 16 4 N -0.30 -5.07 11.90 -57.14 -0.68 -5.75 16 5 C -0.01 -0.11 12.03 85.18 1.02 0.92 16 6 C -0.17 -1.49 10.50 22.66 0.24 -1.25 16 7 C -0.06 -0.89 6.96 40.79 0.28 -0.61 16 8 C 0.60 9.10 7.79 86.59 0.67 9.78 16 9 O -0.57 -12.45 14.24 -4.12 -0.06 -12.51 16 10 N -0.68 -6.02 5.38 -445.03 -2.39 -8.41 16 11 C 0.13 1.66 4.59 45.55 0.21 1.87 16 12 C 0.10 1.45 8.38 83.18 0.70 2.14 16 13 N -0.65 -14.95 3.69 -857.77 -3.16 -18.12 16 14 C 0.57 19.75 8.10 87.66 0.71 20.46 16 15 O -0.56 -24.05 16.64 -3.06 -0.05 -24.11 16 16 C -0.10 -3.93 5.98 71.24 0.43 -3.50 16 17 S -0.17 -8.72 18.55 -56.49 -1.05 -9.76 16 18 C -0.53 -30.91 10.04 67.95 0.68 -30.22 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.05 2.65 5.50 84.86 0.47 3.12 16 21 N -0.92 -55.73 13.97 21.65 0.30 -55.43 16 22 Si 0.92 44.88 27.74 68.60 1.90 46.78 16 23 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 26 C 0.08 1.25 8.25 83.27 0.69 1.93 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.79 6.04 -2.39 -0.01 1.77 16 32 H 0.21 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.20 0.04 7.58 -2.91 -0.02 0.02 16 34 H 0.42 0.82 7.79 -92.71 -0.72 0.10 16 35 H 0.12 2.03 7.51 -2.39 -0.02 2.01 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.12 0.98 8.13 -2.39 -0.02 0.97 16 38 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 39 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -83.11 376.15 1.40 -81.71 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.30 Total: 5.60 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 7.41 Total: 5.50 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -7.06 Total: -93.22 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.11 Total: -36.62 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.76 kcal Total: -83.11 1.40 -81.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721338619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.148 kcal (2) G-P(sol) polarization free energy of solvation -83.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds