Wall clock time and date at job start Tue Mar 31 2020 20:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28438 * 125.19167 * 2 1 4 4 C 1.30859 * 110.93028 * 179.97438 * 3 2 1 5 5 C 1.39677 * 107.86296 * 0.02562 * 4 3 2 6 6 C 1.36605 * 125.18733 * 179.97438 * 2 1 3 7 7 C 1.47158 * 126.88726 * 359.97438 * 6 2 1 8 8 O 1.21626 * 119.99820 * 4.93287 * 7 6 2 9 9 N 1.34770 * 120.00209 * 184.93085 * 7 6 2 10 10 C 1.47072 * 136.05718 * 4.14020 * 9 7 6 11 11 C 1.53232 * 88.08296 * 207.20344 * 10 9 7 12 12 C 1.52997 * 114.32774 * 220.47063 * 11 10 9 13 13 N 1.46508 * 109.47266 * 268.76037 * 12 11 10 14 14 C 1.34773 * 120.00245 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99961 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47142 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99908 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00421 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99699 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46953 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47223 * 119.99326 * 22 20 18 25 25 H 1.48495 * 109.46959 * 239.99680 * 22 20 18 26 26 C 1.47073 * 136.05940 * 184.50976 * 9 7 6 27 27 H 1.09000 * 109.46896 * 85.21127 * 1 2 3 28 28 H 1.08995 * 109.47210 * 205.20784 * 1 2 3 29 29 H 1.08993 * 109.47136 * 325.21206 * 1 2 3 30 30 H 1.08002 * 126.07477 * 179.97438 * 4 3 2 31 31 H 1.07997 * 127.32281 * 179.73858 * 5 4 3 32 32 H 1.09002 * 113.46608 * 321.93596 * 10 9 7 33 33 H 1.08994 * 113.47002 * 92.37246 * 10 9 7 34 34 H 1.09003 * 114.20170 * 87.72344 * 11 10 9 35 35 H 1.09005 * 109.46932 * 28.75319 * 12 11 10 36 36 H 1.09001 * 109.47805 * 148.76018 * 12 11 10 37 37 H 0.96998 * 119.99554 * 359.97438 * 13 12 11 38 38 H 1.08994 * 109.47197 * 300.00052 * 16 14 13 39 39 H 1.09000 * 109.47104 * 59.99990 * 16 14 13 40 40 H 0.97006 * 119.99744 * 180.02562 * 21 20 18 41 41 H 1.09004 * 113.46335 * 267.62345 * 26 9 7 42 42 H 1.08996 * 113.46764 * 38.06009 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5613 -0.6668 0.0003 6 6 2.2522 -1.1164 0.0005 7 6 1.7993 -2.5166 0.0017 8 8 0.6136 -2.7722 -0.0883 9 7 2.6983 -3.5156 0.1023 10 6 4.1525 -3.6158 0.2979 11 6 4.1080 -4.9560 -0.4438 12 6 5.0027 -6.0404 0.1598 13 7 6.3223 -5.9941 -0.4751 14 6 7.2817 -6.8629 -0.0995 15 8 7.0529 -7.6829 0.7643 16 6 8.6388 -6.8156 -0.7530 17 16 9.6979 -8.0974 -0.0378 18 6 11.1755 -7.8213 -0.9569 19 1 11.2109 -7.0386 -1.7002 20 6 12.2938 -8.6105 -0.7265 21 7 12.2505 -9.5649 0.1791 22 14 13.8607 -8.3174 -1.7004 23 1 13.6512 -7.1940 -2.6488 24 1 14.9667 -7.9795 -0.7688 25 1 14.2096 -9.5459 -2.4581 26 6 2.6578 -4.9851 0.0585 27 1 -0.3633 0.0858 -1.0241 28 1 -0.3633 -0.9297 0.4377 29 1 -0.3633 0.8439 0.5863 30 1 4.3049 1.4166 0.0003 31 1 4.4595 -1.2663 -0.0033 32 1 4.7156 -2.8471 -0.2313 33 1 4.4445 -3.7080 1.3439 34 1 4.2043 -4.8711 -1.5262 35 1 5.1088 -5.8692 1.2311 36 1 4.5525 -7.0186 -0.0090 37 1 6.5053 -5.3381 -1.1657 38 1 8.5325 -6.9875 -1.8241 39 1 9.0890 -5.8373 -0.5850 40 1 13.0322 -10.1162 0.3404 41 1 2.5476 -5.4457 1.0403 42 1 1.9525 -5.3783 -0.6736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721381703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:14 Heat of formation + Delta-G solvation = 56.386161 kcal Electronic energy + Delta-G solvation = -25265.766944 eV Core-core repulsion = 21375.940684 eV Total energy + Delta-G solvation = -3889.826260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.95422 -40.94264 -39.18372 -38.28676 -34.65646 -33.76644 -32.45546 -32.05270 -30.69796 -29.14526 -27.55197 -26.64935 -26.14367 -25.43763 -23.19185 -21.95313 -21.09567 -20.35972 -19.73081 -18.05128 -17.78429 -17.12334 -16.92385 -16.54776 -16.30946 -15.83031 -15.47998 -15.30495 -14.82957 -14.78957 -14.35927 -14.12230 -13.97970 -13.71005 -13.52683 -13.24966 -13.13358 -13.06300 -12.81302 -12.67291 -12.51419 -11.88601 -11.77735 -11.33804 -11.09343 -11.04824 -10.97651 -10.78191 -10.50335 -9.83601 -9.71666 -9.49401 -9.48228 -9.24843 -9.10836 -8.99136 -8.26682 -6.53253 -6.24599 -3.95305 0.78708 1.76887 2.18281 2.44395 2.71442 2.94953 3.02589 3.19707 3.25314 3.29613 3.53733 3.75695 3.85009 4.09525 4.17622 4.32753 4.47583 4.62247 4.69236 4.71533 4.74044 4.88241 4.94071 5.04136 5.07345 5.10902 5.11595 5.14554 5.21947 5.38174 5.41783 5.50519 5.62326 5.79889 5.84893 6.03402 6.09726 6.24947 6.49346 7.05403 7.46190 7.57091 7.60488 7.64719 8.32622 8.53207 9.21095 10.82834 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.001757 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.985981 B =15933.294977 C =16945.355156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.258 5.258 3 N -0.277 5.277 4 C -0.003 4.003 5 C -0.189 4.189 6 C -0.036 4.036 7 C 0.623 3.377 8 O -0.541 6.541 9 N -0.635 5.635 10 C 0.098 3.902 11 C -0.136 4.136 12 C 0.134 3.866 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.120 3.880 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.189 0.811 31 H 0.165 0.835 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.096 0.904 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.315 18.441 -1.835 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.046 5.046 3 N -0.110 5.110 4 C -0.178 4.178 5 C -0.218 4.218 6 C -0.165 4.165 7 C 0.412 3.588 8 O -0.419 6.419 9 N -0.369 5.369 10 C -0.025 4.025 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.394 5.394 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.002 4.002 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.206 0.794 31 H 0.183 0.817 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.324 17.881 -0.347 29.392 hybrid contribution 1.951 0.902 -1.945 2.899 sum -21.373 18.783 -2.292 28.546 Atomic orbital electron populations 1.22392 0.72413 1.06138 1.04784 1.45657 1.07970 1.01613 1.49340 1.73242 1.04521 1.13489 1.19739 1.23653 0.93474 0.95074 1.05588 1.22572 0.95817 0.95673 1.07741 1.21228 0.91626 0.89199 1.14422 1.16272 0.84110 0.82091 0.76337 1.90794 1.15508 1.84027 1.51576 1.49071 1.09501 1.06989 1.71368 1.23442 0.80265 0.97054 1.01735 1.23211 0.95429 0.95187 1.01755 1.21131 0.82458 0.98096 0.97425 1.45969 1.12385 1.37991 1.43098 1.20316 0.85512 0.79944 0.82379 1.90715 1.81110 1.36358 1.30829 1.23530 0.95961 1.07042 1.03914 1.85414 1.06812 1.39344 1.51866 1.22904 0.98093 1.22000 1.25372 0.90845 1.24997 0.98714 0.94470 0.95422 1.70028 1.30254 1.18750 1.31215 0.86117 0.81626 0.78278 0.79474 1.19610 1.20563 1.20575 1.23004 0.95892 0.78853 1.02462 0.89614 0.87025 0.88843 0.79404 0.81737 0.89320 0.88377 0.86676 0.90827 0.90600 0.76699 0.89184 0.89153 0.92218 0.88637 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.91 59.85 0.65 1.22 16 2 N -0.26 -2.50 3.75 -63.88 -0.24 -2.74 16 3 N -0.28 -2.77 11.90 30.59 0.36 -2.41 16 4 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 5 C -0.19 -1.48 10.18 -38.98 -0.40 -1.87 16 6 C -0.04 -0.35 6.95 -82.06 -0.57 -0.92 16 7 C 0.62 6.38 8.04 -12.64 -0.10 6.28 16 8 O -0.54 -6.84 15.43 5.25 0.08 -6.76 16 9 N -0.63 -4.91 3.69 -186.75 -0.69 -5.60 16 10 C 0.10 0.51 7.06 -8.63 -0.06 0.45 16 11 C -0.14 -0.72 4.09 -90.24 -0.37 -1.09 16 12 C 0.13 1.10 5.59 -4.04 -0.02 1.08 16 13 N -0.74 -7.77 5.56 -60.29 -0.33 -8.10 16 14 C 0.53 8.86 7.85 -10.99 -0.09 8.77 16 15 O -0.52 -10.83 15.86 5.56 0.09 -10.74 16 16 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 22 Si 0.92 20.94 29.55 -169.99 -5.02 15.92 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.12 0.74 8.20 -8.50 -0.07 0.67 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.11 0.84 6.15 -51.93 -0.32 0.52 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.17 0.87 5.17 -52.49 -0.27 0.60 16 32 H 0.09 0.35 5.68 -51.93 -0.29 0.06 16 33 H 0.10 0.47 7.88 -51.93 -0.41 0.06 16 34 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.40 2.99 8.47 -40.82 -0.35 2.64 16 38 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 39 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -37.86 373.34 -7.81 -45.68 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.39 Total: -1.27 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.81 Total: -0.88 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.17 Total: -43.76 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.17 Total: -17.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.86 -7.81 -45.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721381703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.063 kcal (2) G-P(sol) polarization free energy of solvation -37.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds