Wall clock time and date at job start Tue Mar 31 2020 20:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28438 * 125.19167 * 2 1 4 4 C 1.30859 * 110.93028 * 179.97438 * 3 2 1 5 5 C 1.39677 * 107.86296 * 0.02562 * 4 3 2 6 6 C 1.36605 * 125.18733 * 179.97438 * 2 1 3 7 7 C 1.47158 * 126.88726 * 359.97438 * 6 2 1 8 8 O 1.21626 * 119.99820 * 4.93287 * 7 6 2 9 9 N 1.34770 * 120.00209 * 184.93085 * 7 6 2 10 10 C 1.47072 * 136.05718 * 4.14020 * 9 7 6 11 11 C 1.53232 * 88.08296 * 207.20344 * 10 9 7 12 12 C 1.52997 * 114.32774 * 220.47063 * 11 10 9 13 13 N 1.46508 * 109.47266 * 268.76037 * 12 11 10 14 14 C 1.34773 * 120.00245 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99961 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47142 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99908 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00421 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99699 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46953 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47223 * 119.99326 * 22 20 18 25 25 H 1.48495 * 109.46959 * 239.99680 * 22 20 18 26 26 C 1.47073 * 136.05940 * 184.50976 * 9 7 6 27 27 H 1.09000 * 109.46896 * 85.21127 * 1 2 3 28 28 H 1.08995 * 109.47210 * 205.20784 * 1 2 3 29 29 H 1.08993 * 109.47136 * 325.21206 * 1 2 3 30 30 H 1.08002 * 126.07477 * 179.97438 * 4 3 2 31 31 H 1.07997 * 127.32281 * 179.73858 * 5 4 3 32 32 H 1.09002 * 113.46608 * 321.93596 * 10 9 7 33 33 H 1.08994 * 113.47002 * 92.37246 * 10 9 7 34 34 H 1.09003 * 114.20170 * 87.72344 * 11 10 9 35 35 H 1.09005 * 109.46932 * 28.75319 * 12 11 10 36 36 H 1.09001 * 109.47805 * 148.76018 * 12 11 10 37 37 H 0.96998 * 119.99554 * 359.97438 * 13 12 11 38 38 H 1.08994 * 109.47197 * 300.00052 * 16 14 13 39 39 H 1.09000 * 109.47104 * 59.99990 * 16 14 13 40 40 H 0.97006 * 119.99744 * 180.02562 * 21 20 18 41 41 H 1.09004 * 113.46335 * 267.62345 * 26 9 7 42 42 H 1.08996 * 113.46764 * 38.06009 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5613 -0.6668 0.0003 6 6 2.2522 -1.1164 0.0005 7 6 1.7993 -2.5166 0.0017 8 8 0.6136 -2.7722 -0.0883 9 7 2.6983 -3.5156 0.1023 10 6 4.1525 -3.6158 0.2979 11 6 4.1080 -4.9560 -0.4438 12 6 5.0027 -6.0404 0.1598 13 7 6.3223 -5.9941 -0.4751 14 6 7.2817 -6.8629 -0.0995 15 8 7.0529 -7.6829 0.7643 16 6 8.6388 -6.8156 -0.7530 17 16 9.6979 -8.0974 -0.0378 18 6 11.1755 -7.8213 -0.9569 19 1 11.2109 -7.0386 -1.7002 20 6 12.2938 -8.6105 -0.7265 21 7 12.2505 -9.5649 0.1791 22 14 13.8607 -8.3174 -1.7004 23 1 13.6512 -7.1940 -2.6488 24 1 14.9667 -7.9795 -0.7688 25 1 14.2096 -9.5459 -2.4581 26 6 2.6578 -4.9851 0.0585 27 1 -0.3633 0.0858 -1.0241 28 1 -0.3633 -0.9297 0.4377 29 1 -0.3633 0.8439 0.5863 30 1 4.3049 1.4166 0.0003 31 1 4.4595 -1.2663 -0.0033 32 1 4.7156 -2.8471 -0.2313 33 1 4.4445 -3.7080 1.3439 34 1 4.2043 -4.8711 -1.5262 35 1 5.1088 -5.8692 1.2311 36 1 4.5525 -7.0186 -0.0090 37 1 6.5053 -5.3381 -1.1657 38 1 8.5325 -6.9875 -1.8241 39 1 9.0890 -5.8373 -0.5850 40 1 13.0322 -10.1162 0.3404 41 1 2.5476 -5.4457 1.0403 42 1 1.9525 -5.3783 -0.6736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721381703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:13 Heat of formation + Delta-G solvation = 27.786986 kcal Electronic energy + Delta-G solvation = -25267.007097 eV Core-core repulsion = 21375.940684 eV Total energy + Delta-G solvation = -3891.066413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.57016 -41.55822 -40.38302 -39.06935 -35.69479 -34.54526 -34.36040 -32.79592 -31.64919 -30.22905 -28.12830 -27.68234 -27.12172 -26.82819 -23.86125 -22.56196 -21.88551 -21.38330 -20.33843 -19.75885 -18.54993 -17.79283 -17.73301 -17.57754 -17.27087 -16.84521 -16.62008 -16.42127 -16.22535 -15.72724 -15.57413 -14.91232 -14.80634 -14.64082 -14.48454 -14.24454 -14.13321 -13.77574 -13.57438 -13.52780 -13.29891 -13.11433 -13.02756 -12.87890 -12.56876 -12.37994 -11.96399 -11.67280 -11.52769 -11.23701 -11.12558 -10.86871 -10.39851 -10.20776 -10.07459 -10.01623 -9.83688 -8.61196 -8.31393 -6.08175 0.12891 1.18185 1.32297 1.43888 1.51715 1.58349 1.62153 1.71243 1.87995 2.04450 2.29371 2.36225 3.03147 3.11387 3.26494 3.39176 3.55905 3.80396 3.92003 4.06437 4.11937 4.21772 4.22945 4.24797 4.36959 4.40217 4.46831 4.56952 4.58566 4.60828 4.62151 4.68167 4.80517 4.85314 4.95048 5.22332 5.46338 5.49488 5.52503 5.66310 6.23804 6.43413 6.60728 6.78482 7.01651 7.10717 7.34939 8.77832 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.001757 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.985981 B =15933.294977 C =16945.355156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.271 5.271 3 N -0.302 5.302 4 C -0.007 4.007 5 C -0.180 4.180 6 C -0.058 4.058 7 C 0.616 3.384 8 O -0.577 6.577 9 N -0.635 5.635 10 C 0.097 3.903 11 C -0.114 4.114 12 C 0.135 3.865 13 N -0.709 5.709 14 C 0.535 3.465 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.155 6.155 18 C -0.543 4.543 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.276 1.276 26 C 0.114 3.886 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.217 0.783 31 H 0.191 0.809 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.419 0.581 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.270 0.730 41 H 0.103 0.897 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.535 20.430 -3.375 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.059 5.059 3 N -0.135 5.135 4 C -0.182 4.182 5 C -0.209 4.209 6 C -0.186 4.186 7 C 0.406 3.594 8 O -0.458 6.458 9 N -0.368 5.368 10 C -0.025 4.025 11 C -0.133 4.133 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.072 5.928 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.008 4.008 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.233 0.767 31 H 0.208 0.792 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.256 0.744 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.557 19.914 -1.920 30.151 hybrid contribution 1.600 0.338 -1.464 2.195 sum -20.957 20.252 -3.383 29.339 Atomic orbital electron populations 1.22471 0.71725 1.06246 1.05466 1.45890 1.08658 1.01641 1.49677 1.73220 1.05545 1.14056 1.20665 1.24233 0.93570 0.95866 1.04512 1.22915 0.95865 0.95801 1.06318 1.21422 0.92582 0.89037 1.15556 1.16448 0.83971 0.82748 0.76217 1.90768 1.16976 1.84583 1.53473 1.49139 1.10409 1.07158 1.70127 1.23637 0.78904 0.97328 1.02591 1.23004 0.93869 0.94091 1.02372 1.21230 0.81298 0.98952 0.97486 1.45654 1.11882 1.36318 1.42519 1.19985 0.85740 0.80406 0.81825 1.90709 1.81831 1.38819 1.33190 1.23385 0.95667 1.04755 1.04371 1.85595 1.09271 1.43982 1.53982 1.23249 0.98423 1.22136 1.25325 0.89793 1.26104 1.02626 0.94037 0.96447 1.70192 1.31417 1.20048 1.33178 0.84932 0.76614 0.78605 0.77970 1.17895 1.20093 1.20181 1.23154 0.96364 0.78195 1.03068 0.88915 0.88041 0.87304 0.76655 0.79222 0.87305 0.87517 0.85096 0.90932 0.91256 0.74365 0.87228 0.86937 0.92101 0.87892 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.91 127.77 1.39 2.51 16 2 N -0.27 -5.09 3.75 -356.02 -1.33 -6.43 16 3 N -0.30 -5.71 11.90 -57.14 -0.68 -6.39 16 4 C -0.01 -0.09 12.03 85.19 1.02 0.93 16 5 C -0.18 -2.37 10.18 22.66 0.23 -2.13 16 6 C -0.06 -1.05 6.95 40.79 0.28 -0.77 16 7 C 0.62 12.14 8.04 86.59 0.70 12.84 16 8 O -0.58 -14.77 15.43 -4.11 -0.06 -14.83 16 9 N -0.64 -8.56 3.69 -863.00 -3.18 -11.75 16 10 C 0.10 0.68 7.06 83.09 0.59 1.27 16 11 C -0.11 -0.84 4.09 -10.55 -0.04 -0.88 16 12 C 0.13 1.86 5.59 86.38 0.48 2.34 16 13 N -0.71 -12.67 5.56 -463.05 -2.57 -15.24 16 14 C 0.53 16.92 7.85 87.66 0.69 17.61 16 15 O -0.57 -23.79 15.86 -3.03 -0.05 -23.84 16 16 C -0.13 -4.63 6.16 71.24 0.44 -4.19 16 17 S -0.16 -8.25 20.57 -56.49 -1.16 -9.41 16 18 C -0.54 -29.94 9.50 67.95 0.65 -29.30 16 19 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -54.91 13.22 21.65 0.29 -54.63 16 22 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.11 1.18 8.20 83.18 0.68 1.86 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.62 6.15 -2.39 -0.01 1.61 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.22 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.19 1.26 5.17 -2.91 -0.02 1.24 16 32 H 0.11 0.37 5.68 -2.39 -0.01 0.35 16 33 H 0.11 0.65 7.88 -2.39 -0.02 0.64 16 34 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.10 7.81 -2.38 -0.02 1.08 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.42 4.39 8.47 -92.71 -0.79 3.61 16 38 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 39 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 40 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 41 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -85.59 373.34 1.13 -84.47 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.28 Total: 10.31 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 7.58 Total: 3.25 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -7.49 Total: -94.43 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.11 Total: -38.67 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -85.59 1.13 -84.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721381703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.253 kcal (2) G-P(sol) polarization free energy of solvation -85.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds