Wall clock time and date at job start Tue Mar 31 2020 20:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 C 1.52998 * 109.46920 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46841 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00182 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99537 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00047 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47388 * 89.99848 * 11 9 7 13 13 H 1.48502 * 109.47485 * 209.99729 * 11 9 7 14 14 H 1.48498 * 109.47195 * 329.99860 * 11 9 7 15 15 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 2 1 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 2 1 18 18 H 1.08998 * 110.66629 * 307.03695 * 17 15 2 19 19 C 1.54706 * 110.75091 * 70.45794 * 17 15 2 20 20 C 1.51645 * 101.92717 * 93.04064 * 19 17 15 21 21 C 1.37748 * 132.14806 * 195.89058 * 20 19 17 22 22 C 1.38443 * 119.96463 * 179.03607 * 21 20 19 23 23 Cl 1.73602 * 120.13024 * 180.02562 * 22 21 20 24 24 C 1.38384 * 119.73988 * 359.97438 * 22 21 20 25 25 C 1.37925 * 120.33974 * 0.17838 * 24 22 21 26 26 C 1.38870 * 107.04805 * 15.37218 * 20 19 17 27 27 O 1.36156 * 111.23148 * 1.09299 * 26 20 19 28 28 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 29 29 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 30 30 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 32 32 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 33 33 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 34 34 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 35 35 H 1.08994 * 109.47702 * 299.99786 * 5 4 3 36 36 H 1.09001 * 109.47349 * 60.00353 * 5 4 3 37 37 H 0.97006 * 120.00123 * 359.97438 * 6 5 4 38 38 H 0.96999 * 120.00303 * 180.02562 * 10 9 7 39 39 H 1.09002 * 110.93626 * 211.20131 * 19 17 15 40 40 H 1.08993 * 110.93495 * 334.88076 * 19 17 15 41 41 H 1.08000 * 120.01613 * 359.02026 * 21 20 19 42 42 H 1.08005 * 119.83227 * 180.16811 * 24 22 21 43 43 H 1.08002 * 119.86969 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2169 3.0358 -1.4425 6 7 3.4615 3.4584 -2.8237 7 6 4.1347 4.6243 -3.0740 8 1 4.4857 5.2320 -2.2530 9 6 4.3670 5.0245 -4.3827 10 7 5.0145 6.1448 -4.6232 11 14 3.7605 3.9731 -5.8025 12 1 2.3875 4.3948 -6.1797 13 1 4.6673 4.1419 -6.9663 14 1 3.7444 2.5465 -5.3904 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 0.0053 18 1 0.6645 -2.4967 0.8224 19 6 0.6865 -2.7077 -1.3547 20 6 1.7235 -3.5229 -2.1030 21 6 1.8737 -3.8255 -3.4384 22 6 2.9480 -4.5919 -3.8571 23 17 3.1419 -4.9753 -5.5391 24 6 3.8672 -5.0501 -2.9297 25 6 3.7159 -4.7503 -1.5920 26 6 2.6349 -3.9844 -1.1623 27 8 2.2929 -3.5840 0.0933 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5137 33 1 3.0415 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 2.6275 3.7952 -0.9288 36 1 4.1693 2.9058 -0.9286 37 1 3.1472 2.9120 -3.5610 38 1 5.1765 6.4247 -5.5377 39 1 -0.2356 -3.2744 -1.2258 40 1 0.4936 -1.7626 -1.8622 41 1 1.1537 -3.4654 -4.1583 42 1 4.7073 -5.6458 -3.2551 43 1 4.4381 -5.1115 -0.8748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723068438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:48 Heat of formation + Delta-G solvation = -22.644338 kcal Electronic energy + Delta-G solvation = -26664.368440 eV Core-core repulsion = 22736.778703 eV Total energy + Delta-G solvation = -3927.589737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99506 -39.70370 -38.02357 -36.50538 -36.25576 -35.13902 -33.39029 -32.25959 -30.70790 -30.25264 -29.60549 -27.27107 -26.03851 -24.30267 -22.91946 -22.38838 -22.14047 -21.10312 -19.83566 -18.12157 -17.55571 -17.47677 -17.36449 -16.63954 -16.10456 -15.66348 -15.20490 -14.60184 -14.54518 -14.42545 -14.26307 -13.85322 -13.74108 -13.55137 -13.39379 -13.33210 -12.90299 -12.81341 -12.69309 -12.58248 -12.20856 -12.14655 -12.03121 -11.65664 -11.28998 -11.22149 -11.04675 -10.93278 -10.85063 -10.55192 -10.13835 -9.93791 -9.58260 -9.36918 -8.90168 -8.88281 -8.42569 -7.21992 -5.75466 -3.10936 0.74553 0.85483 1.81999 2.21543 2.46141 2.93456 3.21893 3.38331 3.42089 3.46233 3.81317 3.90109 4.03706 4.36425 4.60347 4.60710 4.67091 4.70269 4.78384 4.94043 4.96362 5.09160 5.11533 5.14081 5.19943 5.32565 5.45546 5.50802 5.55351 5.59299 5.72447 5.82456 5.86664 5.89314 5.97811 6.00413 6.19675 6.31588 6.63303 6.72220 6.74852 7.05675 7.86156 8.00746 8.43714 9.22602 9.95181 10.15082 11.43045 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.003342 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.697465 B = 8375.657229 C =10678.161375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.119 3.881 4 C -0.144 4.144 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.091 0.909 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.884 3.116 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.494 3.506 16 O -0.510 6.510 17 C 0.065 3.935 18 H 0.143 0.857 19 C -0.100 4.100 20 C -0.165 4.165 21 C -0.057 4.057 22 C -0.063 4.063 23 Cl -0.065 7.065 24 C -0.072 4.072 25 C -0.119 4.119 26 C 0.120 3.880 27 O -0.271 6.271 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -25.789 8.967 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.345 5.345 3 C -0.003 4.003 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.583 5.583 11 Si 0.714 3.286 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.279 3.721 16 O -0.384 6.384 17 C 0.005 3.995 18 H 0.160 0.840 19 C -0.137 4.137 20 C -0.166 4.166 21 C -0.076 4.076 22 C -0.090 4.090 23 Cl -0.036 7.036 24 C -0.091 4.091 25 C -0.138 4.138 26 C 0.074 3.926 27 O -0.183 6.183 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.045 -25.691 9.094 30.214 hybrid contribution -0.529 -0.458 -1.371 1.539 sum -13.575 -26.149 7.723 30.458 Atomic orbital electron populations 1.22047 0.79435 1.04012 1.02343 1.47857 1.07079 1.06099 1.73510 1.21532 0.97785 0.83141 0.97880 1.22114 1.01021 0.99096 0.96016 1.20508 0.96641 0.91811 0.87736 1.42701 1.69727 1.26218 1.01566 1.19078 1.27874 0.96839 0.93639 0.89163 1.24666 1.00415 0.97183 0.96881 1.69700 1.46056 1.23029 1.19475 0.86546 0.78442 0.80346 0.83235 1.21069 1.21626 1.20367 1.20787 0.88539 0.85341 0.77386 1.90785 1.13365 1.86741 1.47525 1.23375 0.90274 0.85128 1.00692 0.83956 1.21859 0.97903 1.01363 0.92560 1.20543 0.97921 1.04230 0.93928 1.20089 0.96903 0.96450 0.94112 1.20629 0.98780 1.03776 0.85806 1.98377 1.97262 1.93206 1.14787 1.20787 0.98373 0.98884 0.91052 1.20205 0.96237 1.01876 0.95472 1.19581 0.93655 0.95403 0.83922 1.86951 1.62574 1.44529 1.24247 0.91990 0.90022 0.90882 0.89928 0.89468 0.91701 0.91978 0.95441 0.95387 0.80726 0.93053 0.87347 0.87834 0.84515 0.83891 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 9.89 59.84 0.59 0.96 16 2 N -0.61 -6.29 2.87 -181.57 -0.52 -6.82 16 3 C 0.12 1.47 5.41 -4.04 -0.02 1.45 16 4 C -0.14 -2.23 5.65 -26.73 -0.15 -2.38 16 5 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 6 N -0.76 -18.75 5.41 -59.91 -0.32 -19.07 16 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 11 Si 0.88 22.71 27.74 -169.99 -4.71 18.00 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 15 C 0.49 6.15 6.93 -10.98 -0.08 6.07 16 16 O -0.51 -8.89 16.03 -13.48 -0.22 -9.11 16 17 C 0.07 0.58 3.17 -26.99 -0.09 0.50 16 18 H 0.14 0.73 7.94 -51.93 -0.41 0.32 16 19 C -0.10 -0.72 5.38 -26.52 -0.14 -0.87 16 20 C -0.17 -1.70 6.26 -104.10 -0.65 -2.35 16 21 C -0.06 -0.57 9.82 -39.68 -0.39 -0.96 16 22 C -0.06 -0.66 6.33 -39.45 -0.25 -0.91 16 23 Cl -0.07 -0.65 28.97 -51.86 -1.50 -2.15 16 24 C -0.07 -0.70 9.81 -39.64 -0.39 -1.09 16 25 C -0.12 -1.26 10.06 -39.31 -0.40 -1.65 16 26 C 0.12 1.40 6.83 -38.96 -0.27 1.13 16 27 O -0.27 -3.20 10.43 -39.28 -0.41 -3.61 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.07 0.27 4.72 -51.93 -0.25 0.03 16 31 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.09 1.23 7.42 -51.93 -0.39 0.84 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.36 8.74 5.53 -40.82 -0.23 8.51 16 38 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 39 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.71 6.59 -51.93 -0.34 0.37 16 41 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -37.27 371.64 -9.66 -46.93 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.85 Total: 3.66 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.51 Total: -4.25 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.07 Total: -55.07 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.63 Total: -12.72 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 18.00 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.27 -9.66 -46.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723068438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.290 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds