Wall clock time and date at job start Tue Mar 31 2020 20:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 C 1.52998 * 109.46920 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46841 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00182 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99537 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00047 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47388 * 89.99848 * 11 9 7 13 13 H 1.48502 * 109.47485 * 209.99729 * 11 9 7 14 14 H 1.48498 * 109.47195 * 329.99860 * 11 9 7 15 15 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 2 1 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 2 1 18 18 H 1.08998 * 110.66629 * 307.03695 * 17 15 2 19 19 C 1.54706 * 110.75091 * 70.45794 * 17 15 2 20 20 C 1.51645 * 101.92717 * 93.04064 * 19 17 15 21 21 C 1.37748 * 132.14806 * 195.89058 * 20 19 17 22 22 C 1.38443 * 119.96463 * 179.03607 * 21 20 19 23 23 Cl 1.73602 * 120.13024 * 180.02562 * 22 21 20 24 24 C 1.38384 * 119.73988 * 359.97438 * 22 21 20 25 25 C 1.37925 * 120.33974 * 0.17838 * 24 22 21 26 26 C 1.38870 * 107.04805 * 15.37218 * 20 19 17 27 27 O 1.36156 * 111.23148 * 1.09299 * 26 20 19 28 28 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 29 29 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 30 30 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 32 32 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 33 33 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 34 34 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 35 35 H 1.08994 * 109.47702 * 299.99786 * 5 4 3 36 36 H 1.09001 * 109.47349 * 60.00353 * 5 4 3 37 37 H 0.97006 * 120.00123 * 359.97438 * 6 5 4 38 38 H 0.96999 * 120.00303 * 180.02562 * 10 9 7 39 39 H 1.09002 * 110.93626 * 211.20131 * 19 17 15 40 40 H 1.08993 * 110.93495 * 334.88076 * 19 17 15 41 41 H 1.08000 * 120.01613 * 359.02026 * 21 20 19 42 42 H 1.08005 * 119.83227 * 180.16811 * 24 22 21 43 43 H 1.08002 * 119.86969 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2169 3.0358 -1.4425 6 7 3.4615 3.4584 -2.8237 7 6 4.1347 4.6243 -3.0740 8 1 4.4857 5.2320 -2.2530 9 6 4.3670 5.0245 -4.3827 10 7 5.0145 6.1448 -4.6232 11 14 3.7605 3.9731 -5.8025 12 1 2.3875 4.3948 -6.1797 13 1 4.6673 4.1419 -6.9663 14 1 3.7444 2.5465 -5.3904 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 0.0053 18 1 0.6645 -2.4967 0.8224 19 6 0.6865 -2.7077 -1.3547 20 6 1.7235 -3.5229 -2.1030 21 6 1.8737 -3.8255 -3.4384 22 6 2.9480 -4.5919 -3.8571 23 17 3.1419 -4.9753 -5.5391 24 6 3.8672 -5.0501 -2.9297 25 6 3.7159 -4.7503 -1.5920 26 6 2.6349 -3.9844 -1.1623 27 8 2.2929 -3.5840 0.0933 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5137 33 1 3.0415 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 2.6275 3.7952 -0.9288 36 1 4.1693 2.9058 -0.9286 37 1 3.1472 2.9120 -3.5610 38 1 5.1765 6.4247 -5.5377 39 1 -0.2356 -3.2744 -1.2258 40 1 0.4936 -1.7626 -1.8622 41 1 1.1537 -3.4654 -4.1583 42 1 4.7073 -5.6458 -3.2551 43 1 4.4381 -5.1115 -0.8748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723068438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:47 Heat of formation + Delta-G solvation = -46.869003 kcal Electronic energy + Delta-G solvation = -26665.418900 eV Core-core repulsion = 22736.778703 eV Total energy + Delta-G solvation = -3928.640197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.73314 -40.57753 -38.79115 -37.63942 -37.17452 -36.59361 -34.45116 -33.77277 -32.24930 -30.99968 -30.57889 -28.03670 -27.22655 -25.40088 -24.11393 -23.46171 -22.94391 -22.65666 -20.68718 -19.69013 -18.87714 -18.27034 -18.10633 -17.40237 -17.05338 -16.61124 -16.50985 -16.09333 -15.73350 -15.62264 -15.21021 -14.93669 -14.85835 -14.51515 -14.39312 -14.16052 -13.97936 -13.73016 -13.63540 -13.54035 -13.38795 -13.14533 -12.85803 -12.77099 -12.67069 -12.50067 -12.38998 -12.10704 -12.05421 -11.87541 -11.83421 -11.77274 -11.01580 -10.85585 -10.08777 -9.76096 -9.35449 -9.19305 -8.07058 -5.41385 -0.01136 0.11039 1.05556 1.33663 1.36719 1.37936 1.45051 1.69891 2.18829 2.44465 2.48493 3.18229 3.23473 3.24784 3.38497 3.57833 3.69931 3.97082 3.99871 4.05412 4.10958 4.16426 4.29845 4.38483 4.41461 4.53456 4.55519 4.62393 4.68035 4.73235 4.74580 4.86923 4.88837 4.99878 5.08938 5.14966 5.20435 5.23152 5.29008 5.46433 5.70807 5.89201 6.17108 6.26835 7.00633 7.02988 7.78742 7.97793 9.14515 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.003342 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.697465 B = 8375.657229 C =10678.161375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.604 5.604 3 C 0.124 3.876 4 C -0.125 4.125 5 C 0.156 3.844 6 N -0.761 5.761 7 C -0.241 4.241 8 H 0.057 0.943 9 C -0.062 4.062 10 N -0.982 5.982 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.260 1.260 15 C 0.484 3.516 16 O -0.575 6.575 17 C 0.066 3.934 18 H 0.187 0.813 19 C -0.091 4.091 20 C -0.172 4.172 21 C -0.066 4.066 22 C -0.075 4.075 23 Cl -0.065 7.065 24 C -0.077 4.077 25 C -0.135 4.135 26 C 0.093 3.907 27 O -0.291 6.291 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.013 0.987 37 H 0.365 0.635 38 H 0.260 0.740 39 H 0.149 0.851 40 H 0.112 0.888 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 -27.429 8.890 33.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.337 5.337 3 C 0.001 3.999 4 C -0.164 4.164 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.372 4.372 8 H 0.075 0.925 9 C -0.254 4.254 10 N -0.633 5.633 11 Si 0.783 3.217 12 H -0.194 1.194 13 H -0.220 1.220 14 H -0.185 1.185 15 C 0.272 3.728 16 O -0.454 6.454 17 C 0.007 3.993 18 H 0.204 0.796 19 C -0.128 4.128 20 C -0.173 4.173 21 C -0.084 4.084 22 C -0.101 4.101 23 Cl -0.036 7.036 24 C -0.096 4.096 25 C -0.154 4.154 26 C 0.048 3.952 27 O -0.203 6.203 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.198 0.802 38 H 0.068 0.932 39 H 0.167 0.833 40 H 0.130 0.870 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.612 -27.357 9.055 33.262 hybrid contribution 0.590 0.107 -1.239 1.376 sum -16.022 -27.250 7.816 32.563 Atomic orbital electron populations 1.22440 0.76027 1.05669 1.04567 1.47933 1.09023 1.04641 1.72101 1.21343 0.97928 0.85108 0.95548 1.21917 1.00592 0.95671 0.98249 1.20689 0.96783 0.94429 0.85133 1.42741 1.69229 1.24903 1.03809 1.19075 1.27442 0.97800 0.92907 0.92486 1.25529 1.01145 0.98747 0.99963 1.69882 1.47991 1.25273 1.20119 0.85388 0.78204 0.79190 0.78879 1.19430 1.22042 1.18494 1.21598 0.88083 0.87008 0.76120 1.90756 1.16274 1.87745 1.50636 1.23709 0.89836 0.82328 1.03388 0.79628 1.22019 0.98245 1.01786 0.90737 1.20930 0.98508 1.04064 0.93804 1.20337 0.97160 0.96392 0.94549 1.20827 0.99249 1.04129 0.85921 1.98372 1.97288 1.93228 1.14716 1.20999 0.98864 0.98959 0.90744 1.20464 0.96603 1.02202 0.96096 1.19911 0.94551 0.96270 0.84467 1.86923 1.63464 1.45336 1.24582 0.89483 0.89280 0.88410 0.86870 0.91995 0.94317 0.89994 0.94099 0.96926 0.80214 0.93167 0.83287 0.86968 0.82897 0.82261 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 9.89 127.77 1.26 1.61 16 2 N -0.60 -10.79 2.87 -846.76 -2.43 -13.22 16 3 C 0.12 2.85 5.41 86.38 0.47 3.32 16 4 C -0.13 -3.71 5.65 30.60 0.17 -3.54 16 5 C 0.16 6.08 6.26 86.38 0.54 6.62 16 6 N -0.76 -37.29 5.41 -343.46 -1.86 -39.14 16 7 C -0.24 -14.34 10.47 84.03 0.88 -13.46 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 9 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 10 N -0.98 -64.27 13.97 21.65 0.30 -63.97 16 11 Si 0.96 46.65 27.74 68.60 1.90 48.55 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 14 H -0.26 -11.78 6.52 99.48 0.65 -11.13 16 15 C 0.48 11.33 6.93 87.66 0.61 11.93 16 16 O -0.58 -20.50 16.03 15.16 0.24 -20.26 16 17 C 0.07 1.00 3.17 30.43 0.10 1.09 16 18 H 0.19 1.03 7.94 -2.39 -0.02 1.01 16 19 C -0.09 -0.97 5.38 30.73 0.17 -0.81 16 20 C -0.17 -3.22 6.26 -19.53 -0.12 -3.35 16 21 C -0.07 -1.23 9.82 22.20 0.22 -1.01 16 22 C -0.07 -1.49 6.33 22.35 0.14 -1.35 16 23 Cl -0.06 -1.23 28.97 -2.72 -0.08 -1.31 16 24 C -0.08 -1.49 9.81 22.23 0.22 -1.27 16 25 C -0.13 -2.88 10.06 22.45 0.23 -2.66 16 26 C 0.09 2.13 6.83 22.67 0.15 2.28 16 27 O -0.29 -6.55 10.43 -77.13 -0.80 -7.36 16 28 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 30 H 0.10 0.18 4.72 -2.39 -0.01 0.16 16 31 H 0.11 1.92 8.07 -2.39 -0.02 1.90 16 32 H 0.06 1.76 7.42 -2.39 -0.02 1.74 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.36 17.06 5.53 -92.70 -0.51 16.55 16 38 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 1.03 6.59 -2.39 -0.02 1.02 16 41 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -85.31 371.64 3.24 -82.07 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.47 Total: 18.50 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.50 Total: -3.87 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -3.99 Total: -116.33 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.56 Total: -27.62 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.55 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -85.31 3.24 -82.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723068438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.203 kcal (2) G-P(sol) polarization free energy of solvation -85.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds