Wall clock time and date at job start Tue Mar 31 2020 21:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35715 * 116.99674 * 2 1 4 4 C 1.39052 * 119.90074 * 0.02562 * 3 2 1 5 5 C 1.37649 * 120.12210 * 179.71873 * 4 3 2 6 6 C 1.39774 * 119.92528 * 0.52976 * 5 4 3 7 7 C 1.47535 * 120.10376 * 179.74400 * 6 5 4 8 8 O 1.21586 * 120.00131 * 179.72467 * 7 6 5 9 9 N 1.34780 * 119.99462 * 359.73021 * 7 6 5 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 6 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 10 9 13 13 C 1.52994 * 113.66220 * 139.93548 * 12 11 10 14 14 N 1.46498 * 109.47402 * 87.44478 * 13 12 11 15 15 C 1.36937 * 120.00198 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47203 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47103 * 120.00336 * 19 17 15 22 22 H 1.48503 * 109.46916 * 239.99992 * 19 17 15 23 23 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 24 24 C 1.39860 * 119.79998 * 359.47102 * 6 5 4 25 25 Cl 1.73603 * 120.06009 * 180.27287 * 24 6 5 26 26 C 1.37886 * 119.87302 * 0.25234 * 24 6 5 27 27 H 1.08999 * 109.46990 * 59.99952 * 1 2 3 28 28 H 1.08997 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47449 * 299.99576 * 1 2 3 30 30 H 1.07998 * 119.93775 * 359.97438 * 4 3 2 31 31 H 1.08001 * 120.03706 * 180.27862 * 5 4 3 32 32 H 0.96995 * 120.00200 * 359.97438 * 9 7 6 33 33 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 34 34 H 1.08993 * 113.61491 * 203.74894 * 11 10 9 35 35 H 1.09000 * 113.61138 * 334.65232 * 11 10 9 36 36 H 1.09002 * 113.61454 * 270.79954 * 12 11 10 37 37 H 1.09005 * 109.46709 * 207.43538 * 13 12 11 38 38 H 1.08998 * 109.47556 * 327.43829 * 13 12 11 39 39 H 0.97001 * 120.00130 * 359.97438 * 14 13 12 40 40 H 0.97001 * 120.00336 * 179.97438 * 18 17 15 41 41 H 1.09001 * 113.61695 * 25.34675 * 23 10 9 42 42 H 1.08996 * 113.61580 * 156.16953 * 23 10 9 43 43 H 1.08005 * 119.96142 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2857 2.3741 0.0005 5 6 1.9057 3.6030 0.0064 6 6 3.3014 3.6798 0.0006 7 6 3.9701 4.9949 0.0011 8 8 5.1842 5.0596 0.0011 9 7 3.2349 6.1246 0.0017 10 6 3.8989 7.4305 0.0028 11 6 3.8353 8.1551 -1.3521 12 6 2.5096 8.7714 -0.8693 13 6 2.3403 10.2426 -1.2539 14 7 1.7353 10.3328 -2.5851 15 6 1.4861 11.5587 -3.1422 16 1 1.7351 12.4590 -2.6001 17 6 0.9133 11.6442 -4.4038 18 7 0.6093 10.5471 -5.0643 19 14 0.5740 13.3164 -5.1641 20 1 1.0037 14.3835 -4.2251 21 1 1.3279 13.4435 -6.4372 22 1 -0.8800 13.4515 -5.4342 23 6 3.0258 8.5650 0.5645 24 6 4.0621 2.5062 0.0001 25 17 5.7959 2.5938 0.0000 26 6 3.4324 1.2796 0.0000 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.2073 2.3145 0.0005 31 1 1.3146 4.5068 0.0113 32 1 2.2664 6.0730 0.0014 33 1 4.8999 7.3960 0.4329 34 1 4.6308 8.8866 -1.4939 35 1 3.7211 7.4824 -2.2021 36 1 1.6343 8.1678 -1.1095 37 1 1.6947 10.7360 -0.5273 38 1 3.3151 10.7300 -1.2640 39 1 1.5113 9.5243 -3.0719 40 1 0.2088 10.6068 -5.9457 41 1 2.2590 8.2227 1.2595 42 1 3.5996 9.4081 0.9489 43 1 4.0184 0.3724 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725071713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:45 Heat of formation + Delta-G solvation = -11.071433 kcal Electronic energy + Delta-G solvation = -25844.412598 eV Core-core repulsion = 21917.324700 eV Total energy + Delta-G solvation = -3927.087898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91171 -40.04172 -38.60949 -37.39243 -36.45531 -34.54056 -33.27669 -31.56470 -30.93422 -30.45776 -27.99138 -26.76045 -25.48872 -24.17989 -23.44082 -22.80427 -21.43303 -20.93758 -19.17519 -18.81676 -17.84084 -17.05929 -16.90513 -16.32357 -15.82126 -15.58180 -15.07930 -14.98336 -14.76704 -14.49914 -14.29045 -13.99786 -13.70933 -13.48904 -13.24577 -13.10215 -12.74232 -12.65759 -12.34886 -12.17013 -12.10778 -11.63721 -11.57196 -11.26991 -11.26679 -11.02787 -10.84004 -10.44246 -10.32215 -10.06561 -9.81684 -9.64909 -9.58843 -9.31781 -9.03397 -8.84750 -8.70881 -6.89116 -5.75268 -3.03265 0.41202 0.69494 1.78975 2.59053 2.75994 3.03435 3.41496 3.43776 3.49437 3.51684 4.12659 4.39086 4.48209 4.53017 4.58872 4.65315 4.70293 4.73020 4.83795 4.85466 4.98916 5.13185 5.16372 5.26756 5.46243 5.59275 5.65114 5.69046 5.77092 5.88298 5.90178 5.95652 6.03107 6.12200 6.26858 6.33270 6.44459 6.65517 6.74049 6.79799 6.95220 7.43583 7.71748 8.15919 8.44029 9.55089 10.14460 10.48796 11.47808 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.002255 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.143560 B =12412.899641 C =13597.987180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.165 3.835 4 C -0.214 4.214 5 C -0.031 4.031 6 C -0.167 4.167 7 C 0.558 3.442 8 O -0.517 6.517 9 N -0.705 5.705 10 C 0.118 3.882 11 C -0.138 4.138 12 C -0.113 4.113 13 C 0.162 3.838 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.138 4.138 24 C 0.054 3.946 25 Cl -0.020 7.020 26 C -0.158 4.158 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.398 0.602 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -22.754 15.070 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.118 3.882 4 C -0.232 4.232 5 C -0.050 4.050 6 C -0.171 4.171 7 C 0.345 3.655 8 O -0.394 6.394 9 N -0.357 5.357 10 C 0.013 3.987 11 C -0.177 4.177 12 C -0.132 4.132 13 C 0.035 3.965 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.176 4.176 24 C 0.026 3.974 25 Cl 0.010 6.990 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.233 0.767 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.407 -22.696 15.058 27.343 hybrid contribution -1.089 0.755 -0.786 1.541 sum 1.318 -21.941 14.272 26.207 Atomic orbital electron populations 1.23195 0.77427 1.04577 1.01950 1.86056 1.22143 1.26367 1.87678 1.19016 0.91633 0.84581 0.92934 1.21279 1.00873 0.91781 1.09298 1.21093 0.92503 0.98060 0.93294 1.19698 0.93435 0.93156 1.10822 1.17911 0.87089 0.83555 0.76917 1.90870 1.12841 1.87043 1.48607 1.45576 1.09876 1.05149 1.75102 1.21934 0.97260 0.81126 0.98346 1.23443 0.98371 0.99329 0.96560 1.22790 0.97354 0.98496 0.94560 1.20639 0.95824 0.91747 0.88336 1.42358 1.73954 1.06134 1.15154 1.19294 1.33221 0.85651 0.98681 0.91185 1.24739 1.02048 0.96968 0.97415 1.69667 1.48901 1.25853 1.13882 0.86125 0.77517 0.83532 0.79090 1.20574 1.21883 1.21918 1.23309 0.99291 0.97802 0.97219 1.20642 0.86900 0.92603 0.97288 1.98436 1.06320 1.98486 1.95785 1.20176 0.91758 0.97415 1.08405 0.91998 0.87742 0.92114 0.84080 0.84232 0.76664 0.88170 0.89093 0.91280 0.89534 0.96426 0.96181 0.78353 0.93628 0.91314 0.88647 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.38 10.48 -18.85 -0.20 -2.58 16 3 C 0.17 1.41 6.69 -39.03 -0.26 1.15 16 4 C -0.21 -1.59 9.01 -39.49 -0.36 -1.94 16 5 C -0.03 -0.26 9.53 -39.22 -0.37 -0.63 16 6 C -0.17 -1.87 5.88 -104.93 -0.62 -2.48 16 7 C 0.56 7.37 7.76 -12.47 -0.10 7.27 16 8 O -0.52 -8.38 13.57 5.29 0.07 -8.31 16 9 N -0.71 -8.12 5.21 -54.06 -0.28 -8.41 16 10 C 0.12 1.49 4.29 -67.12 -0.29 1.21 16 11 C -0.14 -2.07 7.45 -25.82 -0.19 -2.26 16 12 C -0.11 -1.72 3.64 -89.71 -0.33 -2.05 16 13 C 0.16 3.20 6.10 -4.05 -0.02 3.18 16 14 N -0.73 -18.57 5.60 -59.91 -0.34 -18.91 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 19 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C -0.14 -1.63 7.38 -25.92 -0.19 -1.82 16 24 C 0.05 0.61 6.35 -39.10 -0.25 0.36 16 25 Cl -0.02 -0.25 26.01 -51.86 -1.35 -1.60 16 26 C -0.16 -1.50 9.75 -39.46 -0.38 -1.88 16 27 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 30 H 0.14 0.68 6.27 -52.49 -0.33 0.35 16 31 H 0.14 0.85 6.40 -52.49 -0.34 0.52 16 32 H 0.40 3.66 6.73 -40.82 -0.27 3.38 16 33 H 0.10 1.34 7.50 -51.93 -0.39 0.95 16 34 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 39 H 0.38 10.21 7.67 -40.82 -0.31 9.89 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -34.18 372.57 -9.15 -43.33 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.76 Total: 7.22 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.62 Total: -6.22 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.11 Total: -54.99 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.13 Total: -10.88 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.35 Total: -1.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.18 -9.15 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725071713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.262 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds