Wall clock time and date at job start Tue Mar 31 2020 20:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99803 * 2 1 4 4 H 1.08002 * 119.99851 * 204.82190 * 3 2 1 5 5 C 1.38809 * 120.00113 * 24.82872 * 3 2 1 6 6 N 1.31620 * 120.00153 * 5.94621 * 5 3 2 7 7 Si 1.86801 * 120.00044 * 185.94876 * 5 3 2 8 8 H 1.48502 * 109.47129 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47258 * 119.99987 * 7 5 3 10 10 H 1.48499 * 109.47409 * 239.99770 * 7 5 3 11 11 C 1.46499 * 120.00172 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46938 * 269.99714 * 11 2 1 13 13 H 1.08999 * 109.47035 * 60.00013 * 12 11 2 14 14 O 1.42895 * 109.46995 * 299.99853 * 12 11 2 15 15 C 1.53004 * 109.47072 * 179.97438 * 12 11 2 16 16 N 1.46506 * 109.46726 * 184.99953 * 15 12 11 17 17 C 1.46493 * 119.99783 * 269.99625 * 16 15 12 18 18 C 1.34773 * 120.00007 * 90.00503 * 16 15 12 19 19 O 1.21759 * 120.00089 * 3.36616 * 18 16 15 20 20 C 1.46256 * 120.00080 * 183.37327 * 18 16 15 21 21 C 1.33482 * 122.20869 * 337.61460 * 20 18 16 22 22 S 1.75719 * 109.85770 * 179.97438 * 21 20 18 23 23 C 1.75940 * 91.05677 * 359.97438 * 22 21 20 24 24 C 1.36288 * 142.80322 * 179.97438 * 23 22 21 25 25 N 1.33743 * 107.82011 * 180.02562 * 24 23 22 26 26 C 1.30354 * 109.45899 * 359.97438 * 25 24 23 27 27 N 1.35927 * 109.82060 * 359.97438 * 23 22 21 28 28 H 1.09006 * 109.46720 * 275.01583 * 1 2 3 29 29 H 1.08997 * 109.47279 * 35.01446 * 1 2 3 30 30 H 1.08999 * 109.47030 * 155.02107 * 1 2 3 31 31 H 0.97001 * 120.00106 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47247 * 149.99858 * 11 2 1 33 33 H 1.09006 * 109.47202 * 29.99113 * 11 2 1 34 34 H 0.96697 * 114.00109 * 299.99691 * 14 12 11 35 35 H 1.08992 * 109.46892 * 65.00213 * 15 12 11 36 36 H 1.08997 * 109.46661 * 304.99608 * 15 12 11 37 37 H 1.08999 * 109.47627 * 265.08558 * 17 16 15 38 38 H 1.09004 * 109.47281 * 25.08385 * 17 16 15 39 39 H 1.08994 * 109.47181 * 145.08518 * 17 16 15 40 40 H 1.07999 * 125.06766 * 0.02562 * 21 20 18 41 41 H 1.08010 * 126.09114 * 0.06838 * 24 23 22 42 42 H 1.08002 * 125.57076 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2291 -0.3927 5 6 1.5518 2.3325 0.5048 6 7 0.3749 2.2582 1.0893 7 14 2.4176 3.9809 0.3544 8 1 3.7183 3.7956 -0.3378 9 1 1.5692 4.9162 -0.4271 10 1 2.6539 4.5414 1.7091 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 1 1.5002 -1.8415 1.9555 14 8 3.2249 -0.7153 2.1157 15 6 3.2171 -3.0363 1.4412 16 7 3.3570 -3.5198 2.8171 17 6 4.5218 -3.1301 3.6155 18 6 2.4142 -4.3232 3.3481 19 8 1.4778 -4.6970 2.6654 20 6 2.5158 -4.7461 4.7445 21 6 3.6767 -4.7526 5.4033 22 16 3.4258 -5.3145 7.0492 23 6 1.7037 -5.5182 6.7519 24 6 0.5384 -5.9060 7.3427 25 7 -0.4384 -5.7895 6.4367 26 6 0.0596 -5.3494 5.3153 27 7 1.4120 -5.1648 5.4722 28 1 -0.3633 0.0899 1.0238 29 1 -0.3634 0.8416 -0.5896 30 1 -0.3633 -0.9315 -0.4340 31 1 -0.0430 3.0595 1.4417 32 1 3.1499 -1.1381 -0.5144 33 1 1.6084 -2.0282 -0.5146 34 1 4.0873 -0.5467 1.7123 35 1 4.2053 -2.8855 1.0068 36 1 2.6693 -3.7714 0.8517 37 1 5.2880 -3.9018 3.5410 38 1 4.9192 -2.1864 3.2418 39 1 4.2250 -3.0123 4.6576 40 1 4.6280 -4.4559 4.9870 41 1 0.4240 -6.2461 8.3615 42 1 -0.4994 -5.1612 4.4106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734540822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:41 Heat of formation + Delta-G solvation = 49.855104 kcal Electronic energy + Delta-G solvation = -27387.658001 eV Core-core repulsion = 23497.548533 eV Total energy + Delta-G solvation = -3890.109468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.85702 -41.33450 -38.94170 -37.54123 -36.95882 -36.05301 -33.32396 -32.33441 -30.77608 -30.53840 -28.39351 -27.99793 -27.42893 -25.29221 -24.16301 -23.12885 -22.32272 -22.13320 -20.93760 -19.38127 -18.81029 -18.25048 -17.69635 -17.40094 -16.93252 -16.74481 -16.34662 -16.23789 -16.19996 -15.67755 -15.46073 -15.30494 -15.10856 -14.74954 -14.61100 -14.39570 -14.07943 -13.72721 -13.23268 -13.09820 -12.91198 -12.81843 -12.66762 -12.53124 -12.42870 -12.17631 -12.04573 -11.90487 -11.78223 -11.54220 -11.35906 -11.32896 -11.09200 -10.60245 -10.52573 -9.76028 -8.69000 -8.50235 -7.75769 -5.24881 -0.57142 -0.00401 0.38299 0.58638 1.12134 1.48563 1.48615 1.58908 1.71119 1.89268 1.99622 2.55026 3.14622 3.40838 3.49891 3.56259 3.57667 3.79909 3.88196 4.01187 4.05790 4.16255 4.19377 4.33586 4.47255 4.54092 4.55693 4.72303 4.75518 4.81153 4.86333 4.95163 5.19499 5.27295 5.30537 5.36089 5.65896 5.71530 5.77134 6.09209 6.37753 6.63484 6.78173 7.11367 7.21142 7.90164 8.36736 9.29555 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.002883 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.323262 B = 9709.481324 C = 9955.533921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.611 5.611 3 C -0.235 4.235 4 H 0.081 0.919 5 C -0.060 4.060 6 N -0.948 5.948 7 Si 0.969 3.031 8 H -0.256 1.256 9 H -0.300 1.300 10 H -0.300 1.300 11 C 0.120 3.880 12 C 0.088 3.912 13 H 0.037 0.963 14 O -0.555 6.555 15 C 0.095 3.905 16 N -0.581 5.581 17 C 0.042 3.958 18 C 0.564 3.436 19 O -0.573 6.573 20 C -0.005 4.005 21 C -0.158 4.158 22 S 0.238 5.762 23 C -0.124 4.124 24 C 0.008 3.992 25 N -0.476 5.476 26 C 0.186 3.814 27 N -0.392 5.392 28 H -0.008 1.008 29 H 0.019 0.981 30 H 0.022 0.978 31 H 0.241 0.759 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.376 0.624 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.256 0.744 41 H 0.211 0.789 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.953 -17.611 9.908 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.333 5.333 3 C -0.365 4.365 4 H 0.099 0.901 5 C -0.253 4.253 6 N -0.596 5.596 7 Si 0.798 3.202 8 H -0.180 1.180 9 H -0.227 1.227 10 H -0.227 1.227 11 C -0.007 4.007 12 C 0.024 3.976 13 H 0.055 0.945 14 O -0.361 6.361 15 C -0.028 4.028 16 N -0.311 5.311 17 C -0.099 4.099 18 C 0.351 3.649 19 O -0.454 6.454 20 C -0.119 4.119 21 C -0.297 4.297 22 S 0.498 5.502 23 C -0.348 4.348 24 C -0.150 4.150 25 N -0.191 5.191 26 C -0.096 4.096 27 N -0.070 5.070 28 H 0.010 0.990 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.272 0.728 41 H 0.228 0.772 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 14.956 -18.010 11.136 25.924 hybrid contribution -0.455 1.564 -1.596 2.281 sum 14.501 -16.446 9.540 23.911 Atomic orbital electron populations 1.20497 0.83644 0.95482 0.96946 1.44066 1.01610 1.02003 1.85613 1.19498 0.99205 0.86299 1.31547 0.90086 1.25881 0.98185 1.02221 0.99047 1.70276 1.18078 1.27341 1.43930 0.85166 0.78506 0.80070 0.76451 1.18019 1.22748 1.22726 1.21682 0.97363 0.87437 0.94239 1.22754 0.92833 0.86596 0.95369 0.94515 1.86666 1.33432 1.60425 1.55571 1.22383 1.03591 0.95386 0.81458 1.47545 1.22666 1.45839 1.15065 1.22940 0.86702 1.03620 0.96626 1.17298 0.82941 0.79569 0.85136 1.90855 1.34180 1.57965 1.62374 1.18695 0.86768 1.11504 0.94918 1.27605 1.02570 1.00983 0.98576 1.84287 0.90390 1.68550 1.06935 1.25122 1.03832 1.16119 0.89708 1.22362 0.84598 1.06948 1.01102 1.70182 1.31470 1.17342 1.00149 1.25474 0.78589 1.05424 1.00115 1.43936 1.08112 1.45199 1.09790 0.99001 0.96199 0.95959 0.94993 0.90660 0.92518 0.77624 0.85370 0.89640 0.87302 0.88300 0.89532 0.72810 0.77249 0.77325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.42 9.00 127.77 1.15 10.57 16 2 N -0.61 -30.11 2.87 -726.93 -2.09 -32.20 16 3 C -0.24 -12.36 9.02 84.03 0.76 -11.60 16 4 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 5 C -0.06 -3.35 5.23 84.86 0.44 -2.91 16 6 N -0.95 -58.22 10.46 21.65 0.23 -58.00 16 7 Si 0.97 44.99 29.56 68.60 2.03 47.01 16 8 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 11 C 0.12 4.38 5.43 86.38 0.47 4.85 16 12 C 0.09 2.98 3.48 30.60 0.11 3.08 16 13 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 14 O -0.56 -19.58 11.53 -148.98 -1.72 -21.30 16 15 C 0.09 2.17 5.07 86.38 0.44 2.61 16 16 N -0.58 -12.50 2.84 -851.97 -2.42 -14.92 16 17 C 0.04 0.46 8.49 127.77 1.08 1.55 16 18 C 0.56 15.85 7.58 86.33 0.65 16.50 16 19 O -0.57 -20.85 15.97 -4.54 -0.07 -20.92 16 20 C 0.00 -0.12 6.46 39.07 0.25 0.13 16 21 C -0.16 -2.18 8.66 66.74 0.58 -1.60 16 22 S 0.24 3.16 23.33 -56.49 -1.32 1.84 16 23 C -0.12 -2.86 7.81 83.60 0.65 -2.21 16 24 C 0.01 0.19 11.93 83.95 1.00 1.19 16 25 N -0.48 -14.42 11.21 -197.66 -2.22 -16.64 16 26 C 0.19 5.80 12.51 179.54 2.25 8.04 16 27 N -0.39 -10.95 3.20 -345.00 -1.10 -12.05 16 28 H -0.01 -0.50 7.35 -2.38 -0.02 -0.51 16 29 H 0.02 1.10 7.26 -2.39 -0.02 1.08 16 30 H 0.02 1.01 7.84 -2.39 -0.02 0.99 16 31 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 33 H 0.06 1.95 7.86 -2.38 -0.02 1.93 16 34 H 0.38 9.84 9.04 -74.06 -0.67 9.17 16 35 H 0.13 1.83 8.07 -2.39 -0.02 1.81 16 36 H 0.09 2.16 7.38 -2.39 -0.02 2.14 16 37 H 0.11 0.28 7.22 -2.39 -0.02 0.26 16 38 H 0.10 1.05 7.22 -2.39 -0.02 1.03 16 39 H 0.09 0.93 5.14 -2.39 -0.01 0.92 16 40 H 0.26 1.21 4.26 -2.91 -0.01 1.20 16 41 H 0.21 3.46 8.06 -2.91 -0.02 3.43 16 42 H 0.21 6.48 7.92 -2.91 -0.02 6.45 16 Total: -1.00 -84.05 359.88 1.56 -82.49 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.40 Total: 14.47 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 9.83 Total: 30.22 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -7.60 Total: -133.81 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.79 Total: -42.22 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.32 Total: 1.84 kcal Total: -84.05 1.56 -82.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734540822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.348 kcal (2) G-P(sol) polarization free energy of solvation -84.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds