Wall clock time and date at job start Tue Mar 31 2020 20:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99760 * 2 1 4 4 O 1.21576 * 120.00356 * 176.68051 * 3 2 1 5 5 C 1.47692 * 119.99737 * 356.96114 * 3 2 1 6 6 C 1.39482 * 122.10386 * 186.48921 * 5 3 2 7 7 C 1.35000 * 111.68569 * 179.97438 * 6 5 3 8 8 S 1.71761 * 105.45004 * 0.02562 * 7 6 5 9 9 N 1.30608 * 122.10280 * 6.20062 * 5 3 2 10 10 C 1.46492 * 120.00517 * 179.97438 * 2 1 3 11 11 C 1.53787 * 113.61513 * 31.66078 * 10 2 1 12 12 C 1.54053 * 86.97958 * 270.83595 * 11 10 2 13 13 N 1.46900 * 113.69313 * 220.00426 * 12 11 10 14 14 C 1.46897 * 111.00268 * 252.53708 * 13 12 11 15 15 C 1.50707 * 109.47031 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00242 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00013 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99984 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00428 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99517 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00471 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47147 * 89.99584 * 22 20 18 24 24 H 1.48500 * 109.47018 * 209.99529 * 22 20 18 25 25 H 1.48500 * 109.46635 * 329.99692 * 22 20 18 26 26 C 1.53776 * 87.08142 * 334.56395 * 12 11 10 27 27 H 1.08992 * 109.47634 * 35.80124 * 1 2 3 28 28 H 1.09008 * 109.46851 * 155.80537 * 1 2 3 29 29 H 1.09003 * 109.47005 * 275.79747 * 1 2 3 30 30 H 1.08007 * 124.15914 * 0.02562 * 6 5 3 31 31 H 1.08004 * 127.27098 * 180.02562 * 7 6 5 32 32 H 1.09004 * 112.84994 * 162.84948 * 10 2 1 33 33 H 1.09004 * 113.61051 * 25.42660 * 11 10 2 34 34 H 1.08994 * 113.61608 * 156.33467 * 11 10 2 35 35 H 1.08999 * 113.61390 * 89.11700 * 12 11 10 36 36 H 1.00902 * 110.99889 * 128.58338 * 13 12 11 37 37 H 1.09003 * 109.46756 * 299.99540 * 14 13 12 38 38 H 1.08996 * 109.47313 * 60.00189 * 14 13 12 39 39 H 0.97001 * 119.99858 * 0.02562 * 17 15 14 40 40 H 0.97003 * 119.99461 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.61669 * 270.88288 * 26 12 11 42 42 H 1.09000 * 113.61401 * 139.97329 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3530 1.1683 0.0610 5 6 1.4018 2.4454 -0.0678 6 6 2.0539 3.6708 -0.2041 7 6 1.1802 4.6991 -0.2445 8 16 -0.3750 3.9839 -0.1031 9 7 0.0981 2.4988 -0.0095 10 6 2.1975 -1.2686 0.0006 11 6 1.4670 -2.4022 -0.7385 12 6 0.7894 -2.7316 0.6052 13 7 0.6615 -4.1718 0.8644 14 6 -0.7342 -4.6094 0.7281 15 6 -0.8258 -6.0886 1.0012 16 8 0.1732 -6.7167 1.2815 17 7 -2.0181 -6.7137 0.9342 18 6 -2.1014 -8.0594 1.1821 19 1 -1.2116 -8.6188 1.4309 20 6 -3.3303 -8.7040 1.1125 21 7 -4.4129 -8.0234 0.8094 22 14 -3.4440 -10.5375 1.4511 23 1 -3.6895 -10.7593 2.8987 24 1 -4.5622 -11.1177 0.6648 25 1 -2.1706 -11.1931 1.0588 26 6 2.0084 -2.0887 1.2876 27 1 -0.3634 0.8334 -0.6011 28 1 -0.3633 -0.9375 -0.4212 29 1 -0.3633 0.1038 1.0224 30 1 3.1261 3.7832 -0.2701 31 1 1.4105 5.7495 -0.3446 32 1 3.2404 -1.1553 -0.2957 33 1 0.7748 -2.0498 -1.5033 34 1 2.1309 -3.1887 -1.0971 35 1 -0.1406 -2.1876 0.7701 36 1 1.0277 -4.4094 1.7742 37 1 -1.3557 -4.0692 1.4423 38 1 -1.0820 -4.4043 -0.2844 39 1 -2.8170 -6.2115 0.7097 40 1 -5.2708 -8.4735 0.7604 41 1 2.8201 -2.7897 1.4820 42 1 1.7531 -1.4834 2.1574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734596311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:27 Heat of formation + Delta-G solvation = 25.974064 kcal Electronic energy + Delta-G solvation = -25991.794362 eV Core-core repulsion = 22100.649335 eV Total energy + Delta-G solvation = -3891.145027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20981 -39.72545 -38.30637 -37.85121 -35.14791 -33.97713 -32.98581 -31.80720 -31.18430 -27.70822 -27.42167 -26.49866 -25.65621 -24.27551 -23.06882 -21.68058 -20.27393 -19.38103 -19.05835 -18.74616 -17.86681 -17.56459 -16.64494 -16.17327 -16.07237 -15.25538 -15.22812 -14.86890 -14.63885 -14.46678 -14.12022 -13.96072 -13.75597 -13.52316 -13.34930 -13.27552 -12.99439 -12.32331 -12.15793 -12.02016 -11.91387 -11.67604 -11.55937 -11.36395 -11.05348 -11.01509 -10.70944 -10.42454 -10.38474 -10.34533 -10.20536 -10.04198 -9.50579 -9.32112 -8.83953 -8.43561 -8.05642 -7.95237 -6.41350 -3.82044 0.11297 0.99143 1.34534 1.35627 2.63273 2.85612 3.18183 3.26763 3.33010 3.91586 4.08676 4.12203 4.33632 4.38639 4.45817 4.53839 4.76886 4.83572 4.98947 5.00192 5.06349 5.21049 5.27178 5.33248 5.40217 5.45290 5.68494 5.73432 5.75383 5.79431 5.80001 5.86883 5.91250 6.02798 6.10289 6.27189 6.47446 7.04541 7.28497 7.55706 7.67333 7.77806 8.06957 8.61879 9.18441 9.54904 10.06459 10.76417 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.001891 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.877922 B =14806.373517 C =15788.959978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.576 5.576 3 C 0.590 3.410 4 O -0.530 6.530 5 C 0.051 3.949 6 C -0.134 4.134 7 C -0.279 4.279 8 S 0.451 5.549 9 N -0.508 5.508 10 C 0.117 3.883 11 C -0.132 4.132 12 C 0.053 3.947 13 N -0.656 5.656 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.150 4.150 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.351 0.649 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.102 0.898 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 28.646 -3.224 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.308 5.308 3 C 0.373 3.627 4 O -0.405 6.405 5 C -0.123 4.123 6 C -0.166 4.166 7 C -0.428 4.428 8 S 0.607 5.393 9 N -0.343 5.343 10 C 0.012 3.988 11 C -0.171 4.171 12 C -0.057 4.057 13 N -0.288 5.288 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.189 4.189 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.189 0.811 31 H 0.204 0.796 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.172 0.828 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.466 27.678 -3.520 28.431 hybrid contribution 0.689 -0.180 0.756 1.038 sum 6.155 27.498 -2.764 28.313 Atomic orbital electron populations 1.22508 0.78362 1.04076 1.03023 1.47393 1.07671 1.04753 1.70940 1.17287 0.86267 0.82017 0.77126 1.90808 1.12737 1.86536 1.50449 1.21155 0.87897 0.96475 1.06735 1.21403 1.03348 0.89371 1.02502 1.27198 1.01105 1.05548 1.08926 1.80798 1.09993 0.92667 1.55826 1.72986 1.16701 1.21067 1.23529 1.21927 0.97170 0.81811 0.97855 1.23530 0.99899 0.96706 0.96942 1.23379 0.96953 0.88725 0.96672 1.60197 1.18427 1.12310 1.37869 1.21735 0.89598 0.95393 1.01566 1.19832 0.84422 0.88416 0.84717 1.90521 1.35701 1.67094 1.53392 1.41869 1.07646 1.09391 1.61194 1.19704 0.95279 0.83762 1.44082 0.87927 1.25267 0.94851 1.00539 0.97365 1.69618 0.99110 1.36910 1.48736 0.85850 0.78024 0.82094 0.78284 1.20445 1.20928 1.19399 1.23633 0.99245 0.98878 0.97140 0.87956 0.90244 0.92397 0.81063 0.79618 0.87216 0.91136 0.87521 0.90592 0.82845 0.93962 0.89683 0.77481 0.91899 0.87961 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 7.93 59.84 0.47 1.08 16 2 N -0.58 -6.40 3.08 -174.17 -0.54 -6.94 16 3 C 0.59 7.18 7.66 -12.40 -0.09 7.08 16 4 O -0.53 -7.76 16.22 5.30 0.09 -7.67 16 5 C 0.05 0.51 6.51 -84.06 -0.55 -0.04 16 6 C -0.13 -1.05 9.98 -40.27 -0.40 -1.45 16 7 C -0.28 -1.43 11.41 29.58 0.34 -1.09 16 8 S 0.45 2.44 23.20 -107.50 -2.49 -0.05 16 9 N -0.51 -4.41 7.29 24.84 0.18 -4.23 16 10 C 0.12 1.31 4.38 -67.12 -0.29 1.02 16 11 C -0.13 -1.50 7.09 -25.77 -0.18 -1.68 16 12 C 0.05 0.65 3.48 -66.76 -0.23 0.42 16 13 N -0.66 -10.51 6.19 -106.98 -0.66 -11.17 16 14 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 15 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16 16 O -0.58 -15.94 15.78 5.55 0.09 -15.86 16 17 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.15 -1.70 7.39 -25.92 -0.19 -1.89 16 27 H 0.10 0.94 5.22 -51.93 -0.27 0.67 16 28 H 0.08 0.73 4.66 -51.92 -0.24 0.48 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.17 1.25 8.00 -52.48 -0.42 0.83 16 31 H 0.19 0.39 8.06 -52.48 -0.42 -0.03 16 32 H 0.11 1.31 7.36 -51.93 -0.38 0.93 16 33 H 0.07 0.76 7.08 -51.93 -0.37 0.39 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 0.88 5.48 -51.93 -0.28 0.60 16 36 H 0.35 5.86 8.24 -39.29 -0.32 5.54 16 37 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -33.49 362.11 -8.81 -42.30 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.08 Total: 13.73 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.49 Total: 6.62 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.35 Total: -60.65 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.49 Total: -0.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.49 -8.81 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734596311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.270 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds