Wall clock time and date at job start Tue Mar 31 2020 20:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99760 * 2 1 4 4 O 1.21576 * 120.00356 * 176.68051 * 3 2 1 5 5 C 1.47692 * 119.99737 * 356.96114 * 3 2 1 6 6 C 1.39482 * 122.10386 * 186.48921 * 5 3 2 7 7 C 1.35000 * 111.68569 * 179.97438 * 6 5 3 8 8 S 1.71761 * 105.45004 * 0.02562 * 7 6 5 9 9 N 1.30608 * 122.10280 * 6.20062 * 5 3 2 10 10 C 1.46492 * 120.00517 * 179.97438 * 2 1 3 11 11 C 1.53787 * 113.61513 * 31.66078 * 10 2 1 12 12 C 1.54053 * 86.97958 * 270.83595 * 11 10 2 13 13 N 1.46900 * 113.69313 * 220.00426 * 12 11 10 14 14 C 1.46897 * 111.00268 * 252.53708 * 13 12 11 15 15 C 1.50707 * 109.47031 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00242 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00013 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99984 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00428 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99517 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00471 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47147 * 89.99584 * 22 20 18 24 24 H 1.48500 * 109.47018 * 209.99529 * 22 20 18 25 25 H 1.48500 * 109.46635 * 329.99692 * 22 20 18 26 26 C 1.53776 * 87.08142 * 334.56395 * 12 11 10 27 27 H 1.08992 * 109.47634 * 35.80124 * 1 2 3 28 28 H 1.09008 * 109.46851 * 155.80537 * 1 2 3 29 29 H 1.09003 * 109.47005 * 275.79747 * 1 2 3 30 30 H 1.08007 * 124.15914 * 0.02562 * 6 5 3 31 31 H 1.08004 * 127.27098 * 180.02562 * 7 6 5 32 32 H 1.09004 * 112.84994 * 162.84948 * 10 2 1 33 33 H 1.09004 * 113.61051 * 25.42660 * 11 10 2 34 34 H 1.08994 * 113.61608 * 156.33467 * 11 10 2 35 35 H 1.08999 * 113.61390 * 89.11700 * 12 11 10 36 36 H 1.00902 * 110.99889 * 128.58338 * 13 12 11 37 37 H 1.09003 * 109.46756 * 299.99540 * 14 13 12 38 38 H 1.08996 * 109.47313 * 60.00189 * 14 13 12 39 39 H 0.97001 * 119.99858 * 0.02562 * 17 15 14 40 40 H 0.97003 * 119.99461 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.61669 * 270.88288 * 26 12 11 42 42 H 1.09000 * 113.61401 * 139.97329 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3530 1.1683 0.0610 5 6 1.4018 2.4454 -0.0678 6 6 2.0539 3.6708 -0.2041 7 6 1.1802 4.6991 -0.2445 8 16 -0.3750 3.9839 -0.1031 9 7 0.0981 2.4988 -0.0095 10 6 2.1975 -1.2686 0.0006 11 6 1.4670 -2.4022 -0.7385 12 6 0.7894 -2.7316 0.6052 13 7 0.6615 -4.1718 0.8644 14 6 -0.7342 -4.6094 0.7281 15 6 -0.8258 -6.0886 1.0012 16 8 0.1732 -6.7167 1.2815 17 7 -2.0181 -6.7137 0.9342 18 6 -2.1014 -8.0594 1.1821 19 1 -1.2116 -8.6188 1.4309 20 6 -3.3303 -8.7040 1.1125 21 7 -4.4129 -8.0234 0.8094 22 14 -3.4440 -10.5375 1.4511 23 1 -3.6895 -10.7593 2.8987 24 1 -4.5622 -11.1177 0.6648 25 1 -2.1706 -11.1931 1.0588 26 6 2.0084 -2.0887 1.2876 27 1 -0.3634 0.8334 -0.6011 28 1 -0.3633 -0.9375 -0.4212 29 1 -0.3633 0.1038 1.0224 30 1 3.1261 3.7832 -0.2701 31 1 1.4105 5.7495 -0.3446 32 1 3.2404 -1.1553 -0.2957 33 1 0.7748 -2.0498 -1.5033 34 1 2.1309 -3.1887 -1.0971 35 1 -0.1406 -2.1876 0.7701 36 1 1.0277 -4.4094 1.7742 37 1 -1.3557 -4.0692 1.4423 38 1 -1.0820 -4.4043 -0.2844 39 1 -2.8170 -6.2115 0.7097 40 1 -5.2708 -8.4735 0.7604 41 1 2.8201 -2.7897 1.4820 42 1 1.7531 -1.4834 2.1574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734596311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:26 Heat of formation + Delta-G solvation = 0.985551 kcal Electronic energy + Delta-G solvation = -25992.877946 eV Core-core repulsion = 22100.649335 eV Total energy + Delta-G solvation = -3892.228610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.01973 -40.59790 -39.96674 -38.88393 -36.33131 -35.81577 -34.18524 -33.22916 -32.39795 -28.82553 -28.33103 -27.61318 -26.72055 -25.88712 -24.01182 -22.49845 -21.20434 -20.91797 -20.02055 -19.81768 -19.43376 -18.33879 -17.84707 -17.36377 -16.99350 -16.82469 -16.41019 -16.18453 -15.97281 -15.60294 -15.31553 -15.17290 -14.82260 -14.44167 -14.27260 -14.13368 -14.06647 -13.75870 -13.52671 -13.27610 -13.02597 -13.00965 -12.87787 -12.56312 -12.41560 -12.18732 -12.12217 -11.80184 -11.70123 -11.50812 -11.38747 -10.91571 -10.76473 -10.32790 -10.01618 -9.92986 -9.62661 -9.32136 -8.46839 -5.95452 -0.44952 0.54380 0.70996 0.81310 1.37888 1.41768 1.54582 1.83200 2.05108 2.05530 2.29194 2.94575 3.20450 3.35798 3.46257 3.55445 3.64233 3.80614 3.86125 4.07016 4.22701 4.28921 4.40081 4.46767 4.51456 4.55858 4.58433 4.67248 4.79905 4.82098 4.85787 4.89635 4.96327 5.05833 5.16533 5.23889 5.40968 5.57640 5.92509 6.14325 6.20401 6.38445 6.60186 6.91103 7.12582 7.56188 8.11634 8.70501 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.001891 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.877922 B =14806.373517 C =15788.959978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.576 5.576 3 C 0.582 3.418 4 O -0.567 6.567 5 C 0.027 3.973 6 C -0.155 4.155 7 C -0.262 4.262 8 S 0.516 5.484 9 N -0.534 5.534 10 C 0.120 3.880 11 C -0.124 4.124 12 C 0.056 3.944 13 N -0.668 5.668 14 C 0.065 3.935 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.143 4.143 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.169 0.831 31 H 0.220 0.780 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.345 0.655 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.100 0.900 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 30.562 -3.501 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.307 5.307 3 C 0.368 3.632 4 O -0.446 6.446 5 C -0.145 4.145 6 C -0.187 4.187 7 C -0.411 4.411 8 S 0.672 5.328 9 N -0.371 5.371 10 C 0.015 3.985 11 C -0.163 4.163 12 C -0.053 4.053 13 N -0.301 5.301 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.182 4.182 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.186 0.814 31 H 0.237 0.763 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.165 0.835 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.892 29.621 -3.809 30.118 hybrid contribution 1.119 -0.622 0.836 1.529 sum 5.012 28.999 -2.974 29.579 Atomic orbital electron populations 1.22566 0.77227 1.04586 1.03273 1.47472 1.08327 1.04400 1.70479 1.17723 0.86102 0.83053 0.76366 1.90771 1.14294 1.87238 1.52273 1.20948 0.88381 0.95916 1.09288 1.21449 1.03743 0.89537 1.03999 1.27587 1.00442 1.06614 1.06460 1.80556 1.08838 0.90303 1.53085 1.72660 1.16243 1.24093 1.24144 1.21809 0.96868 0.82109 0.97707 1.23450 0.99759 0.96347 0.96776 1.23472 0.97900 0.86658 0.97316 1.60207 1.17426 1.14752 1.37697 1.21602 0.91152 0.90796 1.03189 1.20911 0.83151 0.90831 0.82647 1.90490 1.36932 1.68858 1.54755 1.41933 1.08492 1.08837 1.61763 1.19660 0.95102 0.85233 1.46357 0.90395 1.26042 0.94139 1.04643 0.96513 1.69674 0.99480 1.38451 1.48441 0.84927 0.77982 0.76895 0.78528 1.19615 1.19486 1.19880 1.23575 0.98784 0.98658 0.97206 0.87416 0.89769 0.92273 0.81393 0.76297 0.88234 0.90094 0.88331 0.89116 0.83493 0.91519 0.87807 0.76931 0.91288 0.88168 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 7.93 127.77 1.01 2.19 16 2 N -0.58 -12.61 3.08 -823.22 -2.53 -15.14 16 3 C 0.58 14.39 7.66 86.74 0.66 15.06 16 4 O -0.57 -17.31 16.22 -3.95 -0.06 -17.37 16 5 C 0.03 0.51 6.51 42.13 0.27 0.78 16 6 C -0.16 -2.28 9.98 21.82 0.22 -2.06 16 7 C -0.26 -1.95 11.41 67.07 0.77 -1.19 16 8 S 0.52 4.14 23.20 -56.49 -1.31 2.83 16 9 N -0.53 -8.43 7.29 -75.31 -0.55 -8.98 16 10 C 0.12 2.68 4.38 45.52 0.20 2.88 16 11 C -0.12 -2.73 7.09 31.22 0.22 -2.51 16 12 C 0.06 1.31 3.48 45.53 0.16 1.47 16 13 N -0.67 -20.90 6.19 -492.38 -3.05 -23.95 16 14 C 0.07 2.20 6.01 85.56 0.51 2.71 16 15 C 0.44 20.86 7.82 87.66 0.69 21.54 16 16 O -0.62 -34.89 15.78 -3.04 -0.05 -34.93 16 17 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 18 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 21 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 22 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 C -0.14 -3.19 7.39 31.12 0.23 -2.96 16 27 H 0.11 1.83 5.22 -2.39 -0.01 1.82 16 28 H 0.08 1.37 4.66 -2.38 -0.01 1.36 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.17 2.47 8.00 -2.91 -0.02 2.44 16 31 H 0.22 0.03 8.06 -2.91 -0.02 0.00 16 32 H 0.10 2.46 7.36 -2.38 -0.02 2.44 16 33 H 0.08 1.61 7.08 -2.38 -0.02 1.60 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.09 1.90 5.48 -2.39 -0.01 1.88 16 36 H 0.35 11.47 8.24 -89.69 -0.74 10.73 16 37 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 38 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 40 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -73.71 362.11 -1.02 -74.73 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.38 Total: 38.67 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.22 Total: 19.38 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -7.47 Total: -128.44 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.11 Total: -52.31 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.31 Total: 2.83 kcal Total: -73.71 -1.02 -74.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734596311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.711 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds