Wall clock time and date at job start Tue Mar 31 2020 20:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99858 * 2 1 4 4 C 1.53005 * 109.47138 * 90.00574 * 3 2 1 5 5 C 1.52999 * 109.46752 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46685 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00215 * 180.02562 * 6 5 4 8 8 O 1.21561 * 119.99501 * 359.97438 * 7 6 5 9 9 C 1.47820 * 120.00399 * 179.97438 * 7 6 5 10 10 C 1.39948 * 120.94208 * 179.97438 * 9 7 6 11 11 N 1.32147 * 118.92391 * 179.72965 * 10 9 7 12 12 C 1.31864 * 120.96882 * 0.25468 * 11 10 9 13 13 N 1.31867 * 122.09575 * 0.02562 * 12 11 10 14 14 C 1.32147 * 120.96831 * 359.97438 * 13 12 11 15 15 C 1.34780 * 120.00317 * 180.02562 * 2 1 3 16 16 O 1.21277 * 120.00523 * 180.02562 * 15 2 1 17 17 C 1.50703 * 119.99452 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.46915 * 180.02562 * 17 15 2 19 19 C 1.76192 * 100.00110 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00204 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00260 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47410 * 60.00299 * 23 21 19 25 25 H 1.48505 * 109.47123 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47271 * 299.99770 * 23 21 19 27 27 H 1.08995 * 109.47511 * 90.00183 * 1 2 3 28 28 H 1.09007 * 109.46710 * 210.00155 * 1 2 3 29 29 H 1.08999 * 109.46970 * 329.99746 * 1 2 3 30 30 H 1.08998 * 109.47105 * 330.00250 * 3 2 1 31 31 H 1.09009 * 109.46947 * 210.00090 * 3 2 1 32 32 H 1.08997 * 109.46913 * 59.99612 * 4 3 2 33 33 H 1.08994 * 109.46315 * 299.99699 * 4 3 2 34 34 H 1.08998 * 109.47423 * 59.99717 * 5 4 3 35 35 H 1.09003 * 109.46754 * 299.98959 * 5 4 3 36 36 H 0.96998 * 119.99756 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.53917 * 0.02562 * 10 9 7 38 38 H 1.08002 * 118.95355 * 180.02562 * 12 11 10 39 39 H 1.08002 * 120.53954 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.47277 * 299.99868 * 17 15 2 41 41 H 1.08993 * 109.47395 * 60.00482 * 17 15 2 42 42 H 0.96994 * 120.00056 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2170 3.0357 1.4424 6 7 3.4618 3.4583 2.8237 7 6 4.1235 4.6063 3.0700 8 8 4.5176 5.2909 2.1461 9 6 4.3701 5.0329 4.4637 10 6 5.0554 6.2209 4.7420 11 7 5.2491 6.5668 6.0026 12 6 4.8117 5.8089 6.9890 13 7 4.1665 4.6795 6.7718 14 6 3.9293 4.2576 5.5422 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4415 -5.2082 -0.0013 20 1 0.3763 -5.0305 -0.0012 21 6 1.9283 -6.5081 -0.0020 22 7 3.2266 -6.7247 -0.0017 23 14 0.7408 -7.9500 -0.0021 24 1 -0.1148 -7.8866 -1.2143 25 1 1.5069 -9.2222 -0.0024 26 1 -0.1137 -7.8876 1.2107 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6083 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 3.0417 0.9507 1.9563 33 1 1.5002 1.8407 1.9563 34 1 2.6275 3.7952 0.9288 35 1 4.1694 2.9057 0.9285 36 1 3.1470 2.9122 3.5609 37 1 5.4161 6.8473 3.9395 38 1 4.9875 6.1231 8.0073 39 1 3.3998 3.3317 5.3723 40 1 0.7590 -2.5302 0.8897 41 1 0.7585 -2.5299 -0.8902 42 1 3.5668 -7.6330 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737125619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:04 Heat of formation + Delta-G solvation = -20.875358 kcal Electronic energy + Delta-G solvation = -24918.809002 eV Core-core repulsion = 21025.632432 eV Total energy + Delta-G solvation = -3893.176571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73778 -39.88484 -39.48780 -36.39178 -35.23059 -34.36781 -33.19209 -32.46163 -31.92109 -29.26084 -27.25605 -26.11452 -25.54096 -25.21256 -24.52643 -22.18830 -21.40566 -19.26119 -18.69262 -18.21975 -17.75792 -17.71758 -16.76932 -16.39239 -16.07252 -15.76464 -15.42333 -15.29638 -14.83696 -14.75599 -14.40353 -14.24266 -14.11873 -13.88904 -13.40396 -13.10283 -12.72461 -12.68833 -12.52844 -12.29948 -12.21586 -11.92729 -11.85777 -11.50509 -11.09726 -11.07555 -11.06583 -10.79236 -10.48970 -10.34919 -9.90599 -9.85168 -9.56322 -9.44298 -9.09123 -8.65131 -8.27375 -6.54273 -6.24749 -3.95886 -0.16375 0.42268 2.31822 2.48896 2.90224 2.98703 3.20785 3.23130 3.23898 3.26627 3.43344 3.54522 3.56062 3.82222 4.08946 4.17193 4.29862 4.58079 4.62318 4.72671 4.87841 4.89625 5.05347 5.09537 5.10357 5.20074 5.27627 5.36342 5.50433 5.54711 5.63851 5.64338 5.79977 5.83582 5.87363 5.95590 6.08154 6.22829 6.55101 6.89837 7.37789 7.43537 7.55950 7.61355 8.31550 8.47841 9.20367 10.82592 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.001752 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.003460 B =15977.399820 C =16782.223304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.150 4.150 5 C 0.123 3.877 6 N -0.720 5.720 7 C 0.569 3.431 8 O -0.528 6.528 9 C -0.242 4.242 10 C 0.210 3.790 11 N -0.522 5.522 12 C 0.315 3.685 13 N -0.521 5.521 14 C 0.185 3.815 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.401 0.599 37 H 0.183 0.817 38 H 0.204 0.796 39 H 0.172 0.828 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 24.918 9.101 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.189 4.189 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.354 3.646 8 O -0.405 6.405 9 C -0.250 4.250 10 C 0.043 3.957 11 N -0.235 5.235 12 C 0.029 3.971 13 N -0.234 5.234 14 C 0.018 3.982 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.200 0.800 38 H 0.220 0.780 39 H 0.189 0.811 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.857 25.547 9.360 27.271 hybrid contribution -2.633 -1.540 -0.404 3.077 sum -4.491 24.006 8.956 26.013 Atomic orbital electron populations 1.21775 0.79573 1.03095 1.01885 1.47861 1.06861 1.05564 1.75895 1.21209 0.98561 0.85124 0.95295 1.22205 1.00882 0.96375 0.99455 1.21365 1.01086 0.95861 0.81774 1.45886 1.57952 1.23537 1.09841 1.17743 0.78213 0.81179 0.87499 1.90824 1.50724 1.53832 1.45087 1.21824 1.06811 1.00531 0.95835 1.23562 0.86787 0.91175 0.94209 1.68607 1.20738 1.33697 1.00449 1.25343 0.86698 0.85350 0.99735 1.68502 1.15019 1.16183 1.23670 1.23522 0.90395 0.97224 0.87106 1.20384 0.87961 0.84609 0.75024 1.90700 1.13709 1.86786 1.47545 1.23562 1.04588 0.97257 1.04725 1.85399 1.08023 0.93349 1.96719 1.22813 0.94257 0.92211 1.59194 0.90989 1.24993 0.95680 0.98379 0.94499 1.70003 1.11752 1.21808 1.46666 0.86226 0.80182 0.80301 0.78799 1.19923 1.20794 1.19943 0.92625 0.90610 0.91430 0.90473 0.89364 0.90212 0.91096 0.90850 0.90502 0.76398 0.80026 0.77996 0.81068 0.89263 0.89245 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.24 59.85 0.61 1.33 16 2 N -0.63 -7.80 2.87 -181.56 -0.52 -8.32 16 3 C 0.12 1.21 5.41 -4.04 -0.02 1.19 16 4 C -0.15 -1.23 5.65 -26.73 -0.15 -1.38 16 5 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 6 N -0.72 -5.09 5.51 -61.25 -0.34 -5.43 16 7 C 0.57 5.10 7.79 -12.34 -0.10 5.01 16 8 O -0.53 -6.51 16.45 5.31 0.09 -6.42 16 9 C -0.24 -1.83 5.91 -104.70 -0.62 -2.45 16 10 C 0.21 1.64 10.88 -16.78 -0.18 1.45 16 11 N -0.52 -4.16 10.42 -14.25 -0.15 -4.31 16 12 C 0.32 2.11 12.27 -92.03 -1.13 0.98 16 13 N -0.52 -3.91 10.42 -14.24 -0.15 -4.06 16 14 C 0.18 1.19 10.81 -16.77 -0.18 1.01 16 15 C 0.53 9.46 7.69 -10.98 -0.08 9.38 16 16 O -0.51 -11.09 15.44 5.56 0.09 -11.00 16 17 C -0.15 -2.93 4.71 36.01 0.17 -2.76 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 23 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 29 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.09 1.05 7.42 -51.92 -0.39 0.67 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 1.86 6.61 -40.82 -0.27 1.59 16 37 H 0.18 1.24 7.75 -52.49 -0.41 0.83 16 38 H 0.20 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.17 0.59 6.54 -52.49 -0.34 0.25 16 40 H 0.09 1.59 7.40 -51.91 -0.38 1.20 16 41 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -37.39 379.10 -8.74 -46.13 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.46 Total: -1.38 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.51 Total: 1.98 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.42 Total: -47.20 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.39 -8.74 -46.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737125619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.254 kcal (2) G-P(sol) polarization free energy of solvation -37.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds