Wall clock time and date at job start Tue Mar 31 2020 20:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99858 * 2 1 4 4 C 1.53005 * 109.47138 * 90.00574 * 3 2 1 5 5 C 1.52999 * 109.46752 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46685 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00215 * 180.02562 * 6 5 4 8 8 O 1.21561 * 119.99501 * 359.97438 * 7 6 5 9 9 C 1.47820 * 120.00399 * 179.97438 * 7 6 5 10 10 C 1.39948 * 120.94208 * 179.97438 * 9 7 6 11 11 N 1.32147 * 118.92391 * 179.72965 * 10 9 7 12 12 C 1.31864 * 120.96882 * 0.25468 * 11 10 9 13 13 N 1.31867 * 122.09575 * 0.02562 * 12 11 10 14 14 C 1.32147 * 120.96831 * 359.97438 * 13 12 11 15 15 C 1.34780 * 120.00317 * 180.02562 * 2 1 3 16 16 O 1.21277 * 120.00523 * 180.02562 * 15 2 1 17 17 C 1.50703 * 119.99452 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.46915 * 180.02562 * 17 15 2 19 19 C 1.76192 * 100.00110 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00204 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00260 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47410 * 60.00299 * 23 21 19 25 25 H 1.48505 * 109.47123 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47271 * 299.99770 * 23 21 19 27 27 H 1.08995 * 109.47511 * 90.00183 * 1 2 3 28 28 H 1.09007 * 109.46710 * 210.00155 * 1 2 3 29 29 H 1.08999 * 109.46970 * 329.99746 * 1 2 3 30 30 H 1.08998 * 109.47105 * 330.00250 * 3 2 1 31 31 H 1.09009 * 109.46947 * 210.00090 * 3 2 1 32 32 H 1.08997 * 109.46913 * 59.99612 * 4 3 2 33 33 H 1.08994 * 109.46315 * 299.99699 * 4 3 2 34 34 H 1.08998 * 109.47423 * 59.99717 * 5 4 3 35 35 H 1.09003 * 109.46754 * 299.98959 * 5 4 3 36 36 H 0.96998 * 119.99756 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.53917 * 0.02562 * 10 9 7 38 38 H 1.08002 * 118.95355 * 180.02562 * 12 11 10 39 39 H 1.08002 * 120.53954 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.47277 * 299.99868 * 17 15 2 41 41 H 1.08993 * 109.47395 * 60.00482 * 17 15 2 42 42 H 0.96994 * 120.00056 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2170 3.0357 1.4424 6 7 3.4618 3.4583 2.8237 7 6 4.1235 4.6063 3.0700 8 8 4.5176 5.2909 2.1461 9 6 4.3701 5.0329 4.4637 10 6 5.0554 6.2209 4.7420 11 7 5.2491 6.5668 6.0026 12 6 4.8117 5.8089 6.9890 13 7 4.1665 4.6795 6.7718 14 6 3.9293 4.2576 5.5422 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4415 -5.2082 -0.0013 20 1 0.3763 -5.0305 -0.0012 21 6 1.9283 -6.5081 -0.0020 22 7 3.2266 -6.7247 -0.0017 23 14 0.7408 -7.9500 -0.0021 24 1 -0.1148 -7.8866 -1.2143 25 1 1.5069 -9.2222 -0.0024 26 1 -0.1137 -7.8876 1.2107 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6083 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 3.0417 0.9507 1.9563 33 1 1.5002 1.8407 1.9563 34 1 2.6275 3.7952 0.9288 35 1 4.1694 2.9057 0.9285 36 1 3.1470 2.9122 3.5609 37 1 5.4161 6.8473 3.9395 38 1 4.9875 6.1231 8.0073 39 1 3.3998 3.3317 5.3723 40 1 0.7590 -2.5302 0.8897 41 1 0.7585 -2.5299 -0.8902 42 1 3.5668 -7.6330 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737125619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:03 Heat of formation + Delta-G solvation = -47.834008 kcal Electronic energy + Delta-G solvation = -24919.978017 eV Core-core repulsion = 21025.632432 eV Total energy + Delta-G solvation = -3894.345585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29812 -40.88204 -40.43463 -37.33560 -36.17350 -34.93989 -34.57782 -33.86311 -32.71514 -30.58362 -28.06605 -27.67936 -26.82014 -25.81156 -25.28585 -22.94878 -22.10124 -20.57939 -19.51573 -19.27071 -18.77749 -18.31640 -18.04010 -17.30094 -16.87330 -16.82274 -16.76969 -16.56068 -15.95857 -15.84812 -15.32541 -15.16517 -14.74260 -14.64310 -14.52866 -14.50159 -14.23590 -13.54499 -13.44575 -13.25807 -13.16403 -12.97386 -12.85138 -12.82461 -12.67593 -12.58386 -12.06208 -11.85710 -11.69895 -11.22656 -11.12160 -10.94229 -10.86371 -10.45377 -10.25569 -10.22283 -9.68926 -8.66449 -8.33868 -6.12089 -0.71395 -0.12008 1.27108 1.44348 1.46989 1.55938 1.58926 1.65830 1.88444 2.20567 2.29074 2.68233 2.98469 3.00223 3.05429 3.28102 3.29798 3.54231 3.72029 3.75613 3.94221 4.01472 4.15372 4.24975 4.28808 4.39437 4.46239 4.51091 4.58237 4.60253 4.69672 4.82409 4.99007 5.07878 5.11779 5.15138 5.28259 5.42077 5.61502 5.69733 6.20004 6.29365 6.30608 6.85171 6.97466 7.07318 7.17716 8.74980 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.001752 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.003460 B =15977.399820 C =16782.223304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.116 3.884 4 C -0.135 4.135 5 C 0.128 3.872 6 N -0.709 5.709 7 C 0.571 3.429 8 O -0.567 6.567 9 C -0.250 4.250 10 C 0.202 3.798 11 N -0.538 5.538 12 C 0.315 3.685 13 N -0.536 5.536 14 C 0.192 3.808 15 C 0.529 3.471 16 O -0.564 6.564 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.261 1.261 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.414 0.586 37 H 0.184 0.816 38 H 0.232 0.768 39 H 0.200 0.800 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 25.626 9.968 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.007 4.007 4 C -0.174 4.174 5 C 0.004 3.996 6 N -0.361 5.361 7 C 0.357 3.643 8 O -0.447 6.447 9 C -0.257 4.257 10 C 0.036 3.964 11 N -0.252 5.252 12 C 0.029 3.971 13 N -0.249 5.249 14 C 0.024 3.976 15 C 0.317 3.683 16 O -0.443 6.443 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.185 1.185 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.252 0.748 37 H 0.201 0.799 38 H 0.248 0.752 39 H 0.217 0.783 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.086 26.286 10.248 28.667 hybrid contribution -1.695 -1.606 -0.657 2.426 sum -6.780 24.679 9.591 27.332 Atomic orbital electron populations 1.22118 0.76755 1.04938 1.03364 1.47841 1.08539 1.04591 1.73394 1.21446 0.97979 0.84590 0.96674 1.22030 1.01742 0.95483 0.98145 1.21259 1.00290 0.95982 0.82068 1.45782 1.57164 1.23041 1.10128 1.17912 0.77673 0.81107 0.87624 1.90804 1.52497 1.55149 1.46275 1.21685 1.07789 1.00908 0.95340 1.23688 0.86761 0.91483 0.94491 1.68663 1.21528 1.34337 1.00635 1.25967 0.85563 0.84858 1.00706 1.68601 1.15692 1.16634 1.23976 1.23956 0.89497 0.97666 0.86443 1.20145 0.87272 0.85598 0.75329 1.90686 1.15690 1.87502 1.50392 1.23387 1.02694 0.95108 1.06352 1.85588 1.12754 0.97413 1.97034 1.23165 0.94648 0.92650 1.58908 0.89854 1.26129 0.97565 1.01711 0.93762 1.70178 1.14133 1.22496 1.47968 0.85015 0.77630 0.75893 0.79538 1.18657 1.20545 1.18543 0.91298 0.90839 0.87626 0.86587 0.92012 0.92753 0.88345 0.89659 0.92488 0.74830 0.79904 0.75163 0.78328 0.87268 0.87674 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.24 127.77 1.31 2.27 16 2 N -0.61 -13.80 2.87 -846.73 -2.43 -16.23 16 3 C 0.12 2.07 5.41 86.38 0.47 2.53 16 4 C -0.14 -1.93 5.65 30.60 0.17 -1.75 16 5 C 0.13 1.82 5.67 86.38 0.49 2.31 16 6 N -0.71 -8.99 5.51 -465.98 -2.57 -11.56 16 7 C 0.57 9.89 7.79 86.78 0.68 10.57 16 8 O -0.57 -14.09 16.45 -3.91 -0.06 -14.16 16 9 C -0.25 -3.58 5.91 -19.91 -0.12 -3.69 16 10 C 0.20 3.13 10.88 85.06 0.93 4.06 16 11 N -0.54 -8.23 10.42 -198.98 -2.07 -10.30 16 12 C 0.31 3.79 12.27 180.84 2.22 6.01 16 13 N -0.54 -7.17 10.42 -198.98 -2.07 -9.25 16 14 C 0.19 2.14 10.81 85.06 0.92 3.06 16 15 C 0.53 18.61 7.69 87.66 0.67 19.28 16 16 O -0.56 -25.20 15.44 -3.02 -0.05 -25.25 16 17 C -0.12 -4.75 4.71 71.24 0.34 -4.41 16 18 S -0.16 -8.47 20.57 -56.49 -1.16 -9.64 16 19 C -0.55 -30.63 9.50 67.96 0.65 -29.98 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.74 5.49 84.86 0.47 1.20 16 22 N -0.91 -55.53 13.22 21.65 0.29 -55.25 16 23 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.09 6.44 -2.38 -0.02 1.07 16 29 H 0.11 0.72 8.07 -2.39 -0.02 0.70 16 30 H 0.12 1.22 8.07 -2.39 -0.02 1.20 16 31 H 0.06 1.47 7.42 -2.38 -0.02 1.46 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.41 2.94 6.61 -92.71 -0.61 2.32 16 37 H 0.18 2.61 7.75 -2.91 -0.02 2.59 16 38 H 0.23 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.20 0.87 6.54 -2.91 -0.02 0.85 16 40 H 0.11 3.71 7.40 -2.39 -0.02 3.69 16 41 H 0.11 3.66 8.11 -2.40 -0.02 3.64 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -85.42 379.10 1.52 -83.90 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.44 Total: 11.44 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 9.18 Total: 11.45 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -8.86 Total: -102.59 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.11 Total: -39.40 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.64 kcal Total: -85.42 1.52 -83.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737125619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.068 kcal (2) G-P(sol) polarization free energy of solvation -85.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds