Wall clock time and date at job start Tue Mar 31 2020 20:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34257 * 125.75403 * 2 1 4 4 C 1.38045 * 107.41915 * 179.84749 * 3 2 1 5 5 C 1.47428 * 126.41802 * 180.12732 * 4 3 2 6 6 O 1.21611 * 119.99565 * 0.31565 * 5 4 3 7 7 N 1.34771 * 120.00319 * 180.31555 * 5 4 3 8 8 C 1.47066 * 136.05422 * 355.19105 * 7 5 4 9 9 C 1.53760 * 87.88820 * 152.95884 * 8 7 5 10 10 C 1.47069 * 136.05922 * 175.55442 * 7 5 4 11 11 H 1.08992 * 113.46571 * 92.30689 * 10 7 5 12 12 C 1.52996 * 113.46583 * 321.86758 * 10 7 5 13 13 N 1.46498 * 109.47344 * 175.88858 * 12 10 7 14 14 C 1.34775 * 120.00500 * 180.47288 * 13 12 10 15 15 O 1.21284 * 119.99907 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00001 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46863 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99824 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00279 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99692 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00062 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00308 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46959 * 89.99702 * 22 20 18 24 24 H 1.48496 * 109.47241 * 209.99609 * 22 20 18 25 25 H 1.48501 * 109.47157 * 330.00033 * 22 20 18 26 26 C 1.41291 * 107.16899 * 0.41554 * 4 3 2 27 27 N 1.30451 * 108.02027 * 359.74639 * 26 4 3 28 28 H 1.08994 * 109.47347 * 269.71174 * 1 2 3 29 29 H 1.09008 * 109.47057 * 149.71466 * 1 2 3 30 30 H 1.08993 * 109.47410 * 29.71591 * 1 2 3 31 31 H 1.08005 * 126.29059 * 0.02562 * 3 2 1 32 32 H 1.09005 * 113.46423 * 267.68697 * 8 7 5 33 33 H 1.08994 * 113.46922 * 38.13096 * 8 7 5 34 34 H 1.08994 * 114.39437 * 272.67636 * 9 8 7 35 35 H 1.08996 * 114.26795 * 139.78450 * 9 8 7 36 36 H 1.09004 * 109.47420 * 295.89049 * 12 10 7 37 37 H 1.09005 * 109.47386 * 55.88697 * 12 10 7 38 38 H 0.97006 * 119.99646 * 0.46645 * 13 12 10 39 39 H 1.08995 * 109.47185 * 299.99206 * 16 14 13 40 40 H 1.08996 * 109.47066 * 59.99945 * 16 14 13 41 41 H 0.97001 * 120.00791 * 180.02562 * 21 20 18 42 42 H 1.08001 * 125.98953 * 179.72725 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6553 0.0035 5 6 4.7638 1.5061 0.0074 6 8 4.6525 2.7171 0.0136 7 7 5.9877 0.9419 0.0042 8 6 6.5236 -0.4254 0.0827 9 6 7.7518 0.0721 -0.6972 10 6 7.3754 1.4230 -0.0729 11 1 7.8309 1.5923 0.9026 12 6 7.5579 2.6063 -1.0254 13 7 8.9443 3.0755 -0.9613 14 6 9.3368 4.1227 -1.7134 15 8 8.5424 4.6764 -2.4437 16 6 10.7628 4.6056 -1.6470 17 16 10.9755 6.0138 -2.7641 18 6 12.6808 6.3648 -2.4926 19 1 13.2515 5.7662 -1.7982 20 6 13.2908 7.4102 -3.1720 21 7 14.5648 7.6721 -2.9696 22 14 12.3039 8.4453 -4.3737 23 1 11.6976 9.5948 -3.6550 24 1 13.2000 8.9486 -5.4456 25 1 11.2295 7.6155 -4.9756 26 6 3.5311 -0.7573 -0.0041 27 7 2.2826 -1.1356 -0.0062 28 1 -0.3634 -0.0052 1.0276 29 1 -0.3633 -0.8875 -0.5183 30 1 -0.3634 0.8924 -0.5094 31 1 1.9165 2.1170 0.0004 32 1 6.7547 -0.7433 1.0994 33 1 5.9281 -1.1570 -0.4633 34 1 7.6423 0.0347 -1.7810 35 1 8.7003 -0.3338 -0.3457 36 1 7.3273 2.2923 -2.0434 37 1 6.8870 3.4144 -0.7337 38 1 9.5797 2.6324 -0.3774 39 1 10.9955 4.9121 -0.6272 40 1 11.4335 3.8002 -1.9464 41 1 14.9911 8.4029 -3.4441 42 1 4.3919 -1.4096 -0.0080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738640208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:41 Heat of formation + Delta-G solvation = 55.614258 kcal Electronic energy + Delta-G solvation = -25417.749807 eV Core-core repulsion = 21527.890075 eV Total energy + Delta-G solvation = -3889.859732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85869 -40.68482 -39.03173 -37.86678 -34.52460 -33.92029 -32.40940 -31.14827 -30.30213 -29.79629 -27.96650 -27.25579 -25.57769 -23.75713 -23.45983 -21.69421 -21.26380 -20.54574 -19.41638 -18.06350 -17.80185 -16.73315 -16.61179 -16.32283 -16.09806 -15.64441 -15.34243 -15.24837 -14.93070 -14.72476 -14.21485 -13.94814 -13.82722 -13.61453 -13.38103 -13.24553 -13.16834 -13.02880 -12.79056 -12.75793 -12.39627 -11.95356 -11.77132 -11.45596 -11.23760 -10.98489 -10.93365 -10.55875 -10.09633 -10.04833 -9.82641 -9.47893 -9.25824 -8.98506 -8.96796 -8.89735 -8.45806 -6.88065 -6.26124 -3.97440 1.09887 1.73188 1.81868 2.37540 2.85474 3.04444 3.14006 3.35859 3.41717 3.54174 3.73303 3.84036 3.89676 4.28164 4.30593 4.36421 4.40309 4.54434 4.57526 4.60616 4.75186 4.79577 4.82073 4.91213 4.94580 4.99849 5.06497 5.13081 5.34792 5.36367 5.50646 5.60335 5.76882 5.84101 5.92027 6.03901 6.06084 6.29071 6.54819 7.03530 7.41005 7.64540 7.96887 7.97232 8.44274 8.55468 9.20325 10.83033 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.001857 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.618766 B =15077.425255 C =15836.205927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.130 3.870 4 C -0.288 4.288 5 C 0.623 3.377 6 O -0.538 6.538 7 N -0.639 5.639 8 C 0.095 3.905 9 C -0.151 4.151 10 C 0.127 3.873 11 H 0.101 0.899 12 C 0.116 3.884 13 N -0.734 5.734 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.077 3.923 27 N -0.299 5.299 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.190 0.810 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.399 0.601 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.270 0.730 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.452 -23.236 9.654 35.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.021 4.021 4 C -0.303 4.303 5 C 0.414 3.586 6 O -0.415 6.415 7 N -0.375 5.375 8 C -0.028 4.028 9 C -0.189 4.189 10 C 0.024 3.976 11 H 0.118 0.882 12 C -0.009 4.009 13 N -0.389 5.389 14 C 0.316 3.684 15 O -0.390 6.390 16 C -0.273 4.273 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.111 4.111 27 N -0.119 5.119 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.207 0.793 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -26.927 -22.451 8.384 36.047 hybrid contribution 1.554 0.358 0.778 1.775 sum -25.373 -22.093 9.163 34.869 Atomic orbital electron populations 1.22031 0.73230 1.05185 1.04060 1.48444 1.07365 1.03827 1.54628 1.23017 0.90016 0.93879 0.95227 1.20124 0.93063 0.93501 1.23619 1.16747 0.80309 0.86361 0.75178 1.90838 1.85740 1.13954 1.50953 1.49359 1.03982 1.09910 1.74280 1.23181 0.93279 0.85459 1.00857 1.23650 0.98528 0.95195 1.01510 1.22853 0.80659 0.94880 0.99250 0.88173 1.21440 0.83874 0.96406 0.99172 1.45787 1.11487 1.34614 1.47021 1.20267 0.89885 0.79027 0.79201 1.90719 1.54465 1.55526 1.38337 1.23267 0.94959 1.03583 1.05516 1.84833 1.15339 1.36549 1.54876 1.22324 0.92768 1.20696 1.31064 0.89374 1.24706 0.94518 0.96091 0.95968 1.69937 1.10162 1.29958 1.41696 0.86739 0.81374 0.82096 0.81681 1.19207 1.19973 1.15906 1.24392 0.95360 0.94066 0.97241 1.77198 1.01938 1.07945 1.24838 0.90063 0.88741 0.88821 0.79261 0.89161 0.89954 0.88083 0.88590 0.91116 0.89869 0.76750 0.88466 0.88404 0.91975 0.79078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.27 11.44 59.85 0.68 0.95 16 2 N -0.36 -2.65 3.98 -67.60 -0.27 -2.92 16 3 C 0.13 1.06 11.30 -16.56 -0.19 0.88 16 4 C -0.29 -2.79 6.13 -105.07 -0.64 -3.44 16 5 C 0.62 7.40 7.94 -12.52 -0.10 7.30 16 6 O -0.54 -8.54 16.48 5.27 0.09 -8.45 16 7 N -0.64 -5.78 3.56 -178.54 -0.64 -6.42 16 8 C 0.10 0.44 7.35 -8.36 -0.06 0.38 16 9 C -0.15 -0.77 8.03 -26.08 -0.21 -0.98 16 10 C 0.13 1.06 4.06 -72.39 -0.29 0.76 16 11 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 12 C 0.12 1.46 5.46 -4.04 -0.02 1.44 16 13 N -0.73 -9.46 5.56 -60.29 -0.33 -9.79 16 14 C 0.53 9.72 7.85 -10.99 -0.09 9.63 16 15 O -0.52 -11.78 15.86 5.55 0.09 -11.69 16 16 C -0.12 -2.39 6.16 36.01 0.22 -2.16 16 17 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 18 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 22 Si 0.86 22.08 27.74 -169.99 -4.72 17.37 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 26 C 0.08 0.62 11.17 -16.98 -0.19 0.43 16 27 N -0.30 -2.70 12.50 30.86 0.39 -2.31 16 28 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.22 8.14 -51.92 -0.42 -0.21 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.19 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.26 5.78 -51.93 -0.30 -0.04 16 34 H 0.10 0.60 7.95 -51.93 -0.41 0.18 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 37 H 0.08 1.35 7.14 -51.93 -0.37 0.98 16 38 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.19 0.96 5.08 -52.49 -0.27 0.69 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -40.75 373.42 -7.15 -47.89 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.49 Total: -0.78 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.67 Total: 3.11 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.08 Total: -47.39 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.72 Total: 17.37 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -40.75 -7.15 -47.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738640208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.505 kcal (2) G-P(sol) polarization free energy of solvation -40.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds