Wall clock time and date at job start Tue Mar 31 2020 20:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34257 * 125.75403 * 2 1 4 4 C 1.38045 * 107.41915 * 179.84749 * 3 2 1 5 5 C 1.47428 * 126.41802 * 180.12732 * 4 3 2 6 6 O 1.21611 * 119.99565 * 0.31565 * 5 4 3 7 7 N 1.34771 * 120.00319 * 180.31555 * 5 4 3 8 8 C 1.47066 * 136.05422 * 355.19105 * 7 5 4 9 9 C 1.53760 * 87.88820 * 152.95884 * 8 7 5 10 10 C 1.47069 * 136.05922 * 175.55442 * 7 5 4 11 11 H 1.08992 * 113.46571 * 92.30689 * 10 7 5 12 12 C 1.52996 * 113.46583 * 321.86758 * 10 7 5 13 13 N 1.46498 * 109.47344 * 175.88858 * 12 10 7 14 14 C 1.34775 * 120.00500 * 180.47288 * 13 12 10 15 15 O 1.21284 * 119.99907 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00001 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46863 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99824 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00279 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99692 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00062 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00308 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46959 * 89.99702 * 22 20 18 24 24 H 1.48496 * 109.47241 * 209.99609 * 22 20 18 25 25 H 1.48501 * 109.47157 * 330.00033 * 22 20 18 26 26 C 1.41291 * 107.16899 * 0.41554 * 4 3 2 27 27 N 1.30451 * 108.02027 * 359.74639 * 26 4 3 28 28 H 1.08994 * 109.47347 * 269.71174 * 1 2 3 29 29 H 1.09008 * 109.47057 * 149.71466 * 1 2 3 30 30 H 1.08993 * 109.47410 * 29.71591 * 1 2 3 31 31 H 1.08005 * 126.29059 * 0.02562 * 3 2 1 32 32 H 1.09005 * 113.46423 * 267.68697 * 8 7 5 33 33 H 1.08994 * 113.46922 * 38.13096 * 8 7 5 34 34 H 1.08994 * 114.39437 * 272.67636 * 9 8 7 35 35 H 1.08996 * 114.26795 * 139.78450 * 9 8 7 36 36 H 1.09004 * 109.47420 * 295.89049 * 12 10 7 37 37 H 1.09005 * 109.47386 * 55.88697 * 12 10 7 38 38 H 0.97006 * 119.99646 * 0.46645 * 13 12 10 39 39 H 1.08995 * 109.47185 * 299.99206 * 16 14 13 40 40 H 1.08996 * 109.47066 * 59.99945 * 16 14 13 41 41 H 0.97001 * 120.00791 * 180.02562 * 21 20 18 42 42 H 1.08001 * 125.98953 * 179.72725 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6553 0.0035 5 6 4.7638 1.5061 0.0074 6 8 4.6525 2.7171 0.0136 7 7 5.9877 0.9419 0.0042 8 6 6.5236 -0.4254 0.0827 9 6 7.7518 0.0721 -0.6972 10 6 7.3754 1.4230 -0.0729 11 1 7.8309 1.5923 0.9026 12 6 7.5579 2.6063 -1.0254 13 7 8.9443 3.0755 -0.9613 14 6 9.3368 4.1227 -1.7134 15 8 8.5424 4.6764 -2.4437 16 6 10.7628 4.6056 -1.6470 17 16 10.9755 6.0138 -2.7641 18 6 12.6808 6.3648 -2.4926 19 1 13.2515 5.7662 -1.7982 20 6 13.2908 7.4102 -3.1720 21 7 14.5648 7.6721 -2.9696 22 14 12.3039 8.4453 -4.3737 23 1 11.6976 9.5948 -3.6550 24 1 13.2000 8.9486 -5.4456 25 1 11.2295 7.6155 -4.9756 26 6 3.5311 -0.7573 -0.0041 27 7 2.2826 -1.1356 -0.0062 28 1 -0.3634 -0.0052 1.0276 29 1 -0.3633 -0.8875 -0.5183 30 1 -0.3634 0.8924 -0.5094 31 1 1.9165 2.1170 0.0004 32 1 6.7547 -0.7433 1.0994 33 1 5.9281 -1.1570 -0.4633 34 1 7.6423 0.0347 -1.7810 35 1 8.7003 -0.3338 -0.3457 36 1 7.3273 2.2923 -2.0434 37 1 6.8870 3.4144 -0.7337 38 1 9.5797 2.6324 -0.3774 39 1 10.9955 4.9121 -0.6272 40 1 11.4335 3.8002 -1.9464 41 1 14.9911 8.4029 -3.4441 42 1 4.3919 -1.4096 -0.0080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738640208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:40 Heat of formation + Delta-G solvation = 23.407514 kcal Electronic energy + Delta-G solvation = -25419.146396 eV Core-core repulsion = 21527.890075 eV Total energy + Delta-G solvation = -3891.256321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45629 -41.40127 -40.41788 -38.72808 -35.78145 -34.66100 -34.43775 -32.00521 -31.44151 -30.50315 -28.87805 -27.89729 -27.73838 -24.35483 -24.23793 -22.24150 -21.98173 -21.79705 -20.24838 -19.77927 -18.58872 -17.93341 -17.70318 -17.16832 -17.08800 -16.71060 -16.62684 -16.49302 -16.08282 -15.64772 -15.41578 -15.02578 -14.94448 -14.84722 -14.58661 -14.14139 -14.00307 -13.63141 -13.56533 -13.48421 -13.39380 -13.33899 -13.02512 -12.87081 -12.65650 -12.47808 -12.02064 -11.87303 -11.57460 -11.16568 -11.06279 -10.87344 -10.64543 -10.51620 -10.17773 -9.97154 -9.57800 -8.99123 -8.50719 -6.21304 0.46166 0.98116 1.10326 1.31475 1.34240 1.46912 1.53905 1.55539 1.78937 2.24982 2.31686 2.42864 2.74424 2.87577 3.30695 3.42759 3.71256 3.75168 3.86422 3.92595 4.02685 4.06065 4.09997 4.26404 4.38461 4.41673 4.48637 4.50116 4.55034 4.60258 4.67187 4.72525 4.80431 5.04324 5.05674 5.28232 5.34219 5.42868 5.72017 5.80078 6.12675 6.45749 6.46170 6.72125 6.94925 7.15554 7.20923 8.61418 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.001857 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.618766 B =15077.425255 C =15836.205927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.361 5.361 3 C 0.128 3.872 4 C -0.314 4.314 5 C 0.614 3.386 6 O -0.596 6.596 7 N -0.645 5.645 8 C 0.097 3.903 9 C -0.135 4.135 10 C 0.122 3.878 11 H 0.122 0.878 12 C 0.122 3.878 13 N -0.702 5.702 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.107 4.107 17 S -0.184 6.184 18 C -0.526 4.526 19 H 0.066 0.934 20 C 0.048 3.952 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.264 1.264 24 H -0.258 1.258 25 H -0.239 1.239 26 C 0.084 3.916 27 N -0.324 5.324 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.202 0.798 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.422 0.578 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.277 0.723 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.092 -25.819 10.444 37.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.139 5.139 3 C -0.026 4.026 4 C -0.329 4.329 5 C 0.406 3.594 6 O -0.478 6.478 7 N -0.380 5.380 8 C -0.023 4.023 9 C -0.173 4.173 10 C 0.018 3.982 11 H 0.140 0.860 12 C -0.003 4.003 13 N -0.358 5.358 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.257 4.257 17 S 0.042 5.958 18 C -0.674 4.674 19 H 0.084 0.916 20 C -0.158 4.158 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.189 1.189 24 H -0.182 1.182 25 H -0.163 1.163 26 C -0.102 4.102 27 N -0.144 5.144 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.219 0.781 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.148 0.852 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.260 0.740 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -27.541 -25.141 9.218 38.413 hybrid contribution 1.695 1.032 0.638 2.084 sum -25.846 -24.110 9.856 36.694 Atomic orbital electron populations 1.22404 0.70925 1.06614 1.05437 1.48785 1.08651 1.03070 1.53373 1.23301 0.90099 0.94708 0.94471 1.20165 0.92862 0.94230 1.25608 1.17143 0.81694 0.85929 0.74589 1.90797 1.86745 1.16289 1.53928 1.49568 1.03389 1.12173 1.72847 1.23502 0.92563 0.83561 1.02717 1.23636 1.00340 0.92257 1.01047 1.23108 0.81061 0.94516 0.99494 0.86042 1.21384 0.82283 0.96872 0.99737 1.45446 1.12224 1.32637 1.45452 1.20088 0.88919 0.79819 0.79329 1.90710 1.55480 1.57565 1.40896 1.23243 0.96416 1.01410 1.04671 1.84844 1.12992 1.40389 1.57545 1.22448 0.94236 1.20354 1.30337 0.91575 1.25508 0.95442 0.97265 0.97576 1.70005 1.11460 1.30910 1.42944 0.85908 0.80154 0.80465 0.80096 1.18927 1.18204 1.16307 1.24750 0.95910 0.93508 0.96080 1.77150 1.02500 1.09011 1.25781 0.88668 0.88121 0.86666 0.78125 0.86311 0.88237 0.88928 0.85223 0.92490 0.93934 0.73995 0.86567 0.86012 0.91380 0.76539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.44 127.77 1.46 1.81 16 2 N -0.36 -4.87 3.98 -367.79 -1.46 -6.33 16 3 C 0.13 2.05 11.30 84.28 0.95 3.01 16 4 C -0.31 -5.97 6.13 -20.15 -0.12 -6.10 16 5 C 0.61 14.78 7.94 86.66 0.69 15.46 16 6 O -0.60 -20.07 16.48 -4.07 -0.07 -20.13 16 7 N -0.65 -10.77 3.56 -837.02 -2.98 -13.75 16 8 C 0.10 0.54 7.35 83.27 0.61 1.15 16 9 C -0.14 -0.87 8.03 31.02 0.25 -0.62 16 10 C 0.12 1.76 4.06 41.79 0.17 1.93 16 11 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 12 C 0.12 3.05 5.46 86.38 0.47 3.52 16 13 N -0.70 -16.96 5.56 -463.06 -2.57 -19.54 16 14 C 0.53 19.12 7.85 87.66 0.69 19.81 16 15 O -0.57 -26.34 15.86 -3.04 -0.05 -26.38 16 16 C -0.11 -4.00 6.16 71.24 0.44 -3.57 16 17 S -0.18 -9.50 18.55 -56.49 -1.05 -10.55 16 18 C -0.53 -30.76 10.04 67.95 0.68 -30.07 16 19 H 0.07 4.03 8.03 -2.91 -0.02 4.01 16 20 C 0.05 2.81 5.50 84.86 0.47 3.28 16 21 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 22 Si 0.91 45.74 27.74 68.60 1.90 47.65 16 23 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.24 -12.07 6.74 99.48 0.67 -11.40 16 26 C 0.08 1.23 11.17 85.65 0.96 2.18 16 27 N -0.32 -5.41 12.50 -56.27 -0.70 -6.11 16 28 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.10 0.25 5.78 -2.39 -0.01 0.23 16 34 H 0.09 0.82 7.95 -2.39 -0.02 0.80 16 35 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.06 1.59 7.89 -2.38 -0.02 1.57 16 37 H 0.04 1.45 7.14 -2.38 -0.02 1.43 16 38 H 0.42 6.33 8.47 -92.70 -0.79 5.55 16 39 H 0.12 3.97 8.14 -2.40 -0.02 3.95 16 40 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16 41 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.22 1.56 5.08 -2.91 -0.01 1.55 16 Total: -1.00 -93.03 373.42 1.28 -91.75 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.24 Total: 7.12 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 7.71 Total: 11.81 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -7.42 Total: -101.26 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.12 Total: -46.52 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -9.50 SS G_CDS: -1.05 Total: -10.55 kcal Total: -93.03 1.28 -91.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738640208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.157 kcal (2) G-P(sol) polarization free energy of solvation -93.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds