Wall clock time and date at job start Tue Mar 31 2020 20:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46881 * 2 1 4 4 C 1.46494 * 119.99938 * 97.04516 * 3 2 1 5 5 C 1.53002 * 109.46986 * 269.99476 * 4 3 2 6 6 N 1.46504 * 109.46993 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99777 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00011 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99702 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46995 * 180.02562 * 9 7 6 11 11 C 1.76205 * 100.00336 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99307 * 359.97438 * 11 10 9 13 13 C 1.38790 * 120.00257 * 180.02562 * 11 10 9 14 14 N 1.31638 * 120.00024 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00022 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47526 * 89.99727 * 15 13 11 17 17 H 1.48508 * 109.47117 * 209.99802 * 15 13 11 18 18 H 1.48503 * 109.47206 * 329.99488 * 15 13 11 19 19 C 1.34786 * 119.99761 * 277.04071 * 3 2 1 20 20 O 1.21477 * 119.99586 * 176.41527 * 19 3 2 21 21 C 1.48452 * 119.99987 * 356.40860 * 19 3 2 22 22 C 1.39532 * 120.54700 * 186.50599 * 21 19 3 23 23 C 1.38765 * 118.26338 * 179.97438 * 22 21 19 24 24 N 1.32204 * 119.14657 * 0.02562 * 23 22 21 25 25 C 1.31889 * 121.03616 * 359.97438 * 24 23 22 26 26 N 1.31575 * 121.91755 * 359.74305 * 25 24 23 27 27 H 1.08998 * 109.46676 * 59.99912 * 1 2 3 28 28 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47045 * 299.99995 * 1 2 3 30 30 H 1.09003 * 109.47045 * 240.00005 * 2 1 3 31 31 H 1.08998 * 109.46676 * 120.00088 * 2 1 3 32 32 H 1.09000 * 109.47501 * 29.99922 * 4 3 2 33 33 H 1.09004 * 109.47180 * 150.00100 * 4 3 2 34 34 H 1.08991 * 109.47205 * 299.99944 * 5 4 3 35 35 H 1.08992 * 109.47024 * 60.00516 * 5 4 3 36 36 H 0.97001 * 120.00166 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47219 * 299.99554 * 9 7 6 38 38 H 1.08995 * 109.47599 * 60.00313 * 9 7 6 39 39 H 0.96999 * 119.99468 * 179.97438 * 14 13 11 40 40 H 1.07994 * 120.87208 * 0.02562 * 22 21 19 41 41 H 1.07998 * 120.42501 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.03913 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4092 2.0199 1.2591 5 6 1.1955 2.7196 1.8743 6 7 1.5862 3.3578 3.1338 7 6 0.6739 4.0381 3.8558 8 8 -0.4705 4.1216 3.4632 9 6 1.0760 4.6951 5.1511 10 16 -0.3598 5.5226 5.8789 11 6 0.3749 6.1838 7.3376 12 1 1.4221 6.0138 7.5394 13 6 -0.3925 6.9223 8.2277 14 7 -1.6690 7.1291 7.9819 15 14 0.3866 7.6238 9.7738 16 1 0.9157 8.9819 9.4891 17 1 -0.6343 7.7057 10.8492 18 1 1.4978 6.7416 10.2122 19 6 2.1080 2.0643 -1.1585 20 8 2.4507 3.2297 -1.1514 21 6 1.7883 1.3923 -2.4430 22 6 2.0059 2.0438 -3.6576 23 6 1.6907 1.3712 -4.8297 24 7 1.1986 0.1463 -4.7568 25 6 1.0052 -0.4406 -3.5916 26 7 1.2945 0.1565 -2.4554 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7815 1.2636 1.9500 33 1 3.1924 2.7533 1.0667 34 1 0.8233 3.4759 1.1834 35 1 0.4124 1.9863 2.0667 36 1 2.5016 3.2914 3.4476 37 1 1.4478 3.9386 5.8422 38 1 1.8594 5.4281 4.9589 39 1 -2.2053 7.6449 8.6042 40 1 2.4098 3.0450 -3.6848 41 1 1.8454 1.8423 -5.7891 42 1 0.6018 -1.4422 -3.5697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745282134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:58 Heat of formation + Delta-G solvation = 0.526067 kcal Electronic energy + Delta-G solvation = -25677.627342 eV Core-core repulsion = 21785.378807 eV Total energy + Delta-G solvation = -3892.248535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.87605 -40.07923 -39.04777 -36.80716 -34.98692 -34.05463 -32.65647 -32.41755 -31.32005 -30.02177 -28.25155 -25.99662 -25.44833 -24.95840 -23.69901 -23.04610 -20.86236 -20.21415 -18.42730 -18.01788 -17.84608 -16.70582 -16.45870 -16.26238 -15.99187 -15.82841 -15.63126 -15.27857 -14.79714 -14.75075 -14.62434 -14.25082 -14.01668 -13.83086 -13.51932 -13.24801 -12.99230 -12.60458 -12.44715 -12.12020 -11.94867 -11.84239 -11.44157 -11.41617 -11.05451 -11.01466 -10.89913 -10.80908 -10.75376 -10.32920 -9.81325 -9.64626 -9.46538 -9.10208 -9.06097 -8.89751 -8.22315 -6.48845 -6.20565 -3.91131 -0.06472 0.32486 2.20303 2.30395 3.07580 3.11064 3.23229 3.23789 3.27530 3.30313 3.36676 3.55847 3.75042 3.87274 4.21372 4.22934 4.44756 4.61239 4.66851 4.78160 4.94611 4.99886 5.08163 5.12611 5.14538 5.20165 5.27040 5.45239 5.54845 5.64132 5.68958 5.77858 5.89455 5.90734 6.09491 6.12084 6.15008 6.23370 6.58600 6.82470 7.32816 7.58028 7.60572 7.69105 8.36302 8.61570 9.24662 10.86867 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001788 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.258902 B =15653.951688 C =15779.480917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.586 5.586 4 C 0.104 3.896 5 C 0.107 3.893 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.567 3.433 20 O -0.517 6.517 21 C 0.133 3.867 22 C -0.167 4.167 23 C 0.152 3.848 24 N -0.507 5.507 25 C 0.288 3.712 26 N -0.484 5.484 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.176 -18.464 -23.995 32.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.318 5.318 4 C -0.019 4.019 5 C -0.018 4.018 6 N -0.393 5.393 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.352 3.648 20 O -0.391 6.391 21 C -0.014 4.014 22 C -0.190 4.190 23 C -0.015 4.015 24 N -0.221 5.221 25 C 0.000 4.000 26 N -0.201 5.201 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.909 -18.533 -24.522 32.003 hybrid contribution 2.434 1.090 1.583 3.101 sum 11.343 -17.443 -22.940 30.970 Atomic orbital electron populations 1.22098 0.95321 1.02273 1.01977 1.22270 0.95352 0.80622 1.04407 1.47770 1.63350 1.14976 1.05674 1.21731 0.97329 0.98336 0.84517 1.21611 0.96889 0.97358 0.85957 1.45843 1.13524 1.56461 1.23422 1.20309 0.85109 0.77564 0.85125 1.90707 1.19189 1.58737 1.70363 1.23525 1.07216 1.03185 0.96404 1.85417 1.08214 1.65264 1.24511 1.22868 0.98552 1.39160 1.07762 0.90903 1.24998 0.94776 0.95521 0.98337 1.70025 1.05816 1.37859 1.36590 0.86161 0.78821 0.79268 0.81195 1.20275 1.20759 1.19705 1.17876 0.78393 0.85671 0.82872 1.90848 1.46751 1.15146 1.86352 1.21594 0.94446 0.90825 0.94523 1.23019 0.99836 1.03284 0.92881 1.23410 0.89605 0.89550 0.98951 1.68376 1.12374 1.10992 1.30339 1.25188 0.92116 1.00233 0.82431 1.68885 1.11605 1.08798 1.30846 0.92556 0.91467 0.92681 0.86498 0.90875 0.89249 0.88961 0.91251 0.91285 0.76793 0.89151 0.89128 0.92194 0.82071 0.80515 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.61 37.16 0.36 -0.86 16 2 C 0.10 0.65 5.75 -4.04 -0.02 0.63 16 3 N -0.59 -5.27 2.49 -174.57 -0.43 -5.70 16 4 C 0.10 0.92 5.53 -4.04 -0.02 0.90 16 5 C 0.11 1.34 6.00 -4.04 -0.02 1.31 16 6 N -0.74 -10.00 5.56 -60.30 -0.33 -10.33 16 7 C 0.53 10.18 7.85 -10.99 -0.09 10.09 16 8 O -0.52 -12.11 15.86 5.56 0.09 -12.02 16 9 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 15 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 19 C 0.57 6.02 7.61 -12.05 -0.09 5.93 16 20 O -0.52 -7.02 16.06 5.39 0.09 -6.94 16 21 C 0.13 1.14 6.53 -82.63 -0.54 0.60 16 22 C -0.17 -1.15 9.72 -38.90 -0.38 -1.53 16 23 C 0.15 0.83 11.31 -17.20 -0.19 0.63 16 24 N -0.51 -3.37 10.42 -14.60 -0.15 -3.52 16 25 C 0.29 1.67 12.27 -92.26 -1.13 0.53 16 26 N -0.48 -3.41 4.64 -11.14 -0.05 -3.46 16 27 H 0.06 0.50 6.84 -51.93 -0.36 0.15 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.51 6.78 -51.93 -0.35 0.16 16 30 H 0.12 0.74 5.20 -52.10 -0.27 0.47 16 31 H 0.07 0.40 7.82 -51.93 -0.41 -0.01 16 32 H 0.09 0.57 7.85 -51.93 -0.41 0.16 16 33 H 0.09 0.86 7.47 -51.93 -0.39 0.48 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.90 6.78 -51.93 -0.35 0.55 16 36 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.16 0.99 7.75 -52.49 -0.41 0.58 16 41 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.20 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -37.94 372.79 -8.76 -46.70 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.37 Total: 0.36 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.72 Total: 2.30 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.24 Total: -48.65 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.94 -8.76 -46.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745282134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.227 kcal (2) G-P(sol) polarization free energy of solvation -37.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds