Wall clock time and date at job start Tue Mar 31 2020 20:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35842 * 126.13573 * 2 1 4 4 N 1.30173 * 109.00187 * 179.76082 * 3 2 1 5 5 C 1.35750 * 108.86646 * 0.38257 * 4 3 2 6 6 C 1.47329 * 126.23417 * 179.88526 * 5 4 3 7 7 O 1.21621 * 119.99949 * 179.69441 * 6 5 4 8 8 N 1.34775 * 119.99774 * 359.68158 * 6 5 4 9 9 C 1.47582 * 134.49667 * 0.02562 * 8 6 5 10 10 C 1.53948 * 86.11463 * 204.63213 * 9 8 6 11 11 C 1.47588 * 134.48736 * 179.97438 * 8 6 5 12 12 H 1.09002 * 113.87145 * 269.67619 * 11 8 6 13 13 C 1.52996 * 113.76871 * 41.06853 * 11 8 6 14 14 N 1.46497 * 109.47359 * 281.49140 * 13 11 8 15 15 C 1.34778 * 120.00309 * 180.02562 * 14 13 11 16 16 O 1.21276 * 119.99491 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99778 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.46742 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99907 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99832 * 180.27629 * 19 18 17 22 22 N 1.31631 * 119.99781 * 179.72124 * 21 19 18 23 23 Si 1.86800 * 119.99986 * 359.71904 * 21 19 18 24 24 H 1.48510 * 109.47082 * 90.00406 * 23 21 19 25 25 H 1.48504 * 109.47159 * 210.00067 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00310 * 23 21 19 27 27 C 1.35380 * 126.13522 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47286 * 269.99875 * 1 2 3 29 29 H 1.09001 * 109.47352 * 29.99636 * 1 2 3 30 30 H 1.09001 * 109.47495 * 150.00125 * 1 2 3 31 31 H 1.08005 * 125.50010 * 0.02562 * 3 2 1 32 32 H 1.08996 * 113.76953 * 90.32803 * 9 8 6 33 33 H 1.09000 * 113.86221 * 318.94106 * 9 8 6 34 34 H 1.08999 * 113.73666 * 222.04347 * 10 9 8 35 35 H 1.08996 * 113.84224 * 90.74839 * 10 9 8 36 36 H 1.09000 * 109.46959 * 161.49119 * 13 11 8 37 37 H 1.09006 * 109.47312 * 41.49180 * 13 11 8 38 38 H 0.97005 * 119.99622 * 359.97438 * 14 13 11 39 39 H 1.09000 * 109.47396 * 59.99696 * 17 15 14 40 40 H 1.09001 * 109.47080 * 299.99119 * 17 15 14 41 41 H 0.97000 * 119.99427 * 179.97438 * 22 21 19 42 42 H 1.08002 * 126.56010 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0051 5 6 3.5511 -0.6433 0.0000 6 6 4.7652 -1.4778 0.0009 7 8 4.6698 -2.6902 0.0015 8 7 5.9817 -0.8975 0.0007 9 6 6.4620 0.4979 0.0002 10 6 7.7482 -0.0553 -0.6398 11 6 7.3685 -1.4026 0.0018 12 1 7.7845 -1.5471 0.9989 13 6 7.5870 -2.6065 -0.9167 14 7 7.0869 -3.8176 -0.2615 15 6 7.1750 -5.0079 -0.8877 16 8 7.6679 -5.0761 -1.9936 17 6 6.6600 -6.2536 -0.2139 18 16 6.9186 -7.6780 -1.3004 19 6 6.2450 -8.9573 -0.2933 20 1 5.8402 -8.7218 0.6798 21 6 6.2404 -10.2687 -0.7481 22 7 5.7421 -11.2252 0.0065 23 14 6.9411 -10.6760 -2.4311 24 1 8.3875 -10.9877 -2.3029 25 1 6.2292 -11.8523 -2.9923 26 1 6.7639 -9.5122 -3.3361 27 6 2.2633 -1.0934 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9258 2.1221 0.0004 32 1 6.6104 0.9118 0.9976 33 1 5.8949 1.1593 -0.6547 34 1 8.6619 0.3807 -0.2359 35 1 7.7285 -0.0667 -1.7295 36 1 8.6516 -2.7180 -1.1225 37 1 7.0502 -2.4517 -1.8527 38 1 6.6930 -3.7630 0.6232 39 1 5.5953 -6.1421 -0.0088 40 1 7.1961 -6.4084 0.7224 41 1 5.7386 -12.1416 -0.3115 42 1 1.9421 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747625682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:35 Heat of formation + Delta-G solvation = 34.046768 kcal Electronic energy + Delta-G solvation = -26146.277385 eV Core-core repulsion = 22255.482417 eV Total energy + Delta-G solvation = -3890.794968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50643 -40.46899 -38.75364 -37.66641 -34.59620 -34.12338 -32.33572 -30.67140 -30.00871 -29.62124 -27.63353 -27.44173 -25.49981 -23.85433 -23.21400 -21.70382 -21.24588 -20.19724 -19.16645 -17.97416 -17.65401 -16.66398 -16.50218 -16.20066 -16.10732 -15.87549 -15.01761 -14.98259 -14.81141 -14.54046 -14.18045 -14.09506 -13.71944 -13.62718 -13.30239 -13.25409 -13.09123 -12.69979 -12.63112 -12.59161 -12.24777 -11.74475 -11.61863 -11.26852 -11.14150 -10.91794 -10.61797 -10.44712 -10.17085 -9.95423 -9.75361 -9.26505 -9.05102 -8.90466 -8.76961 -8.64143 -8.35737 -6.77815 -6.19087 -3.88656 1.32486 2.09747 2.18372 2.65377 2.95286 3.26254 3.39321 3.40790 3.49336 3.59684 3.83474 3.99048 4.14887 4.19688 4.39507 4.42977 4.53917 4.55594 4.67709 4.78402 4.82177 4.89081 4.98704 5.07739 5.14000 5.19982 5.30248 5.38136 5.54282 5.56382 5.63340 5.79432 5.83441 5.99008 6.03627 6.14315 6.26178 6.60797 6.81053 7.39051 7.57084 7.91909 8.04615 8.16578 8.52755 8.77753 9.27633 10.90385 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002605 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.429314 B =10746.507891 C =12371.859257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.461 5.461 3 C 0.180 3.820 4 N -0.461 5.461 5 C -0.057 4.057 6 C 0.620 3.380 7 O -0.525 6.525 8 N -0.631 5.631 9 C 0.118 3.882 10 C -0.147 4.147 11 C 0.124 3.876 12 H 0.101 0.899 13 C 0.124 3.876 14 N -0.719 5.719 15 C 0.535 3.465 16 O -0.531 6.531 17 C -0.119 4.119 18 S -0.145 6.145 19 C -0.517 4.517 20 H 0.087 0.913 21 C 0.094 3.906 22 N -0.884 5.884 23 Si 0.857 3.143 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.235 1.235 27 C 0.036 3.964 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.210 0.790 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.269 0.731 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 32.914 2.841 33.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.104 4.104 4 N -0.180 5.180 5 C -0.186 4.186 6 C 0.409 3.591 7 O -0.400 6.400 8 N -0.367 5.367 9 C -0.005 4.005 10 C -0.186 4.186 11 C 0.021 3.979 12 H 0.118 0.882 13 C -0.001 4.001 14 N -0.373 5.373 15 C 0.321 3.679 16 O -0.407 6.407 17 C -0.270 4.270 18 S 0.081 5.919 19 C -0.664 4.664 20 H 0.105 0.895 21 C -0.114 4.114 22 N -0.521 5.521 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.159 1.159 27 C -0.103 4.103 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.227 0.773 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.251 32.373 1.029 32.987 hybrid contribution -1.552 -0.695 1.255 2.113 sum -7.803 31.678 2.283 32.705 Atomic orbital electron populations 1.22171 0.75674 1.05287 1.04154 1.45345 1.08343 1.06922 1.53679 1.25194 0.85306 0.93577 1.06280 1.70617 1.19271 1.10456 1.17694 1.20471 0.92885 0.90447 1.14786 1.16570 0.80577 0.86055 0.75881 1.90877 1.85710 1.12875 1.50548 1.49880 1.03845 1.09458 1.73556 1.23053 0.91801 0.84707 1.00912 1.23615 0.98533 0.94433 1.02002 1.23161 0.80286 0.94829 0.99603 0.88162 1.21389 0.99911 0.83042 0.95768 1.45751 1.63744 1.06165 1.21669 1.20145 0.77932 0.84100 0.85729 1.90666 1.44227 1.86223 1.19552 1.23235 1.04712 0.95796 1.03250 1.84700 1.81447 0.99309 1.26444 1.22352 1.45589 0.92840 1.05665 0.89454 1.24717 0.93984 0.95064 0.97663 1.69952 1.44193 1.00786 1.37136 0.86721 0.79973 0.80176 0.84904 1.19261 1.20079 1.15895 1.22688 0.90200 0.93370 1.04088 0.89995 0.88996 0.89078 0.77323 0.90002 0.88989 0.89273 0.88546 0.90348 0.91329 0.76320 0.88382 0.88846 0.92080 0.79351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.15 59.85 0.67 0.82 16 2 N -0.46 -3.02 3.13 -125.78 -0.39 -3.41 16 3 C 0.18 1.23 12.55 -89.91 -1.13 0.10 16 4 N -0.46 -4.65 9.68 -11.03 -0.11 -4.76 16 5 C -0.06 -0.68 6.93 -83.09 -0.58 -1.25 16 6 C 0.62 8.56 7.94 -12.56 -0.10 8.46 16 7 O -0.52 -8.86 14.99 5.26 0.08 -8.78 16 8 N -0.63 -6.99 3.49 -172.48 -0.60 -7.59 16 9 C 0.12 0.90 7.88 -2.97 -0.02 0.87 16 10 C -0.15 -0.96 7.86 -25.79 -0.20 -1.16 16 11 C 0.12 1.18 4.28 -66.85 -0.29 0.89 16 12 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 13 C 0.12 1.63 5.32 -4.05 -0.02 1.61 16 14 N -0.72 -11.57 4.27 -60.30 -0.26 -11.82 16 15 C 0.53 11.06 7.85 -10.99 -0.09 10.98 16 16 O -0.53 -12.74 15.86 5.56 0.09 -12.65 16 17 C -0.12 -2.64 6.16 36.01 0.22 -2.42 16 18 S -0.15 -3.97 18.55 -107.50 -1.99 -5.97 16 19 C -0.52 -15.73 10.04 30.94 0.31 -15.41 16 20 H 0.09 2.77 8.03 -52.49 -0.42 2.35 16 21 C 0.09 2.86 5.50 -17.43 -0.10 2.77 16 22 N -0.88 -27.67 13.97 55.49 0.78 -26.89 16 23 Si 0.86 22.76 27.73 -169.99 -4.71 18.04 16 24 H -0.27 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.24 -6.26 6.74 56.52 0.38 -5.88 16 27 C 0.04 0.35 11.26 -16.64 -0.19 0.16 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.21 0.54 8.06 -52.48 -0.42 0.12 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.73 7.47 -51.93 -0.39 0.34 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.40 5.99 7.54 -40.82 -0.31 5.68 16 39 H 0.10 2.14 8.14 -51.92 -0.42 1.72 16 40 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 41 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 42 H 0.19 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -40.77 374.33 -8.76 -49.53 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.77 Total: 2.26 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.51 Total: 6.41 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.58 Total: -54.48 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.17 Total: -21.43 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.04 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -1.99 Total: -5.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.77 -8.76 -49.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747625682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.574 kcal (2) G-P(sol) polarization free energy of solvation -40.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds