Wall clock time and date at job start Tue Mar 31 2020 20:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35842 * 126.13573 * 2 1 4 4 N 1.30173 * 109.00187 * 179.76082 * 3 2 1 5 5 C 1.35750 * 108.86646 * 0.38257 * 4 3 2 6 6 C 1.47329 * 126.23417 * 179.88526 * 5 4 3 7 7 O 1.21621 * 119.99949 * 179.69441 * 6 5 4 8 8 N 1.34775 * 119.99774 * 359.68158 * 6 5 4 9 9 C 1.47582 * 134.49667 * 0.02562 * 8 6 5 10 10 C 1.53948 * 86.11463 * 204.63213 * 9 8 6 11 11 C 1.47588 * 134.48736 * 179.97438 * 8 6 5 12 12 H 1.09002 * 113.87145 * 269.67619 * 11 8 6 13 13 C 1.52996 * 113.76871 * 41.06853 * 11 8 6 14 14 N 1.46497 * 109.47359 * 281.49140 * 13 11 8 15 15 C 1.34778 * 120.00309 * 180.02562 * 14 13 11 16 16 O 1.21276 * 119.99491 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99778 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.46742 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99907 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99832 * 180.27629 * 19 18 17 22 22 N 1.31631 * 119.99781 * 179.72124 * 21 19 18 23 23 Si 1.86800 * 119.99986 * 359.71904 * 21 19 18 24 24 H 1.48510 * 109.47082 * 90.00406 * 23 21 19 25 25 H 1.48504 * 109.47159 * 210.00067 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00310 * 23 21 19 27 27 C 1.35380 * 126.13522 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47286 * 269.99875 * 1 2 3 29 29 H 1.09001 * 109.47352 * 29.99636 * 1 2 3 30 30 H 1.09001 * 109.47495 * 150.00125 * 1 2 3 31 31 H 1.08005 * 125.50010 * 0.02562 * 3 2 1 32 32 H 1.08996 * 113.76953 * 90.32803 * 9 8 6 33 33 H 1.09000 * 113.86221 * 318.94106 * 9 8 6 34 34 H 1.08999 * 113.73666 * 222.04347 * 10 9 8 35 35 H 1.08996 * 113.84224 * 90.74839 * 10 9 8 36 36 H 1.09000 * 109.46959 * 161.49119 * 13 11 8 37 37 H 1.09006 * 109.47312 * 41.49180 * 13 11 8 38 38 H 0.97005 * 119.99622 * 359.97438 * 14 13 11 39 39 H 1.09000 * 109.47396 * 59.99696 * 17 15 14 40 40 H 1.09001 * 109.47080 * 299.99119 * 17 15 14 41 41 H 0.97000 * 119.99427 * 179.97438 * 22 21 19 42 42 H 1.08002 * 126.56010 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0051 5 6 3.5511 -0.6433 0.0000 6 6 4.7652 -1.4778 0.0009 7 8 4.6698 -2.6902 0.0015 8 7 5.9817 -0.8975 0.0007 9 6 6.4620 0.4979 0.0002 10 6 7.7482 -0.0553 -0.6398 11 6 7.3685 -1.4026 0.0018 12 1 7.7845 -1.5471 0.9989 13 6 7.5870 -2.6065 -0.9167 14 7 7.0869 -3.8176 -0.2615 15 6 7.1750 -5.0079 -0.8877 16 8 7.6679 -5.0761 -1.9936 17 6 6.6600 -6.2536 -0.2139 18 16 6.9186 -7.6780 -1.3004 19 6 6.2450 -8.9573 -0.2933 20 1 5.8402 -8.7218 0.6798 21 6 6.2404 -10.2687 -0.7481 22 7 5.7421 -11.2252 0.0065 23 14 6.9411 -10.6760 -2.4311 24 1 8.3875 -10.9877 -2.3029 25 1 6.2292 -11.8523 -2.9923 26 1 6.7639 -9.5122 -3.3361 27 6 2.2633 -1.0934 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9258 2.1221 0.0004 32 1 6.6104 0.9118 0.9976 33 1 5.8949 1.1593 -0.6547 34 1 8.6619 0.3807 -0.2359 35 1 7.7285 -0.0667 -1.7295 36 1 8.6516 -2.7180 -1.1225 37 1 7.0502 -2.4517 -1.8527 38 1 6.6930 -3.7630 0.6232 39 1 5.5953 -6.1421 -0.0088 40 1 7.1961 -6.4084 0.7224 41 1 5.7386 -12.1416 -0.3115 42 1 1.9421 -2.1245 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747625682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:34 Heat of formation + Delta-G solvation = 4.839032 kcal Electronic energy + Delta-G solvation = -26147.543927 eV Core-core repulsion = 22255.482417 eV Total energy + Delta-G solvation = -3892.061511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.11450 -41.36760 -40.29561 -38.61916 -35.64424 -35.01356 -34.69191 -31.83111 -31.11563 -30.41261 -28.75558 -27.93486 -27.83674 -24.63378 -24.08010 -22.28644 -21.95591 -21.69983 -20.11815 -19.72375 -18.54833 -17.89713 -17.53694 -17.50335 -17.10918 -16.79723 -16.78954 -16.39629 -15.99614 -15.65317 -15.19437 -15.01823 -14.90441 -14.78908 -14.68881 -14.54653 -13.89075 -13.67670 -13.48005 -13.37029 -13.34295 -13.24221 -13.04624 -12.97099 -12.71310 -12.34317 -12.02564 -11.85216 -11.36299 -11.18415 -10.98307 -10.82001 -10.70421 -10.57566 -10.08306 -9.85153 -9.50067 -9.01900 -8.53230 -6.24467 0.56154 0.96391 1.30102 1.44702 1.46971 1.53391 1.59062 1.64817 1.98087 2.23857 2.32391 2.55018 2.70855 2.84401 3.32753 3.49311 3.75036 3.80573 3.90631 3.97798 4.03787 4.10940 4.18981 4.23375 4.36889 4.43043 4.43437 4.46119 4.56331 4.73010 4.76827 4.81809 5.00845 5.03636 5.11446 5.34660 5.43069 5.44470 5.69223 6.08983 6.13273 6.45610 6.69418 6.77600 6.91245 7.17696 7.25867 8.59695 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002605 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.429314 B =10746.507891 C =12371.859257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.455 5.455 3 C 0.193 3.807 4 N -0.485 5.485 5 C -0.090 4.090 6 C 0.606 3.394 7 O -0.574 6.574 8 N -0.637 5.637 9 C 0.121 3.879 10 C -0.127 4.127 11 C 0.121 3.879 12 H 0.122 0.878 13 C 0.122 3.878 14 N -0.698 5.698 15 C 0.537 3.463 16 O -0.568 6.568 17 C -0.108 4.108 18 S -0.169 6.169 19 C -0.531 4.531 20 H 0.058 0.942 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.918 3.082 24 H -0.259 1.259 25 H -0.256 1.256 26 H -0.239 1.239 27 C 0.025 3.975 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.254 0.746 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.409 0.591 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.278 0.722 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 35.956 2.720 36.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.135 5.135 3 C -0.091 4.091 4 N -0.204 5.204 5 C -0.218 4.218 6 C 0.397 3.603 7 O -0.454 6.454 8 N -0.372 5.372 9 C 0.000 4.000 10 C -0.165 4.165 11 C 0.018 3.982 12 H 0.140 0.860 13 C -0.002 4.002 14 N -0.350 5.350 15 C 0.322 3.678 16 O -0.448 6.448 17 C -0.258 4.258 18 S 0.057 5.943 19 C -0.678 4.678 20 H 0.076 0.924 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.739 3.261 24 H -0.183 1.183 25 H -0.180 1.180 26 H -0.163 1.163 27 C -0.116 4.116 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.270 0.730 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.245 0.755 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.154 35.490 0.947 36.032 hybrid contribution -1.695 -1.447 1.400 2.632 sum -7.850 34.044 2.347 35.016 Atomic orbital electron populations 1.22510 0.72972 1.06831 1.05474 1.45588 1.09858 1.05821 1.52281 1.26076 0.84501 0.95084 1.03466 1.70553 1.21270 1.09379 1.19244 1.20441 0.92849 0.91447 1.17050 1.17021 0.81971 0.85864 0.75441 1.90819 1.86636 1.14770 1.53198 1.50141 1.03588 1.11270 1.72197 1.23236 0.91717 0.83039 1.02018 1.23573 0.99475 0.91695 1.01743 1.23400 0.80054 0.94533 1.00206 0.86014 1.21599 0.99961 0.83025 0.95604 1.45638 1.62040 1.05753 1.21585 1.19841 0.77879 0.84822 0.85261 1.90646 1.46373 1.86775 1.20977 1.23209 1.05223 0.94529 1.02888 1.84561 1.81242 1.00684 1.27781 1.22457 1.45908 0.94368 1.05109 0.92374 1.25599 0.94167 0.94861 1.01401 1.70023 1.44978 1.01518 1.39018 0.85827 0.79807 0.80297 0.80179 1.18313 1.17958 1.16328 1.22724 0.90416 0.94240 1.04252 0.88735 0.86157 0.88929 0.73032 0.88160 0.89328 0.85700 0.88881 0.89138 0.93701 0.75452 0.88304 0.87118 0.91260 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.13 11.15 127.77 1.42 1.55 16 2 N -0.46 -5.27 3.13 -551.84 -1.72 -6.99 16 3 C 0.19 2.18 12.55 180.10 2.26 4.44 16 4 N -0.49 -9.25 9.68 -188.82 -1.83 -11.08 16 5 C -0.09 -2.17 6.93 40.51 0.28 -1.89 16 6 C 0.61 17.26 7.94 86.64 0.69 17.95 16 7 O -0.57 -20.41 14.99 -4.10 -0.06 -20.47 16 8 N -0.64 -13.70 3.49 -817.86 -2.85 -16.55 16 9 C 0.12 1.59 7.88 86.48 0.68 2.27 16 10 C -0.13 -1.29 7.86 31.26 0.25 -1.04 16 11 C 0.12 2.09 4.28 45.10 0.19 2.28 16 12 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 13 C 0.12 3.15 5.32 86.38 0.46 3.61 16 14 N -0.70 -22.46 4.27 -463.07 -1.98 -24.44 16 15 C 0.54 22.43 7.85 87.66 0.69 23.12 16 16 O -0.57 -27.62 15.86 -3.02 -0.05 -27.67 16 17 C -0.11 -4.85 6.16 71.24 0.44 -4.41 16 18 S -0.17 -9.38 18.55 -56.49 -1.05 -10.42 16 19 C -0.53 -33.10 10.04 67.95 0.68 -32.41 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.04 2.77 5.50 84.86 0.47 3.24 16 22 N -0.92 -58.13 13.97 21.65 0.30 -57.83 16 23 Si 0.92 47.14 27.73 68.60 1.90 49.05 16 24 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.24 -12.40 6.74 99.48 0.67 -11.73 16 27 C 0.02 0.50 11.26 83.72 0.94 1.44 16 28 H 0.09 0.00 8.14 -2.38 -0.02 -0.01 16 29 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.25 0.26 8.06 -2.91 -0.02 0.23 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.26 7.47 -2.39 -0.02 1.24 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 1.06 8.10 -2.39 -0.02 1.05 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.41 12.18 7.54 -92.70 -0.70 11.48 16 39 H 0.10 4.44 8.14 -2.40 -0.02 4.42 16 40 H 0.11 4.57 8.14 -2.39 -0.02 4.55 16 41 H 0.28 16.18 8.31 -92.71 -0.77 15.40 16 42 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -91.93 374.33 2.43 -89.50 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.31 Total: 16.76 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 9.45 Total: 20.16 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -8.08 Total: -116.88 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.11 Total: -48.15 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.90 Total: 49.05 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.05 Total: -10.42 kcal Total: -91.93 2.43 -89.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747625682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.336 kcal (2) G-P(sol) polarization free energy of solvation -91.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds