Wall clock time and date at job start Tue Mar 31 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34255 * 125.75231 * 2 1 4 4 C 1.38042 * 107.41619 * 180.11299 * 3 2 1 5 5 C 1.47431 * 126.41755 * 179.87267 * 4 3 2 6 6 O 1.21603 * 119.99851 * 359.71179 * 5 4 3 7 7 N 1.34771 * 120.00322 * 179.71392 * 5 4 3 8 8 C 1.46500 * 120.00265 * 175.14739 * 7 5 4 9 9 C 1.52994 * 115.55028 * 294.97068 * 8 7 5 10 10 N 1.46493 * 109.47413 * 277.97199 * 9 8 7 11 11 C 1.34776 * 120.00317 * 185.71035 * 10 9 8 12 12 O 1.21283 * 119.99769 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00354 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47409 * 180.02562 * 13 11 10 15 15 C 1.76203 * 100.00186 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99433 * 0.02562 * 15 14 13 17 17 C 1.38793 * 119.99833 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00262 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99935 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47396 * 89.99845 * 19 17 15 21 21 H 1.48498 * 109.47139 * 210.00265 * 19 17 15 22 22 H 1.48509 * 109.46688 * 329.99862 * 19 17 15 23 23 C 1.52998 * 117.49711 * 80.64044 * 8 7 5 24 24 C 1.53000 * 117.50021 * 149.29838 * 8 7 5 25 25 C 1.41294 * 107.17040 * 359.60700 * 4 3 2 26 26 N 1.30445 * 108.01912 * 0.24347 * 25 4 3 27 27 H 1.08997 * 109.46948 * 270.30504 * 1 2 3 28 28 H 1.08997 * 109.47089 * 30.31005 * 1 2 3 29 29 H 1.09001 * 109.47205 * 150.30665 * 1 2 3 30 30 H 1.07999 * 126.29418 * 359.96230 * 3 2 1 31 31 H 0.97005 * 120.00109 * 355.14039 * 7 5 4 32 32 H 1.09002 * 109.46904 * 37.97258 * 9 8 7 33 33 H 1.09001 * 109.47225 * 157.96980 * 9 8 7 34 34 H 0.97006 * 120.00001 * 5.71149 * 10 9 8 35 35 H 1.09002 * 109.47521 * 300.00585 * 13 11 10 36 36 H 1.09003 * 109.47063 * 60.00345 * 13 11 10 37 37 H 0.97003 * 119.99757 * 179.97438 * 18 17 15 38 38 H 1.08998 * 117.49924 * 215.00335 * 23 8 7 39 39 H 1.09009 * 117.50194 * 0.02629 * 23 8 7 40 40 H 1.09010 * 117.49539 * 359.97438 * 24 8 7 41 41 H 1.09001 * 117.50029 * 144.97425 * 24 8 7 42 42 H 1.07996 * 125.98785 * 180.23858 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6553 -0.0026 5 6 4.7639 1.5061 -0.0062 6 8 4.6526 2.7170 -0.0124 7 7 5.9878 0.9419 -0.0026 8 6 7.1824 1.7827 -0.1135 9 6 7.3401 2.5338 -1.4370 10 7 7.9232 1.6391 -2.4398 11 6 8.2614 2.1167 -3.6538 12 8 8.0836 3.2875 -3.9159 13 6 8.8617 1.1965 -4.6852 14 16 9.2049 2.1283 -6.1985 15 6 9.8790 0.8459 -7.2013 16 1 9.9683 -0.1562 -6.8085 17 6 10.2943 1.1233 -8.4963 18 7 10.1851 2.3445 -8.9751 19 14 11.0084 -0.2364 -9.5597 20 1 9.9158 -0.8980 -10.3171 21 1 11.9900 0.3433 -10.5113 22 1 11.6873 -1.2355 -8.6957 23 6 7.6775 2.4775 1.1565 24 6 8.4568 1.2940 0.5777 25 6 3.5311 -0.7573 0.0051 26 7 2.2827 -1.1356 0.0065 27 1 -0.3633 0.0055 1.0276 28 1 -0.3633 0.8872 -0.5186 29 1 -0.3634 -0.8927 -0.5091 30 1 1.9166 2.1170 -0.0006 31 1 6.0778 -0.0210 0.0734 32 1 6.3634 2.8758 -1.7793 33 1 7.9954 3.3926 -1.2915 34 1 8.0658 0.7028 -2.2301 35 1 9.7903 0.7753 -4.2999 36 1 8.1611 0.3910 -4.9051 37 1 10.4757 2.5385 -9.8800 38 1 8.1156 3.4697 1.0491 39 1 7.1147 2.3087 2.0747 40 1 8.4063 0.3471 1.1154 41 1 9.4077 1.5073 0.0894 42 1 4.3919 -1.4096 0.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747758721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:15 Heat of formation + Delta-G solvation = 35.411214 kcal Electronic energy + Delta-G solvation = -25597.494476 eV Core-core repulsion = 21706.758675 eV Total energy + Delta-G solvation = -3890.735802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75515 -40.10083 -38.85850 -37.42946 -34.08895 -33.80371 -32.87515 -32.40498 -30.65911 -29.69545 -27.62194 -26.35782 -25.39006 -23.73144 -22.82822 -21.62003 -20.79505 -20.23320 -19.81019 -18.36829 -17.85710 -16.83930 -16.29406 -16.18960 -16.07449 -15.64492 -15.08717 -14.96913 -14.87073 -14.78149 -14.55968 -14.09264 -13.87017 -13.39055 -13.17349 -13.12255 -13.06718 -12.96606 -12.64860 -12.47798 -11.83556 -11.72333 -11.51299 -11.18205 -11.04593 -11.00144 -10.75188 -10.65057 -10.04123 -10.00906 -9.79703 -9.46914 -9.23478 -9.04734 -9.01858 -8.79678 -8.19810 -6.46823 -6.19192 -3.89432 1.16098 1.79068 1.89039 2.81124 2.98421 3.17102 3.20193 3.23825 3.27455 3.31459 3.47976 3.85907 3.97669 4.22678 4.31012 4.33285 4.50734 4.58327 4.60396 4.64264 4.76802 4.88278 5.03980 5.14821 5.15819 5.23280 5.32584 5.40861 5.56158 5.62040 5.71349 5.81000 5.92665 5.94371 5.99111 6.17176 6.32983 6.34842 6.66151 7.07667 7.29012 7.61741 7.77661 8.08354 8.37537 8.68268 9.25956 10.88201 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.002270 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.336043 B =12333.673070 C =13585.821100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.131 3.869 4 C -0.295 4.295 5 C 0.600 3.400 6 O -0.536 6.536 7 N -0.697 5.697 8 C 0.089 3.911 9 C 0.154 3.846 10 N -0.735 5.735 11 C 0.531 3.469 12 O -0.517 6.517 13 C -0.152 4.152 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.157 4.157 24 C -0.166 4.166 25 C 0.082 3.918 26 N -0.297 5.297 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.190 0.810 31 H 0.400 0.600 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 -7.486 25.044 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.021 4.021 4 C -0.310 4.310 5 C 0.388 3.612 6 O -0.413 6.413 7 N -0.349 5.349 8 C 0.001 3.999 9 C 0.029 3.971 10 N -0.390 5.390 11 C 0.317 3.683 12 O -0.391 6.391 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.196 4.196 24 C -0.204 4.204 25 C -0.106 4.106 26 N -0.117 5.117 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.207 0.793 31 H 0.236 0.764 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.292 -5.527 24.422 29.873 hybrid contribution 1.192 -2.561 -0.253 2.836 sum -15.100 -8.088 24.168 29.623 Atomic orbital electron populations 1.22031 0.73256 1.05264 1.03968 1.48444 1.07372 1.03824 1.54615 1.23012 0.90082 0.93848 0.95110 1.20223 0.93432 0.93496 1.23833 1.17202 0.81866 0.86982 0.75172 1.90804 1.86612 1.14025 1.49815 1.45070 1.04001 1.09731 1.76077 1.20740 0.86019 0.99128 0.93992 1.20918 0.99915 0.91819 0.84419 1.45972 1.66211 1.12982 1.13824 1.20300 0.77373 0.88830 0.81841 1.90713 1.52494 1.17369 1.78517 1.23518 1.03045 1.02580 1.01113 1.85425 1.81138 1.14039 1.02775 1.22866 1.47882 0.96734 1.00816 0.90955 1.24994 0.95403 0.96297 0.96948 1.70022 1.44697 1.18888 1.16671 0.86172 0.78777 0.80893 0.79667 1.20305 1.20767 1.19706 1.23346 1.02115 0.97761 0.96381 1.23372 0.94900 0.99476 1.02663 1.24059 0.95410 0.93826 0.97292 1.77196 1.01931 1.07878 1.24685 0.90119 0.88820 0.88706 0.79337 0.76441 0.90411 0.90207 0.77016 0.89252 0.89340 0.92207 0.87600 0.88182 0.87969 0.87107 0.79356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.44 59.85 0.68 1.01 16 2 N -0.36 -2.81 3.98 -67.60 -0.27 -3.08 16 3 C 0.13 1.09 11.30 -16.56 -0.19 0.90 16 4 C -0.29 -2.80 6.13 -105.06 -0.64 -3.44 16 5 C 0.60 6.68 7.54 -12.52 -0.09 6.58 16 6 O -0.54 -7.90 16.02 5.27 0.08 -7.82 16 7 N -0.70 -5.94 5.44 -48.67 -0.26 -6.21 16 8 C 0.09 0.84 1.68 -131.82 -0.22 0.62 16 9 C 0.15 2.04 5.64 -4.05 -0.02 2.02 16 10 N -0.74 -10.12 5.49 -60.30 -0.33 -10.45 16 11 C 0.53 10.18 7.85 -10.99 -0.09 10.09 16 12 O -0.52 -12.20 15.85 5.55 0.09 -12.12 16 13 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 C -0.16 -1.32 10.11 -26.70 -0.27 -1.59 16 24 C -0.17 -1.15 10.12 -26.70 -0.27 -1.42 16 25 C 0.08 0.67 11.51 -16.98 -0.20 0.47 16 26 N -0.30 -2.82 12.50 30.86 0.39 -2.44 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.19 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.40 2.20 7.80 -40.82 -0.32 1.88 16 32 H 0.08 1.26 7.09 -51.93 -0.37 0.89 16 33 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 34 H 0.40 4.19 8.48 -40.82 -0.35 3.85 16 35 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.11 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 40 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.19 0.87 7.51 -52.49 -0.39 0.48 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -39.87 384.57 -7.51 -47.38 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.61 Total: 2.63 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.89 Total: -0.67 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.25 Total: -47.83 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.87 -7.51 -47.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747758721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.787 kcal (2) G-P(sol) polarization free energy of solvation -39.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds