Wall clock time and date at job start Tue Mar 31 2020 20:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00178 * 2 1 4 4 C 1.53006 * 109.47197 * 89.99858 * 3 2 1 5 5 C 1.52998 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47137 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00039 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99917 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.46842 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99839 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99759 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00408 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99633 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47447 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47033 * 120.00141 * 15 13 11 18 18 H 1.48506 * 109.47229 * 239.99766 * 15 13 11 19 19 C 1.34779 * 119.99915 * 180.27467 * 2 1 3 20 20 O 1.21463 * 119.99958 * 185.25865 * 19 2 1 21 21 C 1.48538 * 119.99933 * 5.25702 * 19 2 1 22 22 N 1.32458 * 119.18527 * 6.50273 * 21 19 2 23 23 C 1.32111 * 120.76933 * 179.71719 * 22 21 19 24 24 C 1.38807 * 119.15986 * 0.54337 * 23 22 21 25 25 C 1.38796 * 118.50854 * 359.72961 * 24 23 22 26 26 N 1.32111 * 119.16049 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.46743 * 95.38836 * 1 2 3 28 28 H 1.08993 * 109.47209 * 215.39354 * 1 2 3 29 29 H 1.09000 * 109.46736 * 335.39428 * 1 2 3 30 30 H 1.08997 * 109.47358 * 210.00328 * 3 2 1 31 31 H 1.09004 * 109.47121 * 330.00172 * 3 2 1 32 32 H 1.08999 * 109.46731 * 300.00051 * 4 3 2 33 33 H 1.08994 * 109.46953 * 59.99945 * 4 3 2 34 34 H 1.08997 * 109.47322 * 300.00436 * 5 4 3 35 35 H 1.09007 * 109.47043 * 59.99785 * 5 4 3 36 36 H 0.97001 * 119.99719 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.46813 * 299.99721 * 9 7 6 38 38 H 1.09004 * 109.46909 * 59.99904 * 9 7 6 39 39 H 0.97002 * 120.00262 * 179.97438 * 14 13 11 40 40 H 1.08002 * 120.42204 * 180.27283 * 23 22 21 41 41 H 1.08000 * 120.74084 * 179.75322 * 24 23 22 42 42 H 1.08002 * 120.41878 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2171 3.0357 1.4425 6 7 3.4618 3.4583 2.8237 7 6 4.1235 4.6063 3.0700 8 8 4.5169 5.2893 2.1481 9 6 4.3747 5.0414 4.4908 10 16 5.2792 6.6091 4.4908 11 6 5.4330 6.8736 6.2260 12 1 5.0195 6.1570 6.9202 13 6 6.0855 8.0030 6.7007 14 7 6.5890 8.8766 5.8546 15 14 6.2479 8.2837 8.5403 16 1 5.6018 7.1640 9.2709 17 1 7.6857 8.3486 8.9061 18 1 5.5859 9.5617 8.9064 19 6 2.1389 -1.1672 -0.0056 20 8 3.3497 -1.1699 0.0908 21 6 1.4009 -2.4503 -0.1296 22 7 0.0974 -2.4256 -0.3638 23 6 -0.5888 -3.5480 -0.4853 24 6 0.0712 -4.7619 -0.3531 25 6 1.4363 -4.7499 -0.1024 26 7 2.0614 -3.5908 0.0025 27 1 -0.3633 -0.0965 -1.0231 28 1 -0.3633 -0.8377 0.5952 29 1 -0.3633 0.9344 0.4279 30 1 3.1500 1.1384 -0.5139 31 1 1.6085 2.0284 -0.5138 32 1 1.5002 1.8407 1.9563 33 1 3.0416 0.9508 1.9564 34 1 4.1694 2.9058 0.9285 35 1 2.6276 3.7952 0.9287 36 1 3.1468 2.9122 3.5610 37 1 3.4223 5.1709 5.0048 38 1 4.9645 4.2820 5.0044 39 1 7.0447 9.6661 6.1864 40 1 -1.6507 -3.5214 -0.6806 41 1 -0.4654 -5.6948 -0.4436 42 1 1.9807 -5.6765 0.0055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758336645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:28 Heat of formation + Delta-G solvation = -31.539917 kcal Electronic energy + Delta-G solvation = -24900.993631 eV Core-core repulsion = 21007.354610 eV Total energy + Delta-G solvation = -3893.639020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.35602 -40.72418 -40.41921 -37.46262 -36.18720 -34.82718 -34.58804 -33.62561 -32.65055 -30.67421 -27.94039 -27.73974 -27.36924 -25.55279 -25.17205 -23.00469 -21.90811 -21.16217 -19.82778 -18.95307 -18.54862 -17.81066 -17.52152 -17.27999 -16.92456 -16.88435 -16.80854 -16.65342 -15.98131 -15.72704 -15.58482 -15.35332 -14.84985 -14.62359 -14.54025 -14.38716 -14.05711 -13.88725 -13.37949 -13.30062 -13.16284 -13.08855 -12.90744 -12.69213 -12.57993 -12.15843 -11.96132 -11.82375 -11.71542 -11.16024 -11.11692 -10.99332 -10.73347 -10.27948 -10.24422 -10.13100 -9.80082 -8.67136 -8.34975 -6.13231 -0.61175 0.07006 1.26135 1.41417 1.45029 1.50541 1.55724 1.60338 1.61317 2.26087 2.31118 2.73968 2.81689 2.99186 3.18306 3.31852 3.65780 3.79616 3.87589 3.93521 3.96718 4.10289 4.15607 4.28449 4.34422 4.42041 4.44100 4.50365 4.56060 4.71299 4.78473 4.87953 5.02454 5.07331 5.15132 5.32353 5.41613 5.42225 5.48477 5.87698 6.11450 6.19907 6.48827 6.73646 6.99545 7.06314 7.22948 8.74619 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.001543 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.239843 B =18141.421163 C =18483.511768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.589 5.589 3 C 0.118 3.882 4 C -0.129 4.129 5 C 0.125 3.875 6 N -0.714 5.714 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.130 4.130 10 S -0.152 6.152 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.272 1.272 19 C 0.569 3.431 20 O -0.553 6.553 21 C 0.254 3.746 22 N -0.488 5.488 23 C 0.132 3.868 24 C -0.180 4.180 25 C 0.127 3.873 26 N -0.514 5.514 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.219 0.781 41 H 0.199 0.801 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.575 -31.949 -12.849 41.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.320 5.320 3 C -0.005 4.005 4 C -0.168 4.168 5 C 0.001 3.999 6 N -0.368 5.368 7 C 0.318 3.682 8 O -0.444 6.444 9 C -0.281 4.281 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.198 1.198 19 C 0.353 3.647 20 O -0.429 6.429 21 C -0.015 4.015 22 N -0.206 5.206 23 C -0.033 4.033 24 C -0.201 4.201 25 C -0.038 4.038 26 N -0.230 5.230 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.252 0.748 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.216 0.784 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -21.704 -29.798 -14.286 39.536 hybrid contribution -0.316 -1.358 2.092 2.514 sum -22.020 -31.156 -12.194 40.054 Atomic orbital electron populations 1.22325 0.75654 1.03849 1.03635 1.47758 1.09327 1.04330 1.70622 1.21516 0.98166 0.84327 0.96453 1.21975 1.01467 0.95010 0.98303 1.21249 0.99985 0.96213 0.82480 1.45744 1.58145 1.23043 1.09850 1.20077 0.77034 0.80949 0.90098 1.90690 1.51708 1.55022 1.46989 1.23376 1.05443 1.02438 0.96852 1.85573 1.72632 1.23311 1.10947 1.23249 1.43111 1.11578 0.91544 0.89907 1.26138 0.93927 0.94415 1.04675 1.70190 1.35934 1.11690 1.36960 0.84888 0.78242 0.78634 0.76054 1.18074 1.19975 1.19774 1.17835 0.85983 0.83271 0.77580 1.90795 1.14981 1.86926 1.50201 1.22473 0.88354 0.92923 0.97754 1.68880 1.06556 1.32901 1.12300 1.24272 1.02787 0.86847 0.89358 1.23703 0.96016 1.02951 0.97479 1.24026 0.93650 0.95848 0.90255 1.68168 1.42307 0.99624 1.12927 0.91171 0.89248 0.89614 0.91180 0.86511 0.88683 0.92215 0.92950 0.90785 0.74779 0.86951 0.87451 0.91966 0.76475 0.78382 0.78182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 9.10 127.77 1.16 2.00 16 2 N -0.59 -10.01 2.87 -849.39 -2.44 -12.45 16 3 C 0.12 1.92 5.35 86.38 0.46 2.38 16 4 C -0.13 -2.18 5.65 30.60 0.17 -2.00 16 5 C 0.12 2.88 5.67 86.38 0.49 3.37 16 6 N -0.71 -18.99 5.56 -463.06 -2.57 -21.56 16 7 C 0.53 20.43 7.85 87.66 0.69 21.11 16 8 O -0.57 -27.08 15.86 -3.04 -0.05 -27.13 16 9 C -0.13 -5.30 6.16 71.24 0.44 -4.87 16 10 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 11 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 12 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 13 C 0.01 0.76 5.49 84.86 0.47 1.22 16 14 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 15 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 16 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C 0.57 13.72 7.69 86.99 0.67 14.39 16 20 O -0.55 -18.14 16.50 -3.60 -0.06 -18.19 16 21 C 0.25 5.03 7.42 137.69 1.02 6.06 16 22 N -0.49 -5.84 6.17 -189.09 -1.17 -7.01 16 23 C 0.13 0.49 11.30 84.79 0.96 1.45 16 24 C -0.18 -0.34 10.18 22.54 0.23 -0.11 16 25 C 0.13 1.15 11.30 84.78 0.96 2.11 16 26 N -0.51 -10.40 10.14 -189.10 -1.92 -12.32 16 27 H 0.07 0.60 7.98 -2.39 -0.02 0.58 16 28 H 0.09 0.90 5.78 -2.39 -0.01 0.89 16 29 H 0.09 0.50 8.03 -2.39 -0.02 0.48 16 30 H 0.07 1.45 7.50 -2.39 -0.02 1.44 16 31 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.42 8.25 8.47 -92.71 -0.79 7.47 16 37 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 38 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 39 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.22 -1.13 8.06 -2.91 -0.02 -1.15 16 41 H 0.20 -1.40 8.06 -2.91 -0.02 -1.43 16 42 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 Total: -1.00 -93.44 379.42 1.57 -91.86 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.27 Total: 10.80 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 8.36 Total: 15.96 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -7.81 Total: -109.77 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.11 Total: -45.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -93.44 1.57 -91.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758336645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.323 kcal (2) G-P(sol) polarization free energy of solvation -93.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds