Wall clock time and date at job start Tue Mar 31 2020 20:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35034 * 124.88993 * 2 1 4 4 C 1.35366 * 107.22881 * 180.02562 * 3 2 1 5 5 C 1.41497 * 105.50248 * 359.97438 * 4 3 2 6 6 C 1.47711 * 126.51668 * 179.97438 * 5 4 3 7 7 O 1.21575 * 119.99964 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00141 * 180.02562 * 6 5 4 9 9 C 1.47588 * 134.49375 * 179.97438 * 8 6 5 10 10 C 1.53939 * 86.11490 * 155.35802 * 9 8 6 11 11 C 1.53006 * 113.74007 * 137.95564 * 10 9 8 12 12 N 1.46504 * 109.46883 * 174.99955 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00067 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46942 * 90.00308 * 21 19 17 23 23 H 1.48495 * 109.47152 * 210.00400 * 21 19 17 24 24 H 1.48503 * 109.46930 * 330.00273 * 21 19 17 25 25 C 1.47580 * 134.49153 * 359.97438 * 8 6 5 26 26 N 1.28474 * 124.87674 * 180.32379 * 2 1 3 27 27 H 1.08996 * 109.47247 * 89.99720 * 1 2 3 28 28 H 1.08997 * 109.47321 * 210.00564 * 1 2 3 29 29 H 1.09002 * 109.46794 * 330.00459 * 1 2 3 30 30 H 1.07991 * 126.38359 * 0.05429 * 3 2 1 31 31 H 1.07993 * 127.24713 * 180.02562 * 4 3 2 32 32 H 1.09003 * 113.76693 * 41.05388 * 9 8 6 33 33 H 1.08998 * 113.76396 * 269.66112 * 9 8 6 34 34 H 1.09005 * 113.74232 * 269.15116 * 10 9 8 35 35 H 1.09001 * 109.47002 * 294.99452 * 11 10 9 36 36 H 1.08993 * 109.46955 * 54.99889 * 11 10 9 37 37 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 38 38 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 39 39 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 40 40 H 0.97001 * 119.99673 * 179.97438 * 20 19 17 41 41 H 1.09012 * 113.76784 * 90.34405 * 25 8 6 42 42 H 1.08992 * 113.77167 * 318.94959 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2374 1.1076 0.0000 4 6 3.5272 0.6969 -0.0006 5 6 3.4739 -0.7170 -0.0003 6 6 4.6271 -1.6401 -0.0013 7 8 5.7596 -1.1980 -0.0029 8 7 4.4239 -2.9724 -0.0014 9 6 5.3086 -4.1537 -0.0027 10 6 4.1295 -4.9073 0.6388 11 6 3.9145 -6.3120 0.0717 12 7 2.8537 -6.9856 0.8249 13 6 2.4903 -8.2421 0.5000 14 8 3.0418 -8.8153 -0.4155 15 6 1.3995 -8.9352 1.2751 16 16 1.1451 -10.5969 0.6042 17 6 -0.1444 -11.1608 1.6643 18 1 -0.5266 -10.5147 2.4407 19 6 -0.6691 -12.4355 1.5015 20 7 -0.2030 -13.2232 0.5555 21 14 -2.0357 -13.0336 2.6258 22 1 -3.3521 -12.6856 2.0332 23 1 -1.9378 -14.5069 2.7835 24 1 -1.9036 -12.3836 3.9545 25 6 3.2272 -3.8361 -0.0003 26 7 2.1996 -1.0540 -0.0060 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.8907 2.1304 0.0008 31 1 4.4109 1.3178 -0.0004 32 1 6.1748 -4.0545 0.6516 33 1 5.5661 -4.5085 -1.0006 34 1 4.1354 -4.8853 1.7286 35 1 3.6261 -6.2403 -0.9770 36 1 4.8389 -6.8832 0.1561 37 1 2.4129 -6.5272 1.5573 38 1 1.6884 -9.0075 2.3236 39 1 0.4751 -8.3639 1.1914 40 1 -0.5694 -14.1141 0.4420 41 1 2.8733 -4.0978 -0.9976 42 1 2.4314 -3.4834 0.6557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759232488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:16 Heat of formation + Delta-G solvation = 50.236831 kcal Electronic energy + Delta-G solvation = -25192.046989 eV Core-core repulsion = 21301.954075 eV Total energy + Delta-G solvation = -3890.092915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.02396 -40.56943 -39.07840 -37.96427 -34.47866 -33.89068 -32.43632 -31.46689 -30.79059 -29.25728 -27.87017 -26.50350 -25.83624 -25.35756 -22.92041 -21.87422 -20.95659 -20.25465 -19.33958 -17.98050 -17.79759 -17.03138 -16.80537 -16.51233 -16.24537 -16.08230 -15.24879 -15.19535 -14.81202 -14.39315 -14.31710 -14.06789 -13.83090 -13.60204 -13.29525 -13.16284 -13.04886 -13.04465 -12.91516 -12.60103 -12.36761 -11.80299 -11.64165 -11.37954 -11.07464 -11.03398 -11.01307 -10.77063 -10.31126 -9.82321 -9.69259 -9.49504 -9.42136 -9.07948 -8.99021 -8.90589 -8.24166 -6.50646 -6.22416 -3.92940 1.21891 1.73280 1.99233 2.49224 3.00087 3.08975 3.13779 3.21432 3.26927 3.30695 3.64103 3.83526 4.05612 4.19623 4.21541 4.35698 4.52155 4.53806 4.65770 4.79073 4.83064 4.89008 5.10190 5.12723 5.16195 5.21788 5.24551 5.31052 5.34308 5.49507 5.55336 5.60999 5.72755 5.88691 5.93986 6.00875 6.13298 6.30206 6.58081 7.31618 7.43288 7.58727 7.68413 7.89764 8.34391 8.59984 9.22905 10.84964 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.001880 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.490088 B =14891.241121 C =16259.181618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.285 5.285 3 C -0.019 4.019 4 C -0.179 4.179 5 C -0.015 4.015 6 C 0.627 3.373 7 O -0.535 6.535 8 N -0.635 5.635 9 C 0.120 3.880 10 C -0.138 4.138 11 C 0.131 3.869 12 N -0.738 5.738 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.117 3.883 26 N -0.256 5.256 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 30.266 0.759 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.162 4.162 4 C -0.207 4.207 5 C -0.175 4.175 6 C 0.415 3.585 7 O -0.410 6.410 8 N -0.370 5.370 9 C -0.002 4.002 10 C -0.157 4.157 11 C 0.007 3.993 12 N -0.393 5.393 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.005 4.005 26 N -0.092 5.092 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.200 0.800 31 H 0.180 0.820 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.467 28.672 -0.879 28.894 hybrid contribution -1.427 1.350 2.065 2.850 sum 2.040 30.022 1.186 30.114 Atomic orbital electron populations 1.22220 0.72929 1.05663 1.04688 1.45487 1.07965 1.03166 1.50724 1.22884 0.90935 0.93839 1.08524 1.21787 0.97423 0.93414 1.08117 1.21827 0.90628 0.93964 1.11065 1.16484 0.86530 0.79620 0.75893 1.90806 1.22808 1.76135 1.51267 1.49735 1.11276 1.03288 1.72709 1.23169 0.94815 0.80714 1.01502 1.23470 0.96795 0.93634 1.01803 1.21207 0.91849 0.90266 0.96017 1.45973 1.40018 1.15868 1.37476 1.20303 0.83411 0.80601 0.83900 1.90709 1.54223 1.64595 1.29593 1.23528 0.98958 1.04893 1.03032 1.85410 1.48570 1.03949 1.45483 1.22864 1.22604 1.02904 1.19985 0.90935 1.24996 0.97202 0.95604 0.95828 1.70018 1.40947 1.08576 1.30710 0.86169 0.81083 0.77960 0.80287 1.20291 1.20760 1.19708 1.23369 0.89859 0.85864 1.01453 1.73586 1.02940 1.13950 1.18751 0.89528 0.88308 0.88498 0.79988 0.81994 0.89330 0.88909 0.87186 0.90990 0.90785 0.76764 0.89216 0.89229 0.92183 0.89204 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 11.31 59.85 0.68 0.89 16 2 N -0.29 -1.97 3.70 -68.13 -0.25 -2.22 16 3 C -0.02 -0.12 11.46 -17.17 -0.20 -0.32 16 4 C -0.18 -1.61 10.81 -39.37 -0.43 -2.04 16 5 C -0.02 -0.17 7.09 -82.76 -0.59 -0.75 16 6 C 0.63 7.96 8.06 -12.39 -0.10 7.86 16 7 O -0.54 -8.31 17.65 5.30 0.09 -8.22 16 8 N -0.64 -6.56 3.61 -179.54 -0.65 -7.21 16 9 C 0.12 1.00 8.40 -2.97 -0.02 0.97 16 10 C -0.14 -1.03 3.94 -89.69 -0.35 -1.39 16 11 C 0.13 1.31 5.53 -4.04 -0.02 1.29 16 12 N -0.74 -8.83 5.56 -60.29 -0.33 -9.16 16 13 C 0.53 9.42 7.85 -10.98 -0.09 9.34 16 14 O -0.52 -11.37 15.86 5.56 0.09 -11.28 16 15 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.12 0.96 7.46 -2.97 -0.02 0.94 16 26 N -0.26 -2.50 10.40 33.42 0.35 -2.15 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 -0.01 8.13 -51.93 -0.42 -0.43 16 30 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 31 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.73 7.89 -51.92 -0.41 0.32 16 42 H 0.09 0.73 7.52 -51.93 -0.39 0.34 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -39.33 381.65 -7.92 -47.25 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.74 Total: -1.09 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.72 Total: 1.24 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.15 Total: -45.97 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.18 Total: -19.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.33 -7.92 -47.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759232488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.490 kcal (2) G-P(sol) polarization free energy of solvation -39.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds