Wall clock time and date at job start Tue Mar 31 2020 20:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34491 * 126.47316 * 2 1 4 4 N 1.30857 * 109.16360 * 179.97438 * 3 2 1 5 5 C 1.33316 * 109.68411 * 359.77050 * 4 3 2 6 6 C 1.36664 * 107.78585 * 0.37262 * 5 4 3 7 7 C 1.46768 * 126.84183 * 179.89748 * 6 5 4 8 8 O 1.21684 * 119.99912 * 185.62071 * 7 6 5 9 9 N 1.34776 * 120.00164 * 5.62638 * 7 6 5 10 10 C 1.47072 * 136.05995 * 5.17419 * 9 7 6 11 11 C 1.53495 * 87.98498 * 152.84705 * 10 9 7 12 12 C 1.47069 * 136.05808 * 185.13028 * 9 7 6 13 13 H 1.09000 * 113.46295 * 92.31457 * 12 9 7 14 14 C 1.52998 * 113.46540 * 321.93613 * 12 9 7 15 15 N 1.46499 * 109.47572 * 63.10052 * 14 12 9 16 16 C 1.34770 * 120.00264 * 186.57528 * 15 14 12 17 17 O 1.21287 * 119.99678 * 359.73203 * 16 15 14 18 18 C 1.50700 * 120.00394 * 179.72686 * 16 15 14 19 19 S 1.80999 * 109.47320 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99847 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00452 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99824 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00191 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00059 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47519 * 89.99356 * 24 22 20 26 26 H 1.48498 * 109.46903 * 209.99916 * 24 22 20 27 27 H 1.48504 * 109.46654 * 329.99469 * 24 22 20 28 28 H 1.08999 * 109.47493 * 264.47995 * 1 2 3 29 29 H 1.09001 * 109.47329 * 24.48212 * 1 2 3 30 30 H 1.09002 * 109.47257 * 144.48595 * 1 2 3 31 31 H 1.07996 * 125.41635 * 0.02562 * 3 2 1 32 32 H 1.08009 * 126.10793 * 180.27345 * 5 4 3 33 33 H 1.08993 * 113.46793 * 267.63576 * 10 9 7 34 34 H 1.09008 * 113.46213 * 38.00917 * 10 9 7 35 35 H 1.08998 * 114.20904 * 272.48487 * 11 10 9 36 36 H 1.08998 * 114.20155 * 139.65710 * 11 10 9 37 37 H 1.09007 * 109.46885 * 303.09889 * 14 12 9 38 38 H 1.09005 * 109.46795 * 183.10399 * 14 12 9 39 39 H 0.97000 * 119.99489 * 6.31125 * 15 14 12 40 40 H 1.09000 * 109.46831 * 300.00736 * 18 16 15 41 41 H 1.09001 * 109.47015 * 59.99995 * 18 16 15 42 42 H 0.96998 * 119.99886 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6921 0.0006 5 6 3.5690 -0.6399 0.0060 6 6 2.2861 -1.1109 0.0005 7 6 1.8648 -2.5168 0.0014 8 8 0.6861 -2.7988 -0.1072 9 7 2.7835 -3.4955 0.1225 10 6 4.2331 -3.5637 0.3613 11 6 4.0098 -4.9462 0.9897 12 6 2.7774 -4.9654 0.0749 13 1 2.9786 -5.3683 -0.9177 14 6 1.5434 -5.5910 0.7281 15 7 0.3427 -5.1833 -0.0056 16 6 -0.8777 -5.5059 0.4666 17 8 -0.9817 -6.1379 1.4965 18 6 -2.1129 -5.0812 -0.2849 19 16 -3.5842 -5.6598 0.5964 20 6 -4.8427 -5.0435 -0.4717 21 1 -4.5743 -4.4930 -1.3612 22 6 -6.1792 -5.2646 -0.1692 23 7 -6.5065 -5.9352 0.9152 24 14 -7.5136 -4.6106 -1.3012 25 1 -7.8344 -5.6321 -2.3302 26 1 -8.7316 -4.3081 -0.5073 27 1 -7.0354 -3.3717 -1.9657 28 1 -0.3634 -0.0989 1.0229 29 1 -0.3634 0.9353 -0.4259 30 1 -0.3634 -0.8365 -0.5970 31 1 1.9288 2.1080 0.0004 32 1 4.4672 -1.2396 0.0118 33 1 4.8230 -3.5932 -0.5547 34 1 4.5919 -2.8167 1.0696 35 1 3.7760 -4.9210 2.0540 36 1 4.7703 -5.6829 0.7306 37 1 1.4693 -5.2539 1.7621 38 1 1.6317 -6.6773 0.7056 39 1 0.4260 -4.6779 -0.8293 40 1 -2.1378 -3.9940 -0.3582 41 1 -2.0955 -5.5125 -1.2859 42 1 -7.4404 -6.0900 1.1263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759815555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:15 Heat of formation + Delta-G solvation = 46.402233 kcal Electronic energy + Delta-G solvation = -26826.955096 eV Core-core repulsion = 22936.695900 eV Total energy + Delta-G solvation = -3890.259195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53007 -40.85496 -38.66986 -37.98385 -34.36220 -34.17250 -32.37149 -31.48225 -29.89956 -29.25481 -27.60058 -27.31448 -25.41783 -24.00355 -23.42537 -21.87767 -21.26883 -20.14951 -19.36294 -17.97349 -17.64297 -16.85054 -16.65701 -16.23578 -16.09434 -15.89112 -15.00666 -14.93505 -14.75618 -14.48483 -14.24690 -14.04010 -13.88291 -13.70570 -13.22248 -13.11856 -12.99144 -12.90619 -12.76442 -12.49367 -12.24695 -11.97412 -11.56701 -11.14808 -11.02389 -10.96339 -10.70831 -10.65111 -10.09028 -10.00450 -9.73998 -9.21073 -9.17093 -9.01368 -8.91698 -8.56285 -8.13424 -6.41095 -6.15963 -3.84854 1.01092 1.97087 2.51996 2.66904 3.03526 3.17745 3.24777 3.31035 3.34133 3.40084 3.75035 3.97935 4.00509 4.26464 4.26709 4.43156 4.51084 4.64613 4.70889 4.74798 4.85855 4.92320 5.00065 5.01296 5.16139 5.18779 5.27563 5.36042 5.38784 5.56717 5.63942 5.77447 5.89176 5.95245 6.08283 6.13194 6.33614 6.68762 6.86044 7.28160 7.51843 7.65112 7.82335 8.01994 8.41230 8.86716 9.29105 10.91536 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.003042 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.935105 B = 9201.229178 C =11063.789770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.424 5.424 3 C 0.205 3.795 4 N -0.500 5.500 5 C 0.032 3.968 6 C -0.080 4.080 7 C 0.619 3.381 8 O -0.519 6.519 9 N -0.636 5.636 10 C 0.093 3.907 11 C -0.143 4.143 12 C 0.126 3.874 13 H 0.104 0.896 14 C 0.118 3.882 15 N -0.718 5.718 16 C 0.537 3.463 17 O -0.531 6.531 18 C -0.146 4.146 19 S -0.064 6.064 20 C -0.532 4.532 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.273 1.273 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.213 0.787 32 H 0.177 0.823 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.723 9.914 -3.670 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.103 5.103 3 C -0.077 4.077 4 N -0.218 5.218 5 C -0.123 4.123 6 C -0.197 4.197 7 C 0.409 3.591 8 O -0.395 6.395 9 N -0.372 5.372 10 C -0.030 4.030 11 C -0.181 4.181 12 C 0.023 3.977 13 H 0.121 0.879 14 C -0.007 4.007 15 N -0.375 5.375 16 C 0.324 3.676 17 O -0.407 6.407 18 C -0.296 4.296 19 S 0.163 5.837 20 C -0.681 4.681 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.229 0.771 32 H 0.194 0.806 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.239 0.761 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.040 9.365 -1.936 26.804 hybrid contribution -1.393 1.089 -2.353 2.943 sum 23.647 10.454 -4.289 26.208 Atomic orbital electron populations 1.22360 0.74574 1.05548 1.05193 1.45327 1.08638 1.05680 1.50682 1.25165 0.85539 0.93703 1.03301 1.70158 1.19116 1.12115 1.20436 1.22780 0.95250 0.91316 1.02916 1.20639 0.91512 0.88607 1.18955 1.16231 0.84412 0.82174 0.76320 1.90850 1.15923 1.82685 1.50027 1.49318 1.09078 1.06489 1.72362 1.23155 0.81761 0.97611 1.00429 1.23467 0.96991 0.97096 1.00595 1.23094 0.95534 0.79073 0.99998 0.87879 1.21443 0.83400 0.99196 0.96709 1.45925 1.04542 1.58535 1.28451 1.20147 0.83998 0.78412 0.85086 1.90671 1.86588 1.39476 1.24006 1.23447 0.98270 1.04692 1.03215 1.85322 0.92243 1.72762 1.33391 1.22878 0.92683 1.41069 1.11441 0.91079 1.24984 0.97924 0.95035 0.95692 1.70028 1.18261 1.38059 1.24057 0.86187 0.80287 0.79127 0.80000 1.20302 1.20789 1.19766 0.89686 0.89090 0.87612 0.77073 0.80571 0.89040 0.89633 0.87987 0.88370 0.91135 0.90677 0.76124 0.89243 0.89827 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 10.61 59.85 0.63 1.21 16 2 N -0.42 -4.29 3.17 -121.98 -0.39 -4.67 16 3 C 0.21 1.82 12.52 -90.58 -1.13 0.69 16 4 N -0.50 -5.39 11.20 -14.43 -0.16 -5.55 16 5 C 0.03 0.31 10.96 -17.48 -0.19 0.12 16 6 C -0.08 -0.88 6.91 -82.14 -0.57 -1.45 16 7 C 0.62 7.40 7.96 -12.81 -0.10 7.30 16 8 O -0.52 -7.79 11.73 5.20 0.06 -7.73 16 9 N -0.64 -5.57 3.56 -178.96 -0.64 -6.20 16 10 C 0.09 0.42 6.71 -8.50 -0.06 0.36 16 11 C -0.14 -0.62 8.02 -26.22 -0.21 -0.83 16 12 C 0.13 0.95 4.13 -72.40 -0.30 0.65 16 13 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 14 C 0.12 1.42 5.60 -4.04 -0.02 1.40 16 15 N -0.72 -11.20 3.69 -60.29 -0.22 -11.42 16 16 C 0.54 11.20 7.85 -10.99 -0.09 11.12 16 17 O -0.53 -13.00 15.84 5.55 0.09 -12.91 16 18 C -0.15 -3.26 6.16 36.01 0.22 -3.04 16 19 S -0.06 -1.83 20.57 -107.50 -2.21 -4.04 16 20 C -0.53 -15.74 9.50 30.94 0.29 -15.45 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.83 13.22 55.49 0.73 -26.09 16 24 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.11 1.17 6.69 -51.93 -0.35 0.82 16 31 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.18 1.21 5.63 -52.48 -0.30 0.91 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.34 6.92 -51.92 -0.36 -0.02 16 35 H 0.10 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.40 5.84 6.59 -40.82 -0.27 5.58 16 40 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 41 H 0.08 1.75 8.14 -51.92 -0.42 1.32 16 42 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -40.03 367.45 -9.29 -49.32 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.45 Total: 2.77 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.62 Total: 4.11 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.67 Total: -53.94 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.15 Total: -20.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.21 Total: -4.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.03 -9.29 -49.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.720 kcal (2) G-P(sol) polarization free energy of solvation -40.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds