Wall clock time and date at job start Tue Mar 31 2020 20:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99759 * 2 1 4 4 O 1.20829 * 120.00313 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99991 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46906 * 300.00363 * 5 3 2 7 7 C 1.50703 * 109.46675 * 60.00215 * 5 3 2 8 8 C 1.38241 * 119.98800 * 79.72684 * 7 5 3 9 9 C 1.38214 * 120.01296 * 179.72111 * 8 7 5 10 10 C 1.38357 * 119.98351 * 0.55271 * 9 8 7 11 11 Cl 1.73598 * 120.01056 * 179.70262 * 10 9 8 12 12 C 1.38353 * 119.97571 * 359.72334 * 10 9 8 13 13 C 1.38214 * 119.98632 * 359.97438 * 12 10 9 14 14 N 1.46901 * 109.47069 * 179.97438 * 5 3 2 15 15 C 1.46897 * 110.99707 * 184.30380 * 14 5 3 16 16 C 1.53239 * 109.34035 * 172.74745 * 15 14 5 17 17 N 1.47080 * 108.51955 * 53.82721 * 16 15 14 18 18 C 1.36942 * 120.87668 * 128.83446 * 17 16 15 19 19 H 1.08002 * 119.99620 * 206.55650 * 18 17 16 20 20 C 1.38808 * 120.00289 * 26.56749 * 18 17 16 21 21 N 1.31623 * 119.99986 * 17.01549 * 20 18 17 22 22 Si 1.86799 * 120.00184 * 197.02297 * 20 18 17 23 23 H 1.48497 * 109.47078 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46957 * 119.99694 * 22 20 18 25 25 H 1.48495 * 109.46952 * 239.99532 * 22 20 18 26 26 C 1.47076 * 118.24162 * 308.82003 * 17 16 15 27 27 C 1.46896 * 110.99952 * 60.00549 * 14 5 3 28 28 H 1.09002 * 109.47101 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47284 * 299.99743 * 1 2 3 30 30 H 1.08998 * 109.47001 * 59.99860 * 1 2 3 31 31 H 1.07997 * 119.98904 * 0.02562 * 8 7 5 32 32 H 1.07995 * 120.00790 * 180.26959 * 9 8 7 33 33 H 1.07994 * 120.00320 * 179.97438 * 12 10 9 34 34 H 1.07999 * 119.99390 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.49632 * 292.70612 * 15 14 5 36 36 H 1.09003 * 109.49579 * 52.78635 * 15 14 5 37 37 H 1.08995 * 109.62590 * 294.12075 * 16 15 14 38 38 H 1.09002 * 109.63061 * 173.53803 * 16 15 14 39 39 H 0.96999 * 120.00250 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.62438 * 291.47577 * 26 17 16 41 41 H 1.08996 * 109.63221 * 170.89512 * 26 17 16 42 42 H 1.09002 * 109.49150 * 307.21241 * 27 14 5 43 43 H 1.08993 * 109.49668 * 67.28824 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1056 0.5916 -1.2296 8 6 4.1004 1.2510 -2.4446 9 6 4.6002 0.6269 -3.5720 10 6 5.0951 -0.6623 -3.4867 11 17 5.7158 -1.4497 -4.9039 12 6 5.0947 -1.3239 -2.2716 13 6 4.6005 -0.6964 -1.1436 14 7 3.9828 2.6837 -0.0002 15 6 5.4435 2.8007 -0.1025 16 6 5.8232 4.2744 -0.2823 17 7 5.2119 5.0506 0.8072 18 6 5.9626 5.9085 1.5659 19 1 5.6629 6.1378 2.5778 20 6 7.1087 6.4837 1.0343 21 7 7.3008 6.4856 -0.2678 22 14 8.3784 7.2547 2.1669 23 1 7.9292 7.1234 3.5762 24 1 9.6805 6.5617 1.9952 25 1 8.5345 8.6923 1.8295 26 6 3.7730 4.8812 1.0600 27 6 3.4741 3.3836 1.1869 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.7104 2.2558 -2.5118 32 1 4.6001 1.1437 -4.5203 33 1 5.4805 -2.3303 -2.2045 34 1 4.5997 -1.2129 -0.1951 35 1 5.9040 2.4148 0.8070 36 1 5.7952 2.2272 -0.9602 37 1 5.4510 4.6339 -1.2416 38 1 6.9074 4.3805 -0.2440 39 1 8.1019 6.8872 -0.6393 40 1 3.2037 5.2991 0.2297 41 1 3.5016 5.3885 1.9857 42 1 2.3973 3.2329 1.2644 43 1 3.9618 2.9896 2.0784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042132373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:33 Heat of formation + Delta-G solvation = -32.316383 kcal Electronic energy + Delta-G solvation = -27812.132212 eV Core-core repulsion = 23884.123064 eV Total energy + Delta-G solvation = -3928.009148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02391 -40.39464 -39.36943 -37.56071 -37.47409 -36.16735 -33.83142 -32.22285 -31.94855 -31.64227 -29.48532 -28.43923 -26.67847 -24.58738 -24.33447 -23.79400 -23.03963 -21.54488 -20.86409 -18.93045 -18.56884 -18.14856 -17.79685 -17.44916 -17.03580 -16.55984 -16.34232 -15.74059 -15.54498 -15.32276 -15.24822 -14.98434 -14.78382 -14.49526 -14.38611 -14.31564 -14.12068 -13.62049 -13.22287 -13.01778 -12.99009 -12.66884 -12.59759 -12.49521 -12.42971 -12.28295 -12.16618 -11.97014 -11.85430 -11.77065 -11.71569 -11.46306 -11.14476 -10.59211 -9.98935 -9.60440 -9.41530 -8.69861 -7.87486 -5.32199 0.02185 0.33760 1.08701 1.15200 1.46751 1.48455 1.54979 1.59277 2.50497 2.54106 2.94374 3.28244 3.45873 3.67474 3.78565 3.80695 3.96671 4.05476 4.23107 4.29570 4.32756 4.35355 4.38722 4.49680 4.55936 4.57402 4.67952 4.69727 4.72428 4.85018 4.99564 5.02152 5.12848 5.18911 5.25575 5.33147 5.35240 5.47554 5.61684 5.67286 5.77490 6.00109 6.04838 6.37018 6.72081 7.13417 7.82839 8.37843 9.19681 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010575 B = 0.003798 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.163231 B = 7370.044055 C = 9477.356282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.474 3.526 4 O -0.510 6.510 5 C 0.135 3.865 6 H 0.103 0.897 7 C -0.086 4.086 8 C -0.084 4.084 9 C -0.120 4.120 10 C -0.034 4.034 11 Cl -0.069 7.069 12 C -0.109 4.109 13 C -0.080 4.080 14 N -0.521 5.521 15 C 0.059 3.941 16 C 0.190 3.810 17 N -0.613 5.613 18 C -0.264 4.264 19 H 0.067 0.933 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.293 1.293 26 C 0.152 3.848 27 C 0.046 3.954 28 H 0.135 0.865 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.030 0.970 36 H 0.084 0.916 37 H -0.003 1.003 38 H 0.061 0.939 39 H 0.250 0.750 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -21.503 -2.844 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.316 3.684 4 O -0.397 6.397 5 C 0.025 3.975 6 H 0.120 0.880 7 C -0.087 4.087 8 C -0.103 4.103 9 C -0.138 4.138 10 C -0.061 4.061 11 Cl -0.041 7.041 12 C -0.127 4.127 13 C -0.099 4.099 14 N -0.248 5.248 15 C -0.070 4.070 16 C 0.064 3.936 17 N -0.337 5.337 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.214 1.214 25 H -0.220 1.220 26 C 0.026 3.974 27 C -0.082 4.082 28 H 0.153 0.847 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.015 0.985 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.027 0.973 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.339 -20.979 -3.438 23.220 hybrid contribution 0.853 0.820 0.698 1.374 sum -8.485 -20.159 -2.741 22.043 Atomic orbital electron populations 1.23561 0.74589 1.05782 1.02448 1.86481 1.24970 1.31891 1.83663 1.23441 0.91366 0.81631 0.71939 1.90627 1.67093 1.36976 1.45054 1.20064 0.87696 0.91091 0.98612 0.87955 1.19398 1.01127 0.95212 0.92958 1.21029 0.97755 0.99813 0.91691 1.21150 0.99275 0.93674 0.99726 1.21123 1.01629 0.94178 0.89137 1.98370 1.85851 1.80146 1.39692 1.21250 1.00023 1.01425 0.89995 1.21215 0.95961 0.92814 0.99878 1.61647 1.12422 1.09165 1.41529 1.22620 0.85445 0.98781 1.00135 1.20592 0.97336 0.86976 0.88743 1.44440 1.03792 1.47501 1.37944 1.19566 1.05650 1.20018 0.94203 0.91488 1.25772 1.02426 0.99537 0.96648 1.70194 1.27728 1.49045 1.11126 0.85198 0.79016 0.77258 0.78900 1.19146 1.21432 1.22032 1.20994 0.84737 0.93681 0.98013 1.22727 1.00807 0.95261 0.89455 0.84692 0.91811 0.92396 0.86025 0.84249 0.82260 0.82159 0.95193 0.89824 0.98485 0.92068 0.94040 0.97256 0.92229 0.88564 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.35 -7.66 10.48 -51.37 -0.54 -8.20 16 3 C 0.47 12.89 6.91 71.24 0.49 13.39 16 4 O -0.51 -16.93 13.60 21.95 0.30 -16.64 16 5 C 0.13 3.59 2.20 43.43 0.10 3.69 16 6 H 0.10 2.34 8.00 -2.39 -0.02 2.32 16 7 C -0.09 -2.07 3.57 -19.86 -0.07 -2.14 16 8 C -0.08 -2.23 8.13 22.26 0.18 -2.05 16 9 C -0.12 -2.78 9.83 22.29 0.22 -2.56 16 10 C -0.03 -0.70 6.32 22.33 0.14 -0.56 16 11 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 12 C -0.11 -1.89 9.83 22.29 0.22 -1.67 16 13 C -0.08 -1.47 9.67 22.27 0.22 -1.25 16 14 N -0.52 -18.05 3.65 -878.83 -3.20 -21.26 16 15 C 0.06 2.21 5.23 86.38 0.45 2.66 16 16 C 0.19 9.35 5.42 86.35 0.47 9.82 16 17 N -0.61 -31.85 3.04 -698.14 -2.12 -33.97 16 18 C -0.26 -14.80 9.63 84.03 0.81 -13.99 16 19 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -2.73 4.94 84.86 0.42 -2.31 16 21 N -0.93 -55.76 11.15 21.65 0.24 -55.52 16 22 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 C 0.15 6.78 6.69 86.35 0.58 7.35 16 27 C 0.05 1.69 5.22 86.38 0.45 2.14 16 28 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 31 H 0.12 3.77 7.72 -2.91 -0.02 3.75 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 2.03 8.04 -2.91 -0.02 2.01 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 2.88 5.94 -2.39 -0.01 2.86 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 3.36 6.12 -2.39 -0.01 3.35 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 42 H 0.10 3.40 5.24 -2.39 -0.01 3.39 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -68.07 364.22 3.51 -64.55 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.02 Total: 11.18 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.87 Total: 14.17 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -5.08 Total: -110.74 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.24 Total: -24.83 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -68.07 3.51 -64.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042132373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.238 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds