Wall clock time and date at job start Tue Mar 31 2020 20:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 117.00116 * 2 1 4 4 O 1.20824 * 119.99820 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00151 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47216 * 30.64260 * 5 3 2 7 7 C 1.50699 * 109.46786 * 270.64381 * 5 3 2 8 8 C 1.38235 * 119.99041 * 287.34403 * 7 5 3 9 9 C 1.38222 * 120.01479 * 179.72893 * 8 7 5 10 10 C 1.38347 * 119.98270 * 0.54298 * 9 8 7 11 11 Cl 1.73603 * 120.01113 * 179.70853 * 10 9 8 12 12 C 1.38354 * 119.97641 * 359.72796 * 10 9 8 13 13 C 1.38215 * 119.98525 * 359.97438 * 12 10 9 14 14 N 1.46905 * 109.47091 * 150.64656 * 5 3 2 15 15 C 1.46900 * 110.99971 * 298.44729 * 14 5 3 16 16 C 1.53236 * 109.33796 * 172.75111 * 15 14 5 17 17 N 1.47077 * 108.52529 * 53.82731 * 16 15 14 18 18 C 1.36926 * 120.88026 * 128.83925 * 17 16 15 19 19 H 1.08003 * 120.00269 * 333.83590 * 18 17 16 20 20 C 1.38816 * 120.00214 * 153.84042 * 18 17 16 21 21 N 1.31616 * 120.00148 * 158.92742 * 20 18 17 22 22 Si 1.86804 * 119.99738 * 338.93285 * 20 18 17 23 23 H 1.48496 * 109.46909 * 89.51979 * 22 20 18 24 24 H 1.48504 * 109.46936 * 209.52056 * 22 20 18 25 25 H 1.48503 * 109.46859 * 329.52087 * 22 20 18 26 26 C 1.47075 * 118.23525 * 308.81663 * 17 16 15 27 27 C 1.46891 * 110.99570 * 174.14390 * 14 5 3 28 28 H 1.09001 * 109.46613 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47139 * 300.00073 * 1 2 3 30 30 H 1.08998 * 109.46817 * 60.00905 * 1 2 3 31 31 H 1.08005 * 119.99211 * 359.97438 * 8 7 5 32 32 H 1.07993 * 120.00443 * 180.27137 * 9 8 7 33 33 H 1.08000 * 120.00583 * 179.97438 * 12 10 9 34 34 H 1.07998 * 119.99059 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.49074 * 292.71083 * 15 14 5 36 36 H 1.09000 * 109.48968 * 52.78408 * 15 14 5 37 37 H 1.09003 * 109.62407 * 294.11654 * 16 15 14 38 38 H 1.09004 * 109.62942 * 173.54359 * 16 15 14 39 39 H 0.97007 * 120.00266 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.63368 * 291.47515 * 26 17 16 41 41 H 1.08997 * 109.63109 * 170.89544 * 26 17 16 42 42 H 1.08997 * 109.49955 * 307.21497 * 27 14 5 43 43 H 1.09005 * 109.49640 * 67.26682 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9753 0.4111 -0.5247 7 6 4.0693 1.2849 1.4200 8 6 3.9042 2.4117 2.2035 9 6 4.3603 2.4195 3.5082 10 6 4.9923 1.3032 4.0264 11 17 5.5722 1.3150 5.6627 12 6 5.1622 0.1777 3.2400 13 6 4.7002 0.1690 1.9374 14 7 3.9919 2.5062 -0.6794 15 6 3.5499 2.5147 -2.0803 16 6 3.8522 3.8834 -2.6995 17 7 5.2773 4.1841 -2.4952 18 6 6.0719 4.5672 -3.5425 19 1 5.8227 4.2638 -4.5487 20 6 7.1979 5.3454 -3.3112 21 7 8.1713 5.3742 -4.1966 22 14 7.3316 6.3516 -1.7430 23 1 7.9722 5.5328 -0.6826 24 1 8.1544 7.5609 -1.9995 25 1 5.9745 6.7609 -1.3003 26 6 5.8261 4.0631 -1.1361 27 6 5.4461 2.6873 -0.5784 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.4151 3.2848 1.7973 32 1 4.2273 3.2984 4.1216 33 1 5.6559 -0.6938 3.6439 34 1 4.8332 -0.7094 1.3233 35 1 4.0804 1.7398 -2.6338 36 1 2.4776 2.3242 -2.1245 37 1 3.2437 4.6469 -2.2149 38 1 3.6324 3.8590 -3.7669 39 1 8.9579 5.9184 -4.0351 40 1 5.4074 4.8439 -0.5011 41 1 6.9115 4.1575 -1.1697 42 1 5.7491 2.6220 0.4666 43 1 5.9503 1.9098 -1.1524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042132374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:38 Heat of formation + Delta-G solvation = -14.965133 kcal Electronic energy + Delta-G solvation = -27890.252514 eV Core-core repulsion = 23962.995773 eV Total energy + Delta-G solvation = -3927.256741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99465 -39.52633 -38.22283 -36.70875 -36.46772 -34.81095 -32.27016 -31.31237 -30.93681 -30.48603 -28.66701 -27.32788 -25.19326 -23.58074 -23.09000 -22.53750 -22.06991 -20.53474 -19.46073 -17.84241 -17.41896 -17.00921 -16.68113 -16.51384 -15.84780 -15.55145 -15.03795 -14.48904 -14.43443 -14.23468 -14.01085 -13.82756 -13.64604 -13.60146 -13.34632 -13.13080 -12.63805 -12.53441 -12.21662 -12.02475 -11.93984 -11.76149 -11.68055 -11.45640 -11.02331 -11.00480 -10.91663 -10.72681 -10.48015 -10.31435 -10.12107 -9.87327 -9.47389 -9.23197 -8.82318 -8.67126 -8.21373 -6.99767 -5.95632 -3.30648 0.80383 1.09925 1.89530 2.12610 2.46290 3.31869 3.36309 3.49935 3.54426 4.00943 4.41376 4.53091 4.57278 4.66942 4.72171 4.91829 4.93799 4.96005 5.01301 5.12786 5.24698 5.30700 5.33120 5.44144 5.54924 5.62113 5.77671 5.80900 5.89352 5.95418 5.99113 6.04503 6.14876 6.21843 6.28824 6.32421 6.53107 6.56164 6.62702 6.85489 7.08257 7.24950 7.71426 7.92190 8.31303 8.91478 9.70712 10.09350 11.20315 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.004359 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.106422 B = 6421.904290 C = 8678.507939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.469 3.531 4 O -0.476 6.476 5 C 0.135 3.865 6 H 0.079 0.921 7 C -0.080 4.080 8 C -0.067 4.067 9 C -0.115 4.115 10 C -0.028 4.028 11 Cl -0.074 7.074 12 C -0.115 4.115 13 C -0.089 4.089 14 N -0.511 5.511 15 C 0.039 3.961 16 C 0.156 3.844 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.881 3.119 23 H -0.287 1.287 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.132 3.868 27 C 0.045 3.955 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.263 0.737 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 -13.768 15.471 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.360 6.360 5 C 0.025 3.975 6 H 0.097 0.903 7 C -0.081 4.081 8 C -0.086 4.086 9 C -0.133 4.133 10 C -0.054 4.054 11 Cl -0.045 7.045 12 C -0.133 4.133 13 C -0.107 4.107 14 N -0.238 5.238 15 C -0.090 4.090 16 C 0.030 3.970 17 N -0.332 5.332 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.712 3.288 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.195 1.195 26 C 0.006 3.994 27 C -0.083 4.083 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.654 -12.975 15.746 23.497 hybrid contribution 0.422 -0.030 0.599 0.734 sum -11.232 -13.005 16.345 23.716 Atomic orbital electron populations 1.23249 0.76315 1.03557 1.02619 1.86502 1.23405 1.33592 1.84380 1.23376 0.91267 0.81517 0.72943 1.90680 1.66340 1.36044 1.42979 1.20020 0.87797 0.95864 0.93782 0.90311 1.19401 1.00090 0.94869 0.93751 1.21192 0.96940 0.98382 0.92056 1.21110 0.98755 0.97533 0.95948 1.21015 1.01283 0.96522 0.86600 1.98371 1.87470 1.98714 1.19964 1.20965 1.01177 0.97501 0.93687 1.21016 0.96928 0.97920 0.94869 1.61831 1.15099 1.31116 1.15733 1.22759 0.99005 1.00729 0.86494 1.20951 0.85658 0.92140 0.98279 1.44438 1.04801 1.79437 1.04501 1.18924 1.04668 1.26768 0.88442 0.89593 1.25241 0.96582 0.98602 0.97111 1.69837 1.06932 1.41752 1.36629 0.87012 0.77775 0.80352 0.83707 1.21479 1.23134 1.19511 1.21453 0.98522 0.92998 0.86452 1.22754 0.84825 1.00303 1.00433 0.88174 0.91943 0.91794 0.83608 0.84669 0.84690 0.84672 0.94371 0.91556 0.94804 0.91434 0.92746 0.94838 0.90309 0.90997 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.25 10.57 -39.26 -0.41 -4.66 16 3 C 0.47 6.44 5.85 36.00 0.21 6.65 16 4 O -0.48 -7.70 15.60 -18.75 -0.29 -8.00 16 5 C 0.14 1.81 2.18 -70.02 -0.15 1.66 16 6 H 0.08 0.96 7.93 -51.93 -0.41 0.55 16 7 C -0.08 -0.98 3.40 -104.62 -0.36 -1.34 16 8 C -0.07 -0.85 8.41 -39.59 -0.33 -1.18 16 9 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 10 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 11 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 12 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 13 C -0.09 -0.91 9.67 -39.59 -0.38 -1.29 16 14 N -0.51 -8.32 3.78 -229.13 -0.87 -9.19 16 15 C 0.04 0.66 5.35 -3.70 -0.02 0.64 16 16 C 0.16 3.14 6.69 -3.61 -0.02 3.11 16 17 N -0.61 -14.45 2.82 -172.02 -0.49 -14.94 16 18 C -0.26 -7.22 10.08 -15.06 -0.15 -7.38 16 19 H 0.09 2.54 8.05 -52.48 -0.42 2.11 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.72 13.97 55.49 0.78 -26.95 16 22 Si 0.88 22.39 24.31 -169.99 -4.13 18.25 16 23 H -0.29 -6.95 6.47 56.52 0.37 -6.59 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.27 -6.85 6.79 56.52 0.38 -6.46 16 26 C 0.13 2.87 4.36 -3.60 -0.02 2.85 16 27 C 0.05 0.80 5.27 -3.70 -0.02 0.78 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.13 -51.94 -0.42 0.11 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.15 2.03 7.94 -52.48 -0.42 1.61 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.10 7.98 -52.49 -0.42 0.68 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.06 6.42 -51.93 -0.33 0.72 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.03 0.75 7.05 -51.93 -0.37 0.38 16 41 H 0.08 1.86 4.53 -51.93 -0.24 1.63 16 42 H 0.07 1.15 6.11 -51.93 -0.32 0.83 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -31.93 360.63 -8.68 -40.61 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.91 Total: -1.06 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.30 Total: 2.73 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.58 Total: -51.07 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.71 Total: -12.66 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.13 Total: 18.25 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.93 -8.68 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042132374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.649 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds