Wall clock time and date at job start Tue Mar 31 2020 20:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 117.00116 * 2 1 4 4 O 1.20824 * 119.99820 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00151 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47216 * 30.64260 * 5 3 2 7 7 C 1.50699 * 109.46786 * 270.64381 * 5 3 2 8 8 C 1.38235 * 119.99041 * 287.34403 * 7 5 3 9 9 C 1.38222 * 120.01479 * 179.72893 * 8 7 5 10 10 C 1.38347 * 119.98270 * 0.54298 * 9 8 7 11 11 Cl 1.73603 * 120.01113 * 179.70853 * 10 9 8 12 12 C 1.38354 * 119.97641 * 359.72796 * 10 9 8 13 13 C 1.38215 * 119.98525 * 359.97438 * 12 10 9 14 14 N 1.46905 * 109.47091 * 150.64656 * 5 3 2 15 15 C 1.46900 * 110.99971 * 298.44729 * 14 5 3 16 16 C 1.53236 * 109.33796 * 172.75111 * 15 14 5 17 17 N 1.47077 * 108.52529 * 53.82731 * 16 15 14 18 18 C 1.36926 * 120.88026 * 128.83925 * 17 16 15 19 19 H 1.08003 * 120.00269 * 333.83590 * 18 17 16 20 20 C 1.38816 * 120.00214 * 153.84042 * 18 17 16 21 21 N 1.31616 * 120.00148 * 158.92742 * 20 18 17 22 22 Si 1.86804 * 119.99738 * 338.93285 * 20 18 17 23 23 H 1.48496 * 109.46909 * 89.51979 * 22 20 18 24 24 H 1.48504 * 109.46936 * 209.52056 * 22 20 18 25 25 H 1.48503 * 109.46859 * 329.52087 * 22 20 18 26 26 C 1.47075 * 118.23525 * 308.81663 * 17 16 15 27 27 C 1.46891 * 110.99570 * 174.14390 * 14 5 3 28 28 H 1.09001 * 109.46613 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47139 * 300.00073 * 1 2 3 30 30 H 1.08998 * 109.46817 * 60.00905 * 1 2 3 31 31 H 1.08005 * 119.99211 * 359.97438 * 8 7 5 32 32 H 1.07993 * 120.00443 * 180.27137 * 9 8 7 33 33 H 1.08000 * 120.00583 * 179.97438 * 12 10 9 34 34 H 1.07998 * 119.99059 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.49074 * 292.71083 * 15 14 5 36 36 H 1.09000 * 109.48968 * 52.78408 * 15 14 5 37 37 H 1.09003 * 109.62407 * 294.11654 * 16 15 14 38 38 H 1.09004 * 109.62942 * 173.54359 * 16 15 14 39 39 H 0.97007 * 120.00266 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.63368 * 291.47515 * 26 17 16 41 41 H 1.08997 * 109.63109 * 170.89544 * 26 17 16 42 42 H 1.08997 * 109.49955 * 307.21497 * 27 14 5 43 43 H 1.09005 * 109.49640 * 67.26682 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9753 0.4111 -0.5247 7 6 4.0693 1.2849 1.4200 8 6 3.9042 2.4117 2.2035 9 6 4.3603 2.4195 3.5082 10 6 4.9923 1.3032 4.0264 11 17 5.5722 1.3150 5.6627 12 6 5.1622 0.1777 3.2400 13 6 4.7002 0.1690 1.9374 14 7 3.9919 2.5062 -0.6794 15 6 3.5499 2.5147 -2.0803 16 6 3.8522 3.8834 -2.6995 17 7 5.2773 4.1841 -2.4952 18 6 6.0719 4.5672 -3.5425 19 1 5.8227 4.2638 -4.5487 20 6 7.1979 5.3454 -3.3112 21 7 8.1713 5.3742 -4.1966 22 14 7.3316 6.3516 -1.7430 23 1 7.9722 5.5328 -0.6826 24 1 8.1544 7.5609 -1.9995 25 1 5.9745 6.7609 -1.3003 26 6 5.8261 4.0631 -1.1361 27 6 5.4461 2.6873 -0.5784 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.4151 3.2848 1.7973 32 1 4.2273 3.2984 4.1216 33 1 5.6559 -0.6938 3.6439 34 1 4.8332 -0.7094 1.3233 35 1 4.0804 1.7398 -2.6338 36 1 2.4776 2.3242 -2.1245 37 1 3.2437 4.6469 -2.2149 38 1 3.6324 3.8590 -3.7669 39 1 8.9579 5.9184 -4.0351 40 1 5.4074 4.8439 -0.5011 41 1 6.9115 4.1575 -1.1697 42 1 5.7491 2.6220 0.4666 43 1 5.9503 1.9098 -1.1524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042132374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:37 Heat of formation + Delta-G solvation = -34.335010 kcal Electronic energy + Delta-G solvation = -27891.092455 eV Core-core repulsion = 23962.995773 eV Total energy + Delta-G solvation = -3928.096682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03071 -40.45228 -39.54268 -37.66590 -37.43592 -36.31823 -33.98784 -32.47329 -32.19273 -31.92004 -29.65501 -28.53182 -26.62098 -25.09643 -24.23163 -23.87121 -23.10246 -21.67052 -20.98217 -19.01989 -18.61536 -18.30443 -17.98246 -17.45341 -17.16850 -16.65548 -16.33296 -15.98394 -15.74602 -15.59723 -15.41039 -15.05134 -14.60995 -14.48166 -14.42271 -14.39472 -14.17085 -13.93363 -13.74727 -13.51488 -12.99326 -12.79402 -12.68618 -12.54509 -12.43824 -12.32587 -12.18721 -11.91118 -11.81940 -11.78420 -11.67882 -11.57987 -11.41855 -10.73874 -10.04577 -9.68079 -9.54508 -8.95688 -8.17449 -5.48758 -0.05193 0.28693 1.06650 1.12347 1.28593 1.41738 1.50262 1.53290 2.40474 2.45707 2.86042 3.05676 3.30726 3.43242 3.73385 3.76499 3.91854 3.97798 4.07707 4.14339 4.30628 4.32473 4.33415 4.37775 4.40218 4.45200 4.47591 4.62406 4.64527 4.70859 4.75935 4.86475 4.95912 4.98376 5.11358 5.20537 5.22054 5.27962 5.41565 5.71681 5.78923 5.84577 5.90764 6.12022 6.70856 6.87087 7.58853 8.01395 9.02261 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.004359 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.106422 B = 6421.904290 C = 8678.507939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.508 6.508 5 C 0.138 3.862 6 H 0.099 0.901 7 C -0.093 4.093 8 C -0.081 4.081 9 C -0.120 4.120 10 C -0.033 4.033 11 Cl -0.068 7.068 12 C -0.110 4.110 13 C -0.082 4.082 14 N -0.521 5.521 15 C 0.053 3.947 16 C 0.152 3.848 17 N -0.620 5.620 18 C -0.249 4.249 19 H 0.057 0.943 20 C -0.029 4.029 21 N -0.954 5.954 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.310 1.310 25 H -0.271 1.271 26 C 0.127 3.873 27 C 0.062 3.938 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.066 0.934 39 H 0.262 0.738 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 -15.983 17.734 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.394 6.394 5 C 0.028 3.972 6 H 0.117 0.883 7 C -0.094 4.094 8 C -0.099 4.099 9 C -0.139 4.139 10 C -0.060 4.060 11 Cl -0.040 7.040 12 C -0.128 4.128 13 C -0.100 4.100 14 N -0.247 5.247 15 C -0.076 4.076 16 C 0.027 3.973 17 N -0.345 5.345 18 C -0.379 4.379 19 H 0.075 0.925 20 C -0.224 4.224 21 N -0.600 5.600 22 Si 0.770 3.230 23 H -0.194 1.194 24 H -0.239 1.239 25 H -0.196 1.196 26 C 0.002 3.998 27 C -0.066 4.066 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.409 -15.232 18.048 26.679 hybrid contribution 0.515 0.566 -0.089 0.771 sum -11.894 -14.666 17.959 26.059 Atomic orbital electron populations 1.23564 0.74504 1.05822 1.02501 1.86486 1.25119 1.32261 1.83758 1.23416 0.91375 0.81642 0.72115 1.90675 1.67010 1.37133 1.44604 1.20032 0.87876 0.94824 0.94420 0.88312 1.19394 1.01250 0.95649 0.93067 1.21074 0.97855 0.98203 0.92806 1.21184 0.98812 0.98248 0.95618 1.21158 1.01085 0.96693 0.87032 1.98376 1.87333 1.98705 1.19543 1.21268 1.00375 0.97841 0.93358 1.21272 0.95635 0.97930 0.95210 1.61659 1.14144 1.33692 1.15203 1.22512 0.99777 0.98362 0.86976 1.21061 0.83541 0.93989 0.98677 1.44549 1.06010 1.79567 1.04409 1.18882 1.04687 1.25718 0.88570 0.92539 1.25792 0.96525 0.99860 1.00236 1.69951 1.07795 1.43238 1.39037 0.86034 0.77518 0.78556 0.80863 1.19364 1.23899 1.19579 1.21448 0.97314 0.95632 0.85422 1.22446 0.85762 0.97288 1.01149 0.84735 0.92049 0.92016 0.85530 0.83969 0.82309 0.82120 0.94221 0.90235 0.95178 0.91604 0.92872 0.95113 0.92199 0.88989 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.48 10.57 -51.41 -0.54 -8.02 16 3 C 0.47 12.05 5.85 71.23 0.42 12.47 16 4 O -0.51 -15.85 15.60 21.97 0.34 -15.51 16 5 C 0.14 3.35 2.18 43.42 0.09 3.44 16 6 H 0.10 2.05 7.93 -2.39 -0.02 2.03 16 7 C -0.09 -2.03 3.40 -19.86 -0.07 -2.10 16 8 C -0.08 -1.92 8.41 22.27 0.19 -1.73 16 9 C -0.12 -2.50 9.83 22.29 0.22 -2.28 16 10 C -0.03 -0.62 6.32 22.32 0.14 -0.48 16 11 Cl -0.07 -1.21 28.96 -2.72 -0.08 -1.29 16 12 C -0.11 -1.77 9.83 22.29 0.22 -1.55 16 13 C -0.08 -1.38 9.67 22.27 0.22 -1.16 16 14 N -0.52 -16.08 3.78 -878.85 -3.32 -19.40 16 15 C 0.05 1.72 5.35 86.38 0.46 2.18 16 16 C 0.15 6.11 6.69 86.35 0.58 6.69 16 17 N -0.62 -29.56 2.82 -698.14 -1.97 -31.53 16 18 C -0.25 -14.15 10.08 84.04 0.85 -13.31 16 19 H 0.06 3.47 8.05 -2.91 -0.02 3.45 16 20 C -0.03 -1.70 5.23 84.86 0.44 -1.26 16 21 N -0.95 -59.73 13.97 21.65 0.30 -59.43 16 22 Si 0.94 46.92 24.31 68.60 1.67 48.58 16 23 H -0.27 -12.35 6.47 99.48 0.64 -11.70 16 24 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 25 H -0.27 -13.36 6.79 99.48 0.68 -12.68 16 26 C 0.13 5.43 4.36 86.35 0.38 5.80 16 27 C 0.06 2.07 5.27 86.39 0.46 2.52 16 28 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.13 3.48 7.94 -2.91 -0.02 3.45 16 32 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 1.85 7.98 -2.91 -0.02 1.82 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 2.41 6.42 -2.39 -0.02 2.40 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 2.61 7.95 -2.39 -0.02 2.59 16 39 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 40 H 0.03 1.34 7.05 -2.39 -0.02 1.32 16 41 H 0.06 2.78 4.53 -2.39 -0.01 2.77 16 42 H 0.09 2.72 6.11 -2.39 -0.01 2.70 16 43 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -69.79 360.63 3.11 -66.68 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.93 Total: 9.04 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 5.79 Total: 10.87 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.99 Total: -110.35 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.20 Total: -23.53 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.58 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -69.79 3.11 -66.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042132374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.346 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds