Wall clock time and date at job start Tue Mar 31 2020 20:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35517 * 117.00171 * 2 1 4 4 C 1.39441 * 120.47087 * 180.25855 * 3 2 1 5 5 C 1.38192 * 118.50827 * 180.28742 * 4 3 2 6 6 N 1.32465 * 119.26944 * 359.45597 * 5 4 3 7 7 C 1.32463 * 120.88657 * 0.28172 * 6 5 4 8 8 N 1.38402 * 119.18866 * 180.02562 * 7 6 5 9 9 C 1.46898 * 110.99710 * 124.30204 * 8 7 6 10 10 C 1.53244 * 109.33606 * 172.75061 * 9 8 7 11 11 N 1.47074 * 108.52397 * 53.82576 * 10 9 8 12 12 C 1.34778 * 120.87698 * 128.79276 * 11 10 9 13 13 O 1.21287 * 119.99801 * 180.02562 * 12 11 10 14 14 C 1.50694 * 120.00267 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.47154 * 179.97438 * 14 12 11 16 16 C 1.76206 * 100.00179 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99723 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00018 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99882 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47377 * 60.00000 * 20 18 16 22 22 H 1.48503 * 109.47270 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47004 * 299.99860 * 20 18 16 24 24 C 1.47076 * 118.24028 * 308.81695 * 11 10 9 25 25 C 1.46901 * 110.99692 * 0.02562 * 8 7 6 26 26 N 1.32482 * 121.62606 * 0.02562 * 7 6 5 27 27 H 1.09000 * 109.47526 * 59.99420 * 1 2 3 28 28 H 1.08993 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47046 * 300.00034 * 1 2 3 30 30 H 1.08004 * 120.74099 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.36809 * 179.73986 * 5 4 3 32 32 H 1.08999 * 109.49376 * 292.70313 * 9 8 7 33 33 H 1.08997 * 109.49629 * 52.79062 * 9 8 7 34 34 H 1.09002 * 109.62529 * 294.11662 * 10 9 8 35 35 H 1.09001 * 109.62788 * 173.54194 * 10 9 8 36 36 H 1.08997 * 109.47487 * 300.00079 * 14 12 11 37 37 H 1.08996 * 109.47062 * 59.99888 * 14 12 11 38 38 H 0.97000 * 120.00016 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.63028 * 291.47543 * 24 11 10 40 40 H 1.08996 * 109.63159 * 170.88969 * 24 11 10 41 41 H 1.08997 * 109.49576 * 307.21628 * 25 8 7 42 42 H 1.08999 * 109.49287 * 67.29419 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2918 -0.0054 5 6 4.0209 2.5438 0.0009 6 7 3.2481 3.6197 0.0008 7 6 1.9282 3.5088 0.0004 8 7 1.1544 4.6563 -0.0001 9 6 0.2197 4.6603 -1.1333 10 6 -0.7369 5.8499 -0.9979 11 7 0.0609 7.0760 -0.8453 12 6 -0.1662 8.1506 -1.6264 13 8 0.5016 9.1535 -1.4872 14 6 -1.2499 8.1062 -2.6726 15 16 -1.3078 9.6889 -3.5488 16 6 -2.6220 9.3661 -4.6773 17 1 -3.1171 8.4063 -4.6692 18 6 -3.0209 10.3453 -5.5765 19 7 -2.4171 11.5148 -5.5867 20 14 -4.4137 10.0027 -6.7733 21 1 -5.6509 9.6861 -6.0155 22 1 -4.6443 11.2005 -7.6204 23 1 -4.0526 8.8491 -7.6359 24 6 1.1134 7.0981 0.1817 25 6 1.9972 5.8595 -0.0008 26 7 1.3304 2.3265 0.0006 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0432 0.3987 -0.0101 31 1 5.0963 2.6441 0.0012 32 1 0.7783 4.7472 -2.0653 33 1 -0.3521 3.7324 -1.1366 34 1 -1.3693 5.7130 -0.1207 35 1 -1.3566 5.9250 -1.8914 36 1 -1.0382 7.3057 -3.3814 37 1 -2.2109 7.9217 -2.1926 38 1 -2.6956 12.1990 -6.2153 39 1 0.6589 7.0813 1.1723 40 1 1.7172 7.9985 0.0680 41 1 2.7150 5.8013 0.8174 42 1 2.5307 5.9293 -0.9487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057254029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:12 Heat of formation + Delta-G solvation = 12.487488 kcal Electronic energy + Delta-G solvation = -26349.115636 eV Core-core repulsion = 22457.385787 eV Total energy + Delta-G solvation = -3891.729849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76380 -40.07718 -39.02405 -37.68852 -34.77409 -33.64260 -32.44163 -31.71396 -31.38112 -29.35010 -27.92947 -27.11506 -25.49984 -24.65181 -23.63198 -23.26833 -21.53098 -19.49027 -18.72787 -18.35408 -17.69064 -16.94715 -16.65646 -15.99255 -15.84146 -15.72556 -15.48616 -15.41946 -15.28652 -14.81519 -14.67573 -14.17295 -14.09046 -13.96157 -13.30763 -13.20075 -12.72860 -12.49599 -12.40501 -12.08068 -11.93601 -11.73784 -11.59566 -11.48584 -11.24857 -11.05319 -11.04958 -10.92809 -10.77573 -9.97113 -9.82965 -9.67327 -9.39911 -9.07203 -8.83731 -8.53075 -8.24807 -6.51747 -6.22586 -3.93588 0.59332 0.81166 2.40418 2.70390 2.94360 3.03114 3.22500 3.24778 3.28211 3.37287 3.56140 3.73153 4.18951 4.22870 4.47212 4.59533 4.65499 4.80665 4.83814 4.86560 4.88557 4.94672 4.98967 5.07697 5.12509 5.18227 5.21565 5.37040 5.42844 5.55344 5.60871 5.64140 5.79680 5.83223 5.89472 6.07831 6.20888 6.36534 6.50863 6.54411 6.90502 7.49410 7.57983 7.76295 8.33630 8.50827 9.22479 10.84762 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002337 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.052963 B =11978.276758 C =13028.013164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.386 3.614 4 C -0.279 4.279 5 C 0.200 3.800 6 N -0.571 5.571 7 C 0.535 3.465 8 N -0.459 5.459 9 C 0.053 3.947 10 C 0.114 3.886 11 N -0.625 5.625 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.115 3.885 25 C 0.058 3.942 26 N -0.586 5.586 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 -23.919 13.148 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.198 3.802 4 C -0.303 4.303 5 C 0.036 3.964 6 N -0.295 5.295 7 C 0.179 3.821 8 N -0.178 5.178 9 C -0.074 4.074 10 C -0.010 4.010 11 N -0.363 5.363 12 C 0.325 3.675 13 O -0.388 6.388 14 C -0.302 4.302 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.008 4.008 25 C -0.069 4.069 26 N -0.321 5.321 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.193 0.807 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.259 -21.663 13.678 27.241 hybrid contribution -1.074 -2.292 -1.396 2.890 sum 8.185 -23.955 12.282 28.137 Atomic orbital electron populations 1.22980 0.76364 1.03450 1.03053 1.86260 1.23683 1.23833 1.86653 1.19892 0.89361 0.84365 0.86629 1.21776 0.92658 1.01229 1.14676 1.22915 1.00457 0.86144 0.86880 1.68453 1.04894 1.34171 1.21970 1.20623 0.85675 0.88218 0.87631 1.58341 1.17556 1.00081 1.41851 1.22645 0.94267 1.00929 0.89525 1.21833 0.93029 0.82292 1.03848 1.48219 1.36681 1.14296 1.37055 1.20346 0.84210 0.82035 0.80945 1.90699 1.48529 1.30862 1.68676 1.23558 0.99119 1.07965 0.99576 1.85423 1.47199 1.09661 1.41015 1.22812 1.20778 1.03033 1.21794 0.90987 1.24988 0.97131 0.94441 0.96992 1.70005 1.40109 1.04195 1.35941 0.86229 0.81273 0.77898 0.80124 1.19919 1.20805 1.19956 1.21719 0.89685 0.97956 0.91434 1.22518 0.94301 0.86318 1.03790 1.67525 1.41253 0.97974 1.25312 0.91829 0.88175 0.91776 0.83066 0.80657 0.92786 0.87836 0.90174 0.88084 0.89319 0.89127 0.92106 0.90853 0.87717 0.88050 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.64 10.49 -18.24 -0.19 -2.83 16 3 C 0.39 3.79 7.53 -16.71 -0.13 3.66 16 4 C -0.28 -2.17 10.12 -39.15 -0.40 -2.57 16 5 C 0.20 1.56 11.29 -17.30 -0.20 1.36 16 6 N -0.57 -6.10 8.66 -14.00 -0.12 -6.22 16 7 C 0.53 6.15 7.18 -322.87 -2.32 3.83 16 8 N -0.46 -5.14 4.69 -175.10 -0.82 -5.96 16 9 C 0.05 0.55 5.49 -3.70 -0.02 0.53 16 10 C 0.11 1.25 6.50 -3.60 -0.02 1.23 16 11 N -0.63 -8.84 3.01 -172.46 -0.52 -9.36 16 12 C 0.54 10.07 7.73 -10.99 -0.08 9.98 16 13 O -0.51 -11.59 15.31 5.55 0.09 -11.50 16 14 C -0.15 -3.02 4.52 36.00 0.16 -2.86 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 17 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 20 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.12 1.41 6.60 -3.60 -0.02 1.39 16 25 C 0.06 0.65 4.79 -3.69 -0.02 0.63 16 26 N -0.59 -6.46 8.57 -13.98 -0.12 -6.58 16 27 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 31 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.98 7.51 -51.93 -0.39 0.59 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.07 6.02 -51.93 -0.31 0.75 16 36 H 0.09 1.63 7.66 -51.92 -0.40 1.23 16 37 H 0.09 1.66 8.00 -51.92 -0.42 1.25 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.41 7.06 -51.93 -0.37 1.05 16 41 H 0.10 1.05 7.62 -51.93 -0.40 0.65 16 42 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -35.58 365.57 -10.10 -45.68 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.62 Total: -1.46 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.79 Total: 5.65 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.85 Total: -53.44 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.11 Total: -14.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.58 -10.10 -45.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057254029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.164 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds