Wall clock time and date at job start Tue Mar 31 2020 20:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35231 * 107.86649 * 179.83718 * 11 10 9 13 13 C 1.40428 * 107.87011 * 0.42675 * 12 11 10 14 14 N 1.40065 * 125.98135 * 179.77214 * 13 12 11 15 15 C 1.34779 * 119.99491 * 359.97438 * 14 13 12 16 16 O 1.21528 * 119.99997 * 0.02562 * 15 14 13 17 17 C 1.48122 * 119.99667 * 179.97438 * 15 14 13 18 18 C 1.39255 * 119.68882 * 179.72848 * 17 15 14 19 19 C 1.38704 * 119.18493 * 179.71244 * 18 17 15 20 20 C 1.38409 * 118.56060 * 0.55201 * 19 18 17 21 21 C 1.39258 * 119.30501 * 359.73641 * 20 19 18 22 22 N 1.39813 * 119.61796 * 179.97438 * 21 20 19 23 23 C 1.35847 * 126.10237 * 179.68667 * 22 21 20 24 24 C 1.35274 * 107.61294 * 179.87527 * 23 22 21 25 25 C 1.39961 * 107.96886 * 0.39109 * 24 23 22 26 26 N 1.30813 * 108.36755 * 359.75699 * 25 24 23 27 27 N 1.31982 * 120.76136 * 359.96651 * 21 20 19 28 28 N 1.31240 * 108.04229 * 359.73425 * 13 12 11 29 29 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 31 31 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 32 32 H 1.08000 * 126.06444 * 0.02562 * 11 10 9 33 33 H 1.07998 * 126.06707 * 180.14031 * 12 11 10 34 34 H 0.96996 * 120.00032 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.40471 * 0.02562 * 18 17 15 36 36 H 1.08008 * 120.71433 * 180.26088 * 19 18 17 37 37 H 1.08004 * 120.34674 * 179.70940 * 20 19 18 38 38 H 1.08001 * 126.19086 * 0.02562 * 23 22 21 39 39 H 1.07996 * 126.01528 * 180.14636 * 24 23 22 40 40 H 1.08004 * 125.81502 * 179.75848 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0539 -4.4044 -0.5779 13 6 4.2969 -4.6708 0.5745 14 7 4.2292 -5.8962 1.2494 15 6 4.9328 -6.9536 0.7985 16 8 5.6263 -6.8437 -0.1934 17 6 4.8617 -8.2494 1.5126 18 6 5.5868 -9.3393 1.0378 19 6 5.5173 -10.5461 1.7181 20 6 4.7158 -10.6260 2.8437 21 6 4.0120 -9.4990 3.2607 22 7 3.2001 -9.5725 4.3965 23 6 2.4642 -8.5584 4.9214 24 6 1.8229 -9.0394 6.0110 25 6 2.1816 -10.3835 6.1648 26 7 3.0051 -10.7034 5.2000 27 7 4.1028 -8.3623 2.5961 28 7 3.6647 -3.5705 0.9089 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8785 -0.6824 0.8776 32 1 5.2842 -2.6013 -1.7657 33 1 5.6855 -5.1076 -1.1004 34 1 3.6760 -5.9838 2.0413 35 1 6.1999 -9.2446 0.1537 36 1 6.0728 -11.4061 1.3740 37 1 4.6368 -11.5527 3.3926 38 1 2.4006 -7.5512 4.5367 39 1 1.1551 -8.4830 6.6520 40 1 1.8372 -11.0440 6.9468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076354072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:28 Heat of formation + Delta-G solvation = 189.765594 kcal Electronic energy + Delta-G solvation = -26879.877065 eV Core-core repulsion = 22892.683371 eV Total energy + Delta-G solvation = -3987.193694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93723 -41.01636 -40.38503 -38.95197 -35.01652 -34.04584 -33.50483 -32.96669 -31.26987 -30.70661 -29.89184 -29.46699 -27.33670 -25.41108 -24.50718 -22.93030 -22.10177 -21.32328 -21.14915 -20.28515 -19.73172 -18.72285 -17.68262 -17.10616 -16.71871 -16.48368 -16.05979 -15.97636 -15.45772 -15.31791 -15.11297 -14.53559 -14.42787 -14.03691 -13.88410 -13.67326 -13.49527 -13.14117 -13.07736 -12.67588 -12.57876 -12.41636 -12.13992 -11.24704 -11.23176 -10.93577 -10.89073 -10.65927 -10.54147 -10.43149 -10.17033 -10.03143 -9.80345 -9.55883 -9.53852 -8.78414 -8.71316 -8.25607 -7.60351 -6.24982 -4.27651 0.07277 0.40666 1.62175 1.67675 2.27960 2.43608 2.54101 2.77731 3.14959 3.19792 3.22738 3.32550 3.47091 3.70752 3.80163 4.00182 4.21278 4.43171 4.47930 4.52113 4.63399 4.81421 4.96642 5.02676 5.12533 5.32295 5.36301 5.47868 5.61084 5.62658 5.65743 5.86659 6.09327 6.15442 6.32449 6.38699 6.44834 6.60368 6.65457 6.86281 7.21316 7.24727 7.35100 7.50219 7.76154 8.03464 8.30886 8.49629 8.84574 9.29646 10.87678 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002471 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.015714 B =11331.001684 C =13184.994643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.257 3.743 14 N -0.608 5.608 15 C 0.580 3.420 16 O -0.504 6.504 17 C 0.123 3.877 18 C -0.121 4.121 19 C -0.055 4.055 20 C -0.143 4.143 21 C 0.375 3.625 22 N -0.330 5.330 23 C 0.083 3.917 24 C -0.263 4.263 25 C 0.067 3.933 26 N -0.288 5.288 27 N -0.484 5.484 28 N -0.291 5.291 29 H 0.268 0.732 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.421 0.579 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.186 0.814 39 H 0.159 0.841 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.348 -21.683 7.726 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.003 3.997 14 N -0.255 5.255 15 C 0.363 3.637 16 O -0.377 6.377 17 C -0.017 4.017 18 C -0.142 4.142 19 C -0.081 4.081 20 C -0.166 4.166 21 C 0.145 3.855 22 N -0.108 5.108 23 C -0.059 4.059 24 C -0.292 4.292 25 C -0.122 4.122 26 N -0.107 5.107 27 N -0.201 5.201 28 N -0.122 5.122 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.188 0.812 33 H 0.180 0.820 34 H 0.258 0.742 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.203 0.797 39 H 0.176 0.824 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.112 -20.945 7.520 24.444 hybrid contribution 0.266 0.587 0.080 0.649 sum 10.378 -20.358 7.600 24.082 Atomic orbital electron populations 1.69872 1.06159 1.27324 1.49063 1.24832 0.94872 0.98797 0.94234 0.86891 0.80227 0.83817 0.79019 1.19685 1.18955 1.20574 1.21104 0.87737 0.95742 1.52778 0.89616 1.20082 0.97517 0.72865 0.98292 1.48666 1.32635 1.10197 1.18336 1.22565 0.95924 0.94626 0.96514 1.21541 1.11505 0.96910 1.01433 1.19066 0.99321 0.86480 0.94816 1.42179 1.46331 1.06914 1.30053 1.17591 0.80074 0.82181 0.83822 1.90751 1.39630 1.82729 1.24576 1.20672 0.94858 0.94663 0.91471 1.22164 0.98945 0.91810 1.01320 1.21580 0.95709 0.98035 0.92809 1.21843 0.97318 0.99118 0.98279 1.17522 0.91369 0.90283 0.86331 1.45781 1.35507 1.09140 1.20363 1.23050 0.92774 0.95260 0.94768 1.21727 1.09236 0.95977 1.02213 1.24186 0.94818 0.96267 0.96884 1.77421 1.21746 1.05958 1.05559 1.66646 1.19879 1.25518 1.08017 1.77429 1.23329 0.95457 1.15980 0.92149 0.92806 0.94374 0.81221 0.82007 0.74226 0.82264 0.82737 0.82830 0.79694 0.82365 0.78917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.00 9.79 -34.44 -0.34 -15.34 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.23 5.41 5.33 -5.20 -0.03 5.39 16 10 N -0.32 -7.07 3.67 -62.56 -0.23 -7.30 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.34 9.60 -39.83 -0.38 -5.73 16 13 C 0.26 5.09 8.11 -154.46 -1.25 3.84 16 14 N -0.61 -9.86 5.44 -11.91 -0.06 -9.93 16 15 C 0.58 8.53 7.78 -12.20 -0.09 8.44 16 16 O -0.50 -8.22 13.44 5.34 0.07 -8.15 16 17 C 0.12 1.45 6.75 -83.03 -0.56 0.89 16 18 C -0.12 -1.08 9.63 -39.03 -0.38 -1.46 16 19 C -0.06 -0.38 10.16 -39.35 -0.40 -0.78 16 20 C -0.14 -1.22 9.70 -39.14 -0.38 -1.60 16 21 C 0.37 4.14 7.55 -154.53 -1.17 2.97 16 22 N -0.33 -3.67 3.81 -12.10 -0.05 -3.72 16 23 C 0.08 0.83 11.10 -16.83 -0.19 0.64 16 24 C -0.26 -2.20 10.80 -39.99 -0.43 -2.63 16 25 C 0.07 0.54 12.02 -17.34 -0.21 0.33 16 26 N -0.29 -3.01 11.83 30.64 0.36 -2.65 16 27 N -0.48 -5.74 9.03 -8.86 -0.08 -5.82 16 28 N -0.29 -6.64 12.42 31.43 0.39 -6.24 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 31 H 0.04 0.88 7.57 -51.93 -0.39 0.48 16 32 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 33 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16 34 H 0.42 6.17 8.15 -40.82 -0.33 5.84 16 35 H 0.16 1.24 7.63 -52.49 -0.40 0.84 16 36 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.15 1.13 7.68 -52.48 -0.40 0.73 16 38 H 0.19 1.67 8.05 -52.49 -0.42 1.24 16 39 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -34.87 357.74 -8.11 -42.98 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.91 Total: 7.99 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -6.10 Total: -2.19 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 1.11 Total: -61.36 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.87 -8.11 -42.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076354072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.747 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds