Wall clock time and date at job start Tue Mar 31 2020 20:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48503 * 109.46984 * 269.99872 * 3 2 1 5 5 H 1.48500 * 109.47110 * 30.00169 * 3 2 1 6 6 H 1.48498 * 109.47044 * 150.00120 * 3 2 1 7 7 C 1.37881 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99817 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47504 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97801 * 124.99452 * 10 9 7 12 12 C 1.35231 * 107.86558 * 179.74699 * 11 10 9 13 13 C 1.40424 * 107.86700 * 0.37049 * 12 11 10 14 14 N 1.40104 * 125.97324 * 179.88216 * 13 12 11 15 15 C 1.34768 * 119.99996 * 359.72575 * 14 13 12 16 16 O 1.21614 * 120.00518 * 359.97438 * 15 14 13 17 17 C 1.47496 * 119.99873 * 179.97438 * 15 14 13 18 18 C 1.36633 * 125.76908 * 180.30327 * 17 15 14 19 19 N 1.35084 * 106.78895 * 180.13586 * 18 17 15 20 20 C 1.40228 * 126.60740 * 179.85332 * 19 18 17 21 21 C 1.38831 * 120.05994 * 179.71200 * 20 19 18 22 22 C 1.38121 * 119.93304 * 179.97438 * 21 20 19 23 23 C 1.38285 * 120.06636 * 0.02562 * 22 21 20 24 24 C 1.38280 * 120.12709 * 359.97438 * 23 22 21 25 25 C 1.38123 * 120.06843 * 0.02562 * 24 23 22 26 26 N 1.40208 * 106.77689 * 359.59003 * 19 18 17 27 27 N 1.28752 * 108.38649 * 0.26245 * 26 19 18 28 28 N 1.31227 * 108.05052 * 359.62795 * 13 12 11 29 29 H 0.97003 * 120.00229 * 359.97438 * 1 2 3 30 30 H 1.09011 * 109.47124 * 59.99669 * 9 7 2 31 31 H 1.09003 * 109.47246 * 300.00096 * 9 7 2 32 32 H 1.08003 * 126.06604 * 0.02562 * 11 10 9 33 33 H 1.08004 * 126.06609 * 180.26492 * 12 11 10 34 34 H 0.97005 * 119.99471 * 179.71445 * 14 13 12 35 35 H 1.07998 * 126.60258 * 0.02562 * 18 17 15 36 36 H 1.08001 * 120.03664 * 359.95445 * 21 20 19 37 37 H 1.08000 * 119.97131 * 180.02562 * 22 21 20 38 38 H 1.07994 * 119.93477 * 179.72543 * 23 22 21 39 39 H 1.08006 * 119.96188 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.02850 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.8552 -3.1137 -0.8946 12 6 5.0606 -4.4044 -0.5472 13 6 4.2951 -4.6689 0.5999 14 7 4.2249 -5.8927 1.2784 15 6 4.9306 -6.9512 0.8336 16 8 5.6280 -6.8443 -0.1569 17 6 4.8571 -8.2394 1.5482 18 6 5.5240 -9.3817 1.2060 19 7 5.1779 -10.3219 2.1120 20 6 5.6224 -11.6514 2.1489 21 6 5.1811 -12.5046 3.1512 22 6 5.6202 -13.8137 3.1848 23 6 6.4989 -14.2746 2.2216 24 6 6.9402 -13.4270 1.2221 25 6 6.5046 -12.1169 1.1834 26 7 4.2935 -9.7106 3.0119 27 7 4.1275 -8.4862 2.6498 28 7 3.6612 -3.5678 0.9285 29 1 -0.4850 0.8400 0.0004 30 1 3.8745 -0.6807 0.8906 31 1 3.8752 -0.6796 -0.8895 32 1 5.3003 -2.6031 -1.7358 33 1 5.6988 -5.1075 -1.0617 34 1 3.6684 -5.9780 2.0684 35 1 6.1968 -9.5089 0.3707 36 1 4.4954 -12.1450 3.9042 37 1 5.2769 -14.4781 3.9640 38 1 6.8443 -15.2974 2.2525 39 1 7.6268 -13.7897 0.4715 40 1 6.8499 -11.4553 0.4027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:22 Heat of formation + Delta-G solvation = 166.122427 kcal Electronic energy + Delta-G solvation = -26347.278424 eV Core-core repulsion = 22359.059486 eV Total energy + Delta-G solvation = -3988.218938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.67898 -42.22330 -40.57390 -40.08446 -36.35532 -35.80338 -35.17467 -33.23603 -32.57617 -31.82642 -31.05504 -30.78217 -29.02711 -26.05732 -25.36824 -24.44247 -23.61339 -22.66524 -22.43479 -21.66787 -20.99464 -19.78390 -19.09991 -18.35795 -17.89633 -17.47358 -17.18252 -17.01688 -16.47066 -16.36483 -16.15298 -15.91500 -15.52091 -15.26853 -15.04923 -14.81918 -14.50471 -14.36390 -14.19595 -13.87254 -13.83527 -13.55222 -13.01323 -12.88725 -12.52421 -12.47931 -12.39942 -12.32486 -12.08402 -11.83112 -11.66264 -11.50349 -11.20353 -10.86124 -10.77587 -10.08306 -9.79574 -9.61163 -9.12843 -8.36630 -6.47262 -0.68300 0.22524 0.27725 0.70452 0.75519 1.12045 1.28634 1.37444 1.42396 1.51091 1.72702 2.24060 2.30016 2.32399 2.69603 2.88526 2.95903 3.13591 3.56824 3.63825 3.84037 3.92728 3.98996 4.16788 4.20991 4.29128 4.36059 4.49720 4.57979 4.60199 4.74464 4.86590 4.90076 4.97190 5.07920 5.21733 5.25415 5.27954 5.43717 5.46582 5.82792 5.88342 6.00908 6.07131 6.41722 6.58198 6.60703 6.84262 6.99976 7.15691 8.80631 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035669 B = 0.001776 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.800063 B =15760.400442 C =16315.715604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.549 4.549 8 H 0.024 0.976 9 C 0.239 3.761 10 N -0.342 5.342 11 C 0.064 3.936 12 C -0.289 4.289 13 C 0.263 3.737 14 N -0.617 5.617 15 C 0.620 3.380 16 O -0.525 6.525 17 C -0.109 4.109 18 C 0.119 3.881 19 N -0.300 5.300 20 C 0.096 3.904 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.106 4.106 24 C -0.096 4.096 25 C -0.123 4.123 26 N -0.075 5.075 27 N -0.216 5.216 28 N -0.349 5.349 29 H 0.272 0.728 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.216 0.784 33 H 0.177 0.823 34 H 0.423 0.577 35 H 0.248 0.752 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.199 -29.823 1.333 36.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.587 4.587 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.084 4.084 12 C -0.320 4.320 13 C 0.009 3.991 14 N -0.265 5.265 15 C 0.406 3.594 16 O -0.399 6.399 17 C -0.247 4.247 18 C -0.036 4.036 19 N -0.077 5.077 20 C 0.006 3.994 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.143 4.143 26 N -0.054 5.054 27 N -0.090 5.090 28 N -0.180 5.180 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.194 0.806 34 H 0.260 0.740 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 18.810 -29.145 2.715 34.794 hybrid contribution -0.038 0.629 -0.566 0.847 sum 18.771 -28.516 2.149 34.207 Atomic orbital electron populations 1.70060 1.08653 1.28806 1.50668 1.25959 0.95785 1.03652 0.93173 0.85586 0.79455 0.76994 0.80142 1.17512 1.20740 1.16193 1.21255 0.90639 0.93717 1.53104 0.95728 1.19911 0.94065 0.74315 0.99788 1.48544 1.33986 1.10039 1.19850 1.23326 0.94005 0.94597 0.96485 1.21797 1.11447 0.97435 1.01325 1.19404 0.98067 0.86695 0.94954 1.42279 1.47073 1.06588 1.30524 1.16721 0.78674 0.81163 0.82884 1.90721 1.40449 1.83288 1.25455 1.21025 1.07419 0.96442 0.99857 1.23847 0.98139 0.86038 0.95575 1.47805 1.30755 1.09683 1.19496 1.18040 1.01434 0.79100 1.00869 1.21123 1.00832 0.94436 0.97554 1.21435 0.96849 0.93896 0.99899 1.21818 0.95564 1.01706 0.93344 1.21487 0.99206 0.91501 0.99204 1.21327 0.96608 0.98496 0.97885 1.82033 1.10046 1.00406 1.12914 1.74679 1.16075 1.08284 1.09955 1.77353 1.25841 0.96974 1.17799 0.91901 0.93673 0.89644 0.76715 0.80582 0.74025 0.73565 0.85227 0.82622 0.82103 0.81557 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.96 41.16 27.47 68.60 1.88 43.05 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.24 -9.25 6.54 99.48 0.65 -8.59 16 7 C -0.55 -32.30 9.79 25.60 0.25 -32.05 16 8 H 0.02 1.69 8.06 -2.91 -0.02 1.67 16 9 C 0.24 11.18 5.33 85.63 0.46 11.64 16 10 N -0.34 -15.56 3.67 -351.84 -1.29 -16.85 16 11 C 0.06 2.32 11.44 83.52 0.96 3.28 16 12 C -0.29 -10.85 9.60 22.11 0.21 -10.64 16 13 C 0.26 10.95 8.11 133.35 1.08 12.03 16 14 N -0.62 -21.66 5.44 -310.40 -1.69 -23.35 16 15 C 0.62 19.02 7.78 86.69 0.67 19.70 16 16 O -0.53 -16.85 13.99 -4.08 -0.06 -16.90 16 17 C -0.11 -2.79 6.99 40.81 0.29 -2.50 16 18 C 0.12 2.15 10.60 83.82 0.89 3.04 16 19 N -0.30 -5.80 3.82 -186.88 -0.71 -6.51 16 20 C 0.10 1.36 6.69 38.08 0.25 1.61 16 21 C -0.12 -1.54 9.68 22.38 0.22 -1.32 16 22 C -0.10 -0.71 10.04 22.25 0.22 -0.49 16 23 C -0.11 -0.40 10.04 22.29 0.22 -0.18 16 24 C -0.10 -0.38 10.04 22.25 0.22 -0.16 16 25 C -0.12 -0.97 9.47 22.38 0.21 -0.76 16 26 N -0.08 -1.93 13.12 37.02 0.49 -1.44 16 27 N -0.22 -6.13 12.03 -49.99 -0.60 -6.73 16 28 N -0.35 -16.93 12.42 -54.47 -0.68 -17.61 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.05 2.08 7.20 -2.38 -0.02 2.06 16 31 H 0.09 3.38 7.50 -2.39 -0.02 3.36 16 32 H 0.22 5.52 8.06 -2.91 -0.02 5.50 16 33 H 0.18 6.06 5.91 -2.91 -0.02 6.04 16 34 H 0.42 14.12 8.51 -92.70 -0.79 13.33 16 35 H 0.25 2.27 7.13 -2.91 -0.02 2.25 16 36 H 0.13 1.90 7.73 -2.91 -0.02 1.88 16 37 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 38 H 0.16 -0.30 8.06 -2.91 -0.02 -0.32 16 39 H 0.17 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.16 0.53 6.81 -2.91 -0.02 0.51 16 Total: -1.00 -83.27 357.14 4.53 -78.73 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.27 Total: 22.00 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 6.62 Total: 4.41 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -4.19 Total: -131.29 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.06 Total: -16.90 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.05 kcal Total: -83.27 4.53 -78.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.856 kcal (2) G-P(sol) polarization free energy of solvation -83.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds