Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48507 * 109.46963 * 90.00176 * 3 2 1 5 5 H 1.48497 * 109.47616 * 210.00195 * 3 2 1 6 6 H 1.48505 * 109.47168 * 330.00568 * 3 2 1 7 7 C 1.37885 * 120.00104 * 180.28035 * 2 1 3 8 8 H 1.08003 * 119.99661 * 359.72337 * 7 2 1 9 9 C 1.50695 * 119.99921 * 179.72139 * 7 2 1 10 10 N 1.46501 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.34978 * 125.97344 * 124.71527 * 10 9 7 12 12 C 1.35240 * 107.85927 * 179.83946 * 11 10 9 13 13 C 1.40413 * 107.87063 * 0.42155 * 12 11 10 14 14 N 1.40094 * 125.97755 * 179.70177 * 13 12 11 15 15 C 1.34776 * 119.99674 * 0.02562 * 14 13 12 16 16 O 1.21595 * 119.99979 * 359.97438 * 15 14 13 17 17 C 1.47561 * 119.99686 * 180.02562 * 15 14 13 18 18 C 1.39986 * 120.59830 * 318.98831 * 17 15 14 19 19 C 1.38350 * 118.34821 * 180.02562 * 18 17 15 20 20 C 1.38390 * 119.45665 * 359.97438 * 19 18 17 21 21 N 1.31847 * 121.18065 * 359.97438 * 20 19 18 22 22 C 1.32252 * 121.81027 * 359.74513 * 21 20 19 23 23 N 1.39357 * 119.80301 * 180.26659 * 22 21 20 24 24 C 1.35931 * 126.10586 * 332.74795 * 23 22 21 25 25 C 1.35240 * 107.59919 * 179.83462 * 24 23 22 26 26 C 1.40004 * 107.97520 * 0.43070 * 25 24 23 27 27 N 1.30793 * 108.38016 * 359.72997 * 26 25 24 28 28 N 1.31235 * 108.04992 * 359.74318 * 13 12 11 29 29 H 0.96991 * 119.99877 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47169 * 299.99637 * 9 7 2 31 31 H 1.09000 * 109.47581 * 60.00243 * 9 7 2 32 32 H 1.07990 * 126.06775 * 359.96303 * 11 10 9 33 33 H 1.07997 * 126.05932 * 180.12927 * 12 11 10 34 34 H 0.96997 * 120.00010 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.82269 * 359.97438 * 18 17 15 36 36 H 1.08002 * 120.26936 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.41009 * 180.02562 * 20 19 18 38 38 H 1.07998 * 126.20397 * 0.02562 * 24 23 22 39 39 H 1.08003 * 126.01029 * 180.19205 * 25 24 23 40 40 H 1.07993 * 125.81521 * 179.71357 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0046 -1.1941 -0.0058 8 1 1.4646 -2.1294 -0.0059 9 6 3.5115 -1.1940 -0.0122 10 7 3.9999 -2.5752 -0.0183 11 6 4.8469 -3.1128 -0.9213 12 6 5.0539 -4.4045 -0.5783 13 6 4.2970 -4.6708 0.5740 14 7 4.2281 -5.8969 1.2482 15 6 4.9312 -6.9545 0.7969 16 8 5.6249 -6.8445 -0.1957 17 6 4.8582 -8.2461 1.5067 18 6 4.8615 -8.2914 2.9059 19 6 4.7920 -9.5276 3.5232 20 6 4.7213 -10.6722 2.7486 21 7 4.7185 -10.6061 1.4318 22 6 4.7777 -9.4504 0.7916 23 7 4.7665 -9.4290 -0.6017 24 6 5.2073 -10.4195 -1.4216 25 6 5.0188 -10.0093 -2.6965 26 6 4.4558 -8.7280 -2.6593 27 7 4.3046 -8.3801 -1.4076 28 7 3.6647 -3.5706 0.9085 29 1 -0.4849 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9025 31 1 3.8787 -0.6824 0.8775 32 1 5.2835 -2.6015 -1.7664 33 1 5.6852 -5.1077 -1.1009 34 1 3.6744 -5.9847 2.0398 35 1 4.9179 -7.3840 3.4888 36 1 4.7920 -9.5987 4.6009 37 1 4.6665 -11.6367 3.2313 38 1 5.6285 -11.3643 -1.1113 39 1 5.2634 -10.5699 -3.5866 40 1 4.1916 -8.1287 -3.5179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117716419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = 202.017826 kcal Electronic energy + Delta-G solvation = -27803.591521 eV Core-core repulsion = 23816.929124 eV Total energy + Delta-G solvation = -3986.662397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81892 -40.71971 -40.23413 -38.84536 -34.83751 -33.93294 -33.42712 -32.91407 -31.20525 -30.45697 -29.75475 -29.34733 -27.21708 -25.23117 -24.40215 -22.81597 -21.86794 -21.28018 -20.95187 -20.28240 -19.63660 -18.63457 -17.59070 -17.15373 -16.92754 -16.46054 -15.79506 -15.65200 -15.34645 -14.91764 -14.86917 -14.51175 -14.24118 -13.96646 -13.69330 -13.57592 -13.45174 -13.09230 -12.87674 -12.84307 -12.55520 -12.33931 -12.04031 -11.17596 -10.90398 -10.82408 -10.70014 -10.53874 -10.37538 -10.19057 -10.07488 -9.95244 -9.61369 -9.51932 -9.26094 -8.75981 -8.55998 -8.15942 -7.49631 -6.22634 -4.24858 0.13637 0.53305 1.87992 1.97976 2.39561 2.65577 2.76696 2.89892 3.16476 3.21537 3.24214 3.29026 3.68803 3.76702 3.94370 4.15959 4.23341 4.37040 4.42459 4.57579 4.82880 4.87051 4.95681 5.05274 5.26777 5.45600 5.46403 5.52706 5.58760 5.71804 5.82387 5.90730 6.20701 6.40818 6.44891 6.47116 6.57966 6.66983 6.87778 7.12700 7.26034 7.36055 7.58274 7.63009 7.83593 8.24683 8.34729 8.58275 8.87713 9.32275 10.90123 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002681 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.167202 B =10439.800377 C =11295.878133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.050 3.950 12 C -0.277 4.277 13 C 0.266 3.734 14 N -0.624 5.624 15 C 0.577 3.423 16 O -0.482 6.482 17 C -0.173 4.173 18 C -0.024 4.024 19 C -0.188 4.188 20 C 0.151 3.849 21 N -0.505 5.505 22 C 0.422 3.578 23 N -0.332 5.332 24 C 0.069 3.931 25 C -0.257 4.257 26 C 0.061 3.939 27 N -0.239 5.239 28 N -0.298 5.298 29 H 0.268 0.732 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.409 0.591 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.177 0.823 39 H 0.155 0.845 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.686 -22.141 3.387 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.101 5.101 11 C -0.099 4.099 12 C -0.308 4.308 13 C 0.012 3.988 14 N -0.271 5.271 15 C 0.361 3.639 16 O -0.353 6.353 17 C -0.181 4.181 18 C -0.050 4.050 19 C -0.208 4.208 20 C -0.008 4.008 21 N -0.218 5.218 22 C 0.193 3.807 23 N -0.111 5.111 24 C -0.070 4.070 25 C -0.285 4.285 26 C -0.130 4.130 27 N -0.056 5.056 28 N -0.129 5.129 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.244 0.756 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.189 0.811 38 H 0.194 0.806 39 H 0.172 0.828 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 11.755 -21.148 3.850 24.500 hybrid contribution 0.790 0.596 -0.236 1.018 sum 12.545 -20.552 3.614 24.348 Atomic orbital electron populations 1.69874 1.06157 1.27274 1.49208 1.24839 0.94867 0.98785 0.94286 0.86891 0.80247 0.83831 0.78977 1.19727 1.18951 1.20599 1.21121 0.87807 0.95711 1.52580 0.89637 1.20043 0.97434 0.73024 0.98151 1.48601 1.32868 1.10138 1.18495 1.22539 0.96116 0.94721 0.96539 1.21510 1.11410 0.96605 1.01323 1.19002 0.98837 0.86261 0.94679 1.42230 1.47324 1.07342 1.30245 1.17433 0.80376 0.82112 0.83987 1.90742 1.38601 1.82562 1.23427 1.20412 1.09432 0.93747 0.94515 1.21817 0.91540 0.99734 0.91945 1.22130 1.03745 0.92597 1.02364 1.22776 0.91467 0.99518 0.87018 1.67053 1.16663 1.26255 1.11822 1.17451 0.93152 0.88542 0.81562 1.45633 1.48989 1.14110 1.02363 1.22776 0.99601 0.94502 0.90145 1.21636 1.11647 0.98213 0.97019 1.24188 0.97994 0.95597 0.95177 1.77854 1.19127 1.06385 1.02219 1.77392 1.23627 0.95563 1.16300 0.92191 0.92928 0.94515 0.81471 0.82167 0.75601 0.83016 0.83155 0.81069 0.80551 0.82770 0.79199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.18 9.79 -34.44 -0.34 -15.51 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 C 0.23 5.54 5.33 -5.20 -0.03 5.52 16 10 N -0.32 -7.30 3.67 -62.56 -0.23 -7.52 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.49 9.60 -39.83 -0.38 -5.88 16 13 C 0.27 5.39 8.11 -154.44 -1.25 4.14 16 14 N -0.62 -10.16 5.39 -12.07 -0.07 -10.22 16 15 C 0.58 9.12 6.36 -12.46 -0.08 9.04 16 16 O -0.48 -8.87 11.37 5.28 0.06 -8.81 16 17 C -0.17 -2.17 5.77 -104.67 -0.60 -2.77 16 18 C -0.02 -0.20 9.51 -38.89 -0.37 -0.57 16 19 C -0.19 -1.12 10.09 -39.48 -0.40 -1.52 16 20 C 0.15 1.03 11.17 -17.49 -0.20 0.84 16 21 N -0.51 -5.34 10.02 -12.02 -0.12 -5.46 16 22 C 0.42 5.50 7.38 -154.36 -1.14 4.36 16 23 N -0.33 -4.72 3.45 -11.89 -0.04 -4.76 16 24 C 0.07 0.79 11.21 -16.80 -0.19 0.60 16 25 C -0.26 -2.71 10.80 -39.99 -0.43 -3.14 16 26 C 0.06 0.78 12.02 -17.33 -0.21 0.57 16 27 N -0.24 -3.82 8.79 30.64 0.27 -3.55 16 28 N -0.30 -6.89 12.42 31.43 0.39 -6.50 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 31 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 33 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 34 H 0.41 5.53 8.39 -40.82 -0.34 5.18 16 35 H 0.15 0.95 7.98 -52.49 -0.42 0.53 16 36 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -37.64 353.00 -8.18 -45.83 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -3.96 Total: 7.61 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -5.91 Total: -1.50 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.98 Total: -64.00 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.06 Total: -8.81 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.64 -8.18 -45.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117716419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.843 kcal (2) G-P(sol) polarization free energy of solvation -37.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds