Wall clock time and date at job start Tue Mar 31 2020 20:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35241 * 107.86228 * 179.83749 * 11 10 9 13 13 C 1.40415 * 107.86592 * 0.42579 * 12 11 10 14 14 N 1.40098 * 125.97388 * 179.71252 * 13 12 11 15 15 C 1.34782 * 119.99845 * 0.02562 * 14 13 12 16 16 O 1.21582 * 119.99814 * 0.02562 * 15 14 13 17 17 C 1.47741 * 119.99839 * 179.97438 * 15 14 13 18 18 C 1.40601 * 126.04285 * 179.97438 * 17 15 14 19 19 N 1.31245 * 106.62621 * 180.02562 * 18 17 15 20 20 N 1.40108 * 107.17574 * 359.97438 * 19 18 17 21 21 C 1.40139 * 125.56727 * 179.97438 * 20 19 18 22 22 C 1.38860 * 120.07253 * 179.74875 * 21 20 19 23 23 C 1.38113 * 119.93463 * 179.76970 * 22 21 20 24 24 C 1.38290 * 120.06655 * 0.48948 * 23 22 21 25 25 C 1.38283 * 120.13426 * 359.78746 * 24 23 22 26 26 C 1.38107 * 120.07154 * 359.95318 * 25 24 23 27 27 N 1.28714 * 108.86879 * 359.73085 * 20 19 18 28 28 N 1.31227 * 108.05286 * 359.73551 * 13 12 11 29 29 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 31 31 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 32 32 H 1.07994 * 126.06630 * 359.97438 * 11 10 9 33 33 H 1.08000 * 126.06391 * 180.16308 * 12 11 10 34 34 H 0.97004 * 120.00101 * 179.97438 * 14 13 12 35 35 H 1.08003 * 126.69219 * 0.02562 * 18 17 15 36 36 H 1.08008 * 120.02974 * 0.02562 * 22 21 20 37 37 H 1.08001 * 119.96694 * 180.25537 * 23 22 21 38 38 H 1.07999 * 119.92701 * 179.76616 * 24 23 22 39 39 H 1.08002 * 119.96181 * 179.97438 * 25 24 23 40 40 H 1.08006 * 120.03350 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0539 -4.4044 -0.5778 13 6 4.2969 -4.6707 0.5745 14 7 4.2282 -5.8967 1.2489 15 6 4.9316 -6.9542 0.7979 16 8 5.6261 -6.8441 -0.1939 17 6 4.8596 -8.2470 1.5095 18 6 5.5360 -9.4267 1.1523 19 7 5.2002 -10.3350 2.0382 20 7 4.3205 -9.7257 2.9425 21 6 3.7243 -10.3502 4.0463 22 6 2.8704 -9.6334 4.8741 23 6 2.2806 -10.2531 5.9584 24 6 2.5476 -11.5833 6.2259 25 6 3.4020 -12.2983 5.4067 26 6 3.9907 -11.6857 4.3179 27 7 4.1534 -8.4971 2.5970 28 7 3.6647 -3.5705 0.9089 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8785 -0.6824 0.8776 32 1 5.2836 -2.6016 -1.7661 33 1 5.6857 -5.1076 -1.1001 34 1 3.6750 -5.9842 2.0409 35 1 6.2021 -9.5597 0.3126 36 1 2.6644 -8.5934 4.6678 37 1 1.6131 -9.6972 6.6001 38 1 2.0881 -12.0646 7.0766 39 1 3.6089 -13.3369 5.6185 40 1 4.6576 -12.2448 3.6782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117717796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:33 Heat of formation + Delta-G solvation = 178.736939 kcal Electronic energy + Delta-G solvation = -26563.370756 eV Core-core repulsion = 22575.698824 eV Total energy + Delta-G solvation = -3987.671932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.96544 -42.25331 -40.60860 -40.05862 -36.37692 -35.26493 -35.02614 -33.80474 -33.00967 -31.99764 -31.04141 -30.72277 -29.03405 -26.46834 -24.99230 -24.43183 -23.53185 -22.55310 -22.51506 -21.73773 -20.96474 -19.60074 -19.09674 -18.60255 -18.05738 -17.72195 -17.29133 -17.03286 -16.53051 -16.36166 -16.13629 -15.85722 -15.43688 -15.26779 -15.08831 -14.81847 -14.50738 -14.45443 -14.01603 -13.87952 -13.79645 -13.40933 -13.00740 -12.67237 -12.62162 -12.57979 -12.21529 -12.02027 -11.99327 -11.82446 -11.73149 -11.52830 -11.45816 -11.26314 -10.87336 -10.09577 -9.81443 -9.46886 -9.14367 -8.37008 -6.47518 -0.69147 0.26444 0.31704 0.65290 0.77704 1.10515 1.25497 1.38348 1.40637 1.49866 1.69964 2.18362 2.28301 2.29651 2.47059 2.68509 2.95665 3.38549 3.65345 3.80686 3.84044 3.94261 4.13553 4.20413 4.31616 4.32840 4.36349 4.51961 4.58829 4.71106 4.78735 4.85551 4.88820 4.97416 5.06744 5.19413 5.24787 5.26843 5.43958 5.45184 5.80179 5.87985 5.99942 6.03989 6.40330 6.48434 6.58521 6.77576 6.97482 7.15339 8.80080 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.002147 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.226486 B =13041.227840 C =14574.257728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.227 1.227 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.025 0.975 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.065 3.935 12 C -0.290 4.290 13 C 0.263 3.737 14 N -0.616 5.616 15 C 0.623 3.377 16 O -0.517 6.517 17 C -0.065 4.065 18 C 0.094 3.906 19 N -0.286 5.286 20 N -0.154 5.154 21 C 0.114 3.886 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.105 4.105 25 C -0.097 4.097 26 C -0.112 4.112 27 N -0.208 5.208 28 N -0.347 5.347 29 H 0.272 0.728 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.215 0.785 33 H 0.176 0.824 34 H 0.422 0.578 35 H 0.252 0.748 36 H 0.132 0.868 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -24.093 9.881 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.150 1.150 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.118 3.882 10 N -0.124 5.124 11 C -0.083 4.083 12 C -0.321 4.321 13 C 0.009 3.991 14 N -0.263 5.263 15 C 0.407 3.593 16 O -0.389 6.389 17 C -0.231 4.231 18 C -0.096 4.096 19 N -0.113 5.113 20 N -0.047 5.047 21 C 0.024 3.976 22 C -0.146 4.146 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.133 4.133 27 N -0.054 5.054 28 N -0.177 5.177 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.232 0.768 33 H 0.193 0.807 34 H 0.260 0.740 35 H 0.268 0.732 36 H 0.150 0.850 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.184 0.816 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.683 -23.901 10.982 28.390 hybrid contribution 0.133 0.954 -0.931 1.339 sum 10.816 -22.946 10.052 27.287 Atomic orbital electron populations 1.70055 1.08623 1.28797 1.50699 1.25949 0.95794 1.03625 0.93241 0.85604 0.79962 0.77123 0.79591 1.19141 1.14972 1.20412 1.21238 0.90578 0.93689 1.53002 0.95649 1.19934 0.94094 0.74279 0.99846 1.48552 1.34261 1.09955 1.19604 1.23310 0.94110 0.94582 0.96327 1.21798 1.11666 0.97414 1.01178 1.19364 0.98157 0.86655 0.94944 1.42286 1.47244 1.06454 1.30359 1.16648 0.78862 0.80839 0.82948 1.90736 1.40197 1.82853 1.25102 1.22494 1.05695 0.97319 0.97543 1.25657 0.97844 0.87267 0.98830 1.78041 1.08523 1.22339 1.02400 1.48543 1.31795 1.03410 1.20947 1.17856 0.99493 0.93786 0.86442 1.21161 0.96847 1.01044 0.95498 1.21433 0.98896 0.95844 0.95776 1.21810 0.96674 0.93844 1.00011 1.21475 0.95587 1.01761 0.92726 1.21124 1.01271 0.91263 0.99615 1.73722 1.17958 1.01071 1.12630 1.77338 1.25652 0.96805 1.17922 0.91906 0.89571 0.93684 0.76817 0.80683 0.74047 0.73199 0.85008 0.82443 0.81783 0.81587 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 2 C 0.01 0.71 5.47 84.65 0.46 1.18 16 3 Si 0.96 40.63 27.47 68.60 1.88 42.51 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.23 -8.24 6.54 99.48 0.65 -7.59 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.63 9.79 25.60 0.25 -31.38 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.24 10.94 5.33 85.63 0.46 11.40 16 10 N -0.34 -15.23 3.67 -351.85 -1.29 -16.52 16 11 C 0.06 2.32 11.44 83.52 0.96 3.28 16 12 C -0.29 -10.73 9.60 22.11 0.21 -10.51 16 13 C 0.26 10.65 8.11 133.35 1.08 11.73 16 14 N -0.62 -20.65 5.44 -310.20 -1.69 -22.34 16 15 C 0.62 18.74 7.79 86.75 0.68 19.41 16 16 O -0.52 -16.72 14.02 -3.97 -0.06 -16.78 16 17 C -0.07 -1.67 7.09 42.20 0.30 -1.37 16 18 C 0.09 1.93 11.91 85.36 1.02 2.95 16 19 N -0.29 -6.34 11.90 -56.32 -0.67 -7.02 16 20 N -0.15 -3.67 4.44 -51.14 -0.23 -3.90 16 21 C 0.11 2.28 6.74 38.11 0.26 2.54 16 22 C -0.12 -2.19 9.61 22.39 0.22 -1.97 16 23 C -0.10 -1.14 10.04 22.25 0.22 -0.92 16 24 C -0.10 -0.82 10.04 22.29 0.22 -0.60 16 25 C -0.10 -0.86 10.04 22.25 0.22 -0.64 16 26 C -0.11 -1.66 9.65 22.39 0.22 -1.44 16 27 N -0.21 -5.39 10.95 -48.61 -0.53 -5.92 16 28 N -0.35 -16.34 12.42 -54.48 -0.68 -17.02 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.09 3.40 7.12 -2.39 -0.02 3.38 16 31 H 0.05 2.00 7.57 -2.39 -0.02 1.98 16 32 H 0.22 5.47 8.06 -2.91 -0.02 5.44 16 33 H 0.18 6.01 5.91 -2.91 -0.02 5.99 16 34 H 0.42 13.09 8.52 -92.71 -0.79 12.30 16 35 H 0.25 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.13 2.51 7.67 -2.91 -0.02 2.49 16 37 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.16 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.14 2.00 7.67 -2.91 -0.02 1.97 16 Total: -1.00 -79.55 358.80 4.08 -75.47 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.27 Total: 25.95 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.77 Total: 3.64 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -4.79 Total: -130.80 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.06 Total: -16.78 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.88 Total: 42.51 kcal Total: -79.55 4.08 -75.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117717796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.206 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds