Wall clock time and date at job start Tue Mar 31 2020 21:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00420 * 2 1 4 4 H 1.48501 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47321 * 300.00614 * 3 2 1 6 6 H 1.48503 * 109.46632 * 60.00529 * 3 2 1 7 7 C 1.37878 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97089 * 124.99757 * 10 9 7 12 12 C 1.35234 * 107.86370 * 179.72886 * 11 10 9 13 13 C 1.40427 * 107.86578 * 0.39242 * 12 11 10 14 14 N 1.40065 * 125.97592 * 179.86447 * 13 12 11 15 15 C 1.34777 * 119.99977 * 359.71529 * 14 13 12 16 16 O 1.21538 * 120.00081 * 0.28060 * 15 14 13 17 17 C 1.48146 * 119.99960 * 179.97438 * 15 14 13 18 18 C 1.39150 * 119.69279 * 179.72559 * 17 15 14 19 19 C 1.39273 * 118.96974 * 179.79589 * 18 17 15 20 20 N 1.39949 * 120.82086 * 180.22272 * 19 18 17 21 21 C 1.35817 * 126.10001 * 184.97079 * 20 19 18 22 22 C 1.35292 * 107.61369 * 179.84144 * 21 20 19 23 23 C 1.39942 * 107.96714 * 0.42496 * 22 21 20 24 24 N 1.30829 * 108.36745 * 359.73657 * 23 22 21 25 25 C 1.39286 * 118.36217 * 0.47818 * 19 18 17 26 26 C 1.38342 * 119.27455 * 359.74266 * 25 19 18 27 27 N 1.31598 * 120.98350 * 0.02900 * 26 25 19 28 28 N 1.31232 * 108.04736 * 359.60220 * 13 12 11 29 29 H 0.97003 * 119.99482 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47258 * 59.99851 * 9 7 2 31 31 H 1.09002 * 109.46782 * 300.00215 * 9 7 2 32 32 H 1.08006 * 126.07238 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06682 * 180.26602 * 12 11 10 34 34 H 0.96999 * 119.99975 * 179.71926 * 14 13 12 35 35 H 1.07997 * 120.51155 * 0.02562 * 18 17 15 36 36 H 1.08002 * 126.19576 * 359.96767 * 21 20 19 37 37 H 1.08004 * 126.01665 * 180.20268 * 22 21 20 38 38 H 1.07998 * 125.82166 * 179.71989 * 23 22 21 39 39 H 1.07993 * 120.36631 * 179.72819 * 25 19 18 40 40 H 1.08000 * 119.50905 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.2418 -4.6224 0.8943 12 6 3.2564 -5.4461 0.5465 13 6 3.8681 -4.9154 -0.6008 14 7 4.9625 -5.4665 -1.2793 15 6 5.5266 -6.6069 -0.8344 16 8 5.0823 -7.1598 0.1525 17 6 6.6838 -7.1900 -1.5523 18 6 7.2648 -8.3645 -1.0841 19 6 8.3493 -8.9019 -1.7731 20 7 8.9602 -10.0838 -1.3391 21 6 10.0757 -10.6493 -1.8689 22 6 10.3383 -11.7743 -1.1646 23 6 9.3515 -11.9083 -0.1814 24 7 8.5268 -10.8980 -0.2847 25 6 8.8144 -8.2310 -2.9017 26 6 8.1866 -7.0652 -3.3024 27 7 7.1605 -6.5840 -2.6334 28 7 3.2313 -3.8160 -0.9294 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6246 -2.5570 0.8897 32 1 1.5772 -4.7525 1.7357 33 1 3.5463 -6.3503 1.0611 34 1 5.3146 -5.0273 -2.0693 35 1 6.8784 -8.8538 -0.2023 36 1 10.6503 -10.2688 -2.7004 37 1 11.1623 -12.4517 -1.3340 38 1 9.2824 -12.7093 0.5396 39 1 9.6561 -8.6166 -3.4578 40 1 8.5438 -6.5422 -4.1772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121602448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:08 Heat of formation + Delta-G solvation = 180.732993 kcal Electronic energy + Delta-G solvation = -26532.020002 eV Core-core repulsion = 22544.434625 eV Total energy + Delta-G solvation = -3987.585377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09948 -40.97007 -40.32111 -38.86722 -35.08864 -34.65672 -33.33849 -32.16284 -31.11071 -30.66163 -30.26439 -29.31973 -26.87532 -25.40467 -24.51822 -23.17786 -22.37972 -21.43069 -21.17666 -20.30650 -19.66533 -18.79430 -17.33041 -16.88046 -16.57631 -16.39048 -16.04518 -15.93738 -15.46809 -15.34405 -15.18040 -14.59210 -14.39626 -14.24342 -14.07984 -13.99909 -13.59869 -13.33517 -12.84474 -12.50574 -12.34726 -12.24515 -11.79376 -11.45235 -11.30955 -11.05485 -10.88277 -10.47871 -10.39863 -10.24826 -10.05751 -9.83688 -9.78177 -9.69768 -9.47326 -8.97254 -8.62841 -8.13426 -7.48021 -6.23525 -4.28309 -0.01019 0.35664 1.56849 1.69677 2.24781 2.32450 2.64106 2.88744 3.23469 3.30914 3.36107 3.37864 3.56492 3.77650 3.80415 4.03078 4.05752 4.30330 4.33318 4.34765 4.52507 4.72787 4.89095 5.02419 5.06435 5.11864 5.25508 5.37147 5.45405 5.55398 5.82053 5.88457 6.03185 6.23122 6.46354 6.47226 6.56500 6.86100 7.03405 7.06087 7.23145 7.38023 7.56963 7.72187 7.89163 8.04246 8.14515 8.62827 8.81415 9.37363 10.85293 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.001935 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.546388 B =14468.269873 C =15182.192929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.287 4.287 13 C 0.254 3.746 14 N -0.607 5.607 15 C 0.576 3.424 16 O -0.504 6.504 17 C 0.117 3.883 18 C -0.113 4.113 19 C 0.203 3.797 20 N -0.332 5.332 21 C 0.054 3.946 22 C -0.253 4.253 23 C 0.061 3.939 24 N -0.279 5.279 25 C -0.179 4.179 26 C 0.132 3.868 27 N -0.465 5.465 28 N -0.298 5.298 29 H 0.266 0.734 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.422 0.578 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.158 0.842 38 H 0.194 0.806 39 H 0.148 0.852 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.395 -22.589 -5.912 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.001 3.999 14 N -0.254 5.254 15 C 0.360 3.640 16 O -0.377 6.377 17 C -0.022 4.022 18 C -0.136 4.136 19 C 0.102 3.898 20 N -0.108 5.108 21 C -0.087 4.087 22 C -0.282 4.282 23 C -0.127 4.127 24 N -0.097 5.097 25 C -0.203 4.203 26 C -0.027 4.027 27 N -0.177 5.177 28 N -0.129 5.129 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.259 0.741 35 H 0.182 0.818 36 H 0.199 0.801 37 H 0.176 0.824 38 H 0.211 0.789 39 H 0.166 0.834 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 19.253 -20.403 -5.834 28.653 hybrid contribution 1.857 -0.717 0.046 1.991 sum 21.110 -21.119 -5.788 30.416 Atomic orbital electron populations 1.69930 1.06035 1.27508 1.49869 1.24948 0.94991 0.99567 0.94614 0.86270 0.80086 0.82445 0.77694 1.19543 1.20696 1.20783 1.21303 0.94065 0.89347 1.51903 0.91202 1.19776 0.85610 0.81284 0.99362 1.49121 1.23107 1.19692 1.17944 1.22567 1.00309 0.90106 0.96786 1.21533 1.02213 1.06283 1.01781 1.19053 0.91451 0.94533 0.94857 1.42142 1.29000 1.24030 1.30179 1.17578 0.82117 0.80449 0.83882 1.90763 1.61554 1.60390 1.24967 1.20891 0.95820 0.92582 0.92877 1.21802 0.94509 0.95711 1.01611 1.17618 0.93576 0.84615 0.93995 1.45960 1.21021 1.18013 1.25842 1.22834 0.90026 0.95415 1.00420 1.21700 1.04681 1.00974 1.00800 1.24229 0.92572 0.96999 0.98923 1.77603 1.22854 1.04372 1.04822 1.22051 1.03436 0.98150 0.96617 1.22708 0.90116 0.91819 0.98087 1.67635 1.11907 1.32230 1.05968 1.77365 1.03452 1.16093 1.16033 0.92391 0.93608 0.92446 0.81343 0.82222 0.74079 0.81768 0.80132 0.82421 0.78933 0.83442 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 8 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 9 C 0.26 6.58 6.26 -5.20 -0.03 6.54 16 10 N -0.32 -7.45 3.67 -62.56 -0.23 -7.68 16 11 C 0.05 1.06 11.43 -17.24 -0.20 0.86 16 12 C -0.29 -5.79 9.60 -39.83 -0.38 -6.18 16 13 C 0.25 5.28 8.10 -154.46 -1.25 4.03 16 14 N -0.61 -10.34 5.43 -11.91 -0.06 -10.41 16 15 C 0.58 9.19 7.78 -12.19 -0.09 9.10 16 16 O -0.50 -9.12 13.44 5.33 0.07 -9.05 16 17 C 0.12 1.48 6.75 -83.05 -0.56 0.92 16 18 C -0.11 -1.34 9.26 -38.86 -0.36 -1.70 16 19 C 0.20 1.92 6.72 -83.38 -0.56 1.36 16 20 N -0.33 -3.05 3.81 -10.41 -0.04 -3.09 16 21 C 0.05 0.32 10.85 -16.84 -0.18 0.14 16 22 C -0.25 -1.40 10.80 -39.99 -0.43 -1.83 16 23 C 0.06 0.44 12.02 -17.34 -0.21 0.23 16 24 N -0.28 -2.93 11.98 30.64 0.37 -2.57 16 25 C -0.18 -1.14 9.54 -39.15 -0.37 -1.51 16 26 C 0.13 0.94 11.17 -17.61 -0.20 0.75 16 27 N -0.46 -5.05 9.54 -9.87 -0.09 -5.14 16 28 N -0.30 -7.03 12.42 31.42 0.39 -6.64 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.43 8.07 -51.93 -0.42 1.02 16 32 H 0.17 2.76 8.06 -52.48 -0.42 2.33 16 33 H 0.16 3.10 5.91 -52.48 -0.31 2.79 16 34 H 0.42 6.41 8.15 -40.82 -0.33 6.08 16 35 H 0.16 2.14 7.39 -52.49 -0.39 1.75 16 36 H 0.18 0.37 7.16 -52.49 -0.38 -0.01 16 37 H 0.16 0.43 8.06 -52.48 -0.42 0.00 16 38 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.15 0.38 6.90 -52.49 -0.36 0.02 16 40 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -35.24 359.49 -7.56 -42.80 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.85 Total: 5.34 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -5.25 Total: -0.79 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 1.07 Total: -60.21 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.24 -7.56 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121602448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.530 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds