Wall clock time and date at job start Tue Mar 31 2020 21:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00420 * 2 1 4 4 H 1.48501 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47321 * 300.00614 * 3 2 1 6 6 H 1.48503 * 109.46632 * 60.00529 * 3 2 1 7 7 C 1.37878 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97089 * 124.99757 * 10 9 7 12 12 C 1.35234 * 107.86370 * 179.72886 * 11 10 9 13 13 C 1.40427 * 107.86578 * 0.39242 * 12 11 10 14 14 N 1.40065 * 125.97592 * 179.86447 * 13 12 11 15 15 C 1.34777 * 119.99977 * 359.71529 * 14 13 12 16 16 O 1.21538 * 120.00081 * 0.28060 * 15 14 13 17 17 C 1.48146 * 119.99960 * 179.97438 * 15 14 13 18 18 C 1.39150 * 119.69279 * 179.72559 * 17 15 14 19 19 C 1.39273 * 118.96974 * 179.79589 * 18 17 15 20 20 N 1.39949 * 120.82086 * 180.22272 * 19 18 17 21 21 C 1.35817 * 126.10001 * 184.97079 * 20 19 18 22 22 C 1.35292 * 107.61369 * 179.84144 * 21 20 19 23 23 C 1.39942 * 107.96714 * 0.42496 * 22 21 20 24 24 N 1.30829 * 108.36745 * 359.73657 * 23 22 21 25 25 C 1.39286 * 118.36217 * 0.47818 * 19 18 17 26 26 C 1.38342 * 119.27455 * 359.74266 * 25 19 18 27 27 N 1.31598 * 120.98350 * 0.02900 * 26 25 19 28 28 N 1.31232 * 108.04736 * 359.60220 * 13 12 11 29 29 H 0.97003 * 119.99482 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47258 * 59.99851 * 9 7 2 31 31 H 1.09002 * 109.46782 * 300.00215 * 9 7 2 32 32 H 1.08006 * 126.07238 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06682 * 180.26602 * 12 11 10 34 34 H 0.96999 * 119.99975 * 179.71926 * 14 13 12 35 35 H 1.07997 * 120.51155 * 0.02562 * 18 17 15 36 36 H 1.08002 * 126.19576 * 359.96767 * 21 20 19 37 37 H 1.08004 * 126.01665 * 180.20268 * 22 21 20 38 38 H 1.07998 * 125.82166 * 179.71989 * 23 22 21 39 39 H 1.07993 * 120.36631 * 179.72819 * 25 19 18 40 40 H 1.08000 * 119.50905 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.2418 -4.6224 0.8943 12 6 3.2564 -5.4461 0.5465 13 6 3.8681 -4.9154 -0.6008 14 7 4.9625 -5.4665 -1.2793 15 6 5.5266 -6.6069 -0.8344 16 8 5.0823 -7.1598 0.1525 17 6 6.6838 -7.1900 -1.5523 18 6 7.2648 -8.3645 -1.0841 19 6 8.3493 -8.9019 -1.7731 20 7 8.9602 -10.0838 -1.3391 21 6 10.0757 -10.6493 -1.8689 22 6 10.3383 -11.7743 -1.1646 23 6 9.3515 -11.9083 -0.1814 24 7 8.5268 -10.8980 -0.2847 25 6 8.8144 -8.2310 -2.9017 26 6 8.1866 -7.0652 -3.3024 27 7 7.1605 -6.5840 -2.6334 28 7 3.2313 -3.8160 -0.9294 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6246 -2.5570 0.8897 32 1 1.5772 -4.7525 1.7357 33 1 3.5463 -6.3503 1.0611 34 1 5.3146 -5.0273 -2.0693 35 1 6.8784 -8.8538 -0.2023 36 1 10.6503 -10.2688 -2.7004 37 1 11.1623 -12.4517 -1.3340 38 1 9.2824 -12.7093 0.5396 39 1 9.6561 -8.6166 -3.4578 40 1 8.5438 -6.5422 -4.1772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121602448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:07 Heat of formation + Delta-G solvation = 157.060741 kcal Electronic energy + Delta-G solvation = -26533.046507 eV Core-core repulsion = 22544.434625 eV Total energy + Delta-G solvation = -3988.611882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68731 -42.30584 -41.42683 -40.06813 -36.41418 -35.61213 -35.20516 -33.13833 -32.55271 -31.43277 -31.00784 -30.81481 -28.71277 -26.49921 -25.22622 -24.79433 -23.45911 -22.46764 -21.94148 -21.61610 -20.97436 -19.64493 -18.70988 -18.32246 -18.20945 -17.28342 -17.02838 -16.84558 -16.67944 -16.39151 -16.30616 -15.98607 -15.64982 -15.37334 -15.10666 -14.68074 -14.54936 -14.50129 -14.23965 -13.87052 -13.71433 -13.69413 -13.20070 -12.95377 -12.74122 -12.32638 -12.13433 -12.08941 -11.83486 -11.73064 -11.44991 -11.35129 -10.86672 -10.72980 -10.52442 -10.37432 -9.81612 -9.51773 -9.18692 -8.34090 -6.47794 -0.74809 -0.33786 0.86641 1.08911 1.11025 1.30974 1.36861 1.38058 1.45555 1.52260 1.81667 2.11669 2.17566 2.36228 2.67335 2.89522 2.97915 3.22412 3.50021 3.66694 3.86498 3.87879 4.00883 4.05053 4.23413 4.32806 4.51502 4.55620 4.68077 4.70694 4.84236 4.85799 4.90055 5.00614 5.02616 5.05463 5.27272 5.56069 5.58996 5.77960 5.82007 5.98785 6.08940 6.25018 6.52478 6.55388 6.63937 6.83674 6.99779 7.22098 8.73999 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.001935 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.546388 B =14468.269873 C =15182.192929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.271 3.729 10 N -0.340 5.340 11 C 0.061 3.939 12 C -0.295 4.295 13 C 0.261 3.739 14 N -0.605 5.605 15 C 0.577 3.423 16 O -0.533 6.533 17 C 0.098 3.902 18 C -0.127 4.127 19 C 0.194 3.806 20 N -0.348 5.348 21 C 0.054 3.946 22 C -0.255 4.255 23 C 0.059 3.941 24 N -0.341 5.341 25 C -0.148 4.148 26 C 0.137 3.863 27 N -0.483 5.483 28 N -0.340 5.340 29 H 0.273 0.727 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.206 0.794 33 H 0.168 0.832 34 H 0.429 0.571 35 H 0.139 0.861 36 H 0.225 0.775 37 H 0.189 0.811 38 H 0.216 0.784 39 H 0.198 0.802 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.674 -23.400 -7.528 34.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.152 3.848 10 N -0.122 5.122 11 C -0.088 4.088 12 C -0.325 4.325 13 C 0.007 3.993 14 N -0.253 5.253 15 C 0.363 3.637 16 O -0.407 6.407 17 C -0.039 4.039 18 C -0.151 4.151 19 C 0.093 3.907 20 N -0.125 5.125 21 C -0.085 4.085 22 C -0.283 4.283 23 C -0.129 4.129 24 N -0.159 5.159 25 C -0.171 4.171 26 C -0.023 4.023 27 N -0.196 5.196 28 N -0.171 5.171 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.185 0.815 34 H 0.268 0.732 35 H 0.156 0.844 36 H 0.241 0.759 37 H 0.206 0.794 38 H 0.232 0.768 39 H 0.215 0.785 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 22.548 -21.248 -7.450 31.865 hybrid contribution 1.022 -0.692 0.495 1.330 sum 23.571 -21.939 -6.955 32.944 Atomic orbital electron populations 1.70001 1.07164 1.28719 1.49942 1.25739 0.95870 1.02715 0.93866 0.85286 0.78344 0.78345 0.78346 1.20025 1.19754 1.19447 1.21425 0.93368 0.90983 1.52837 0.93032 1.19397 0.85636 0.81403 0.98338 1.48898 1.23663 1.20323 1.19324 1.23190 1.00325 0.88585 0.96709 1.21726 1.02370 1.06598 1.01854 1.19388 0.91578 0.93593 0.94785 1.42248 1.28229 1.24476 1.30356 1.18187 0.82489 0.79498 0.83525 1.90719 1.62683 1.60971 1.26341 1.20244 0.95784 0.93486 0.94409 1.21596 0.96089 0.95803 1.01598 1.17837 0.93055 0.85158 0.94676 1.46070 1.22123 1.18067 1.26261 1.23655 0.88799 0.95054 1.00951 1.22150 1.04860 1.01391 0.99876 1.24821 0.92238 0.96485 0.99374 1.77576 1.25265 1.06209 1.06889 1.22576 1.03348 0.96561 0.94617 1.23512 0.88467 0.92007 0.98306 1.67593 1.13571 1.32807 1.05661 1.77279 1.04647 1.17841 1.17331 0.91813 0.95848 0.92062 0.77751 0.81487 0.73197 0.84359 0.75870 0.79426 0.76763 0.78484 0.76353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 13.29 21.45 0.28 -52.27 16 2 C 0.02 1.03 5.46 84.66 0.46 1.50 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.49 9.24 25.60 0.24 -31.26 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.32 6.26 85.63 0.54 14.86 16 10 N -0.34 -16.50 3.67 -351.85 -1.29 -17.79 16 11 C 0.06 2.48 11.43 83.52 0.95 3.43 16 12 C -0.29 -12.19 9.60 22.11 0.21 -11.98 16 13 C 0.26 11.23 8.10 133.36 1.08 12.31 16 14 N -0.60 -21.45 5.43 -309.87 -1.68 -23.13 16 15 C 0.58 19.34 7.78 86.88 0.68 20.02 16 16 O -0.53 -20.44 13.44 -3.84 -0.05 -20.49 16 17 C 0.10 2.55 6.75 41.85 0.28 2.83 16 18 C -0.13 -3.12 9.26 22.74 0.21 -2.91 16 19 C 0.19 3.39 6.72 38.35 0.26 3.64 16 20 N -0.35 -5.87 3.81 -186.86 -0.71 -6.59 16 21 C 0.05 0.45 10.85 83.40 0.91 1.36 16 22 C -0.26 -2.05 10.80 22.00 0.24 -1.81 16 23 C 0.06 0.77 12.02 85.26 1.02 1.79 16 24 N -0.34 -7.23 11.98 -56.98 -0.68 -7.91 16 25 C -0.15 -1.28 9.54 22.55 0.22 -1.06 16 26 C 0.14 1.47 11.17 84.75 0.95 2.41 16 27 N -0.48 -9.96 9.54 -185.13 -1.77 -11.72 16 28 N -0.34 -16.63 12.42 -54.49 -0.68 -17.30 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 3.14 8.07 -2.39 -0.02 3.12 16 32 H 0.21 6.54 8.06 -2.91 -0.02 6.51 16 33 H 0.17 6.67 5.91 -2.91 -0.02 6.65 16 34 H 0.43 13.53 8.15 -92.71 -0.76 12.77 16 35 H 0.14 4.02 7.39 -2.91 -0.02 4.00 16 36 H 0.22 -0.43 7.16 -2.91 -0.02 -0.45 16 37 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 38 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.20 -0.32 6.90 -2.91 -0.02 -0.34 16 40 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -81.64 359.49 4.05 -77.59 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.36 Total: 18.20 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 8.24 Total: 15.14 kcal Atomic # 7 Polarization: -130.20 SS G_CDS: -6.53 Total: -136.72 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -81.64 4.05 -77.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121602448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.651 kcal (2) G-P(sol) polarization free energy of solvation -81.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds