Wall clock time and date at job start Tue Mar 31 2020 20:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40084 * 125.97955 * 179.72179 * 13 12 11 15 15 C 1.34780 * 119.99515 * 0.02562 * 14 13 12 16 16 O 1.21568 * 120.00143 * 0.02562 * 15 14 13 17 17 C 1.47839 * 119.99777 * 179.97438 * 15 14 13 18 18 C 1.39690 * 120.07563 * 359.73149 * 17 15 14 19 19 C 1.38043 * 120.12644 * 179.74461 * 18 17 15 20 20 C 1.38124 * 120.28872 * 0.54837 * 19 18 17 21 21 C 1.39572 * 120.15801 * 359.70610 * 20 19 18 22 22 C 1.48004 * 120.06620 * 180.02562 * 21 20 19 23 23 N 1.31743 * 126.10134 * 180.02562 * 22 21 20 24 24 C 1.33003 * 109.76349 * 179.97438 * 23 22 21 25 25 N 1.30805 * 109.20011 * 359.97438 * 24 23 22 26 26 N 1.35250 * 126.10144 * 359.72737 * 22 21 20 27 27 H 0.97004 * 126.87275 * 0.02562 * 26 22 21 28 28 C 1.39262 * 119.86938 * 0.02562 * 21 20 19 29 29 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 30 30 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 32 32 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 33 33 H 1.08006 * 126.06772 * 359.97438 * 11 10 9 34 34 H 1.08003 * 126.06749 * 180.14269 * 12 11 10 35 35 H 0.96993 * 120.00318 * 180.02562 * 14 13 12 36 36 H 1.07994 * 119.93888 * 0.02562 * 18 17 15 37 37 H 1.08001 * 119.85574 * 180.27525 * 19 18 17 38 38 H 1.08001 * 119.91799 * 179.72193 * 20 19 18 39 39 H 1.07993 * 125.40172 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.14369 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9606 -5.4613 -1.3032 15 6 5.5271 -6.6021 -0.8623 16 8 5.0888 -7.1554 0.1275 17 6 6.6807 -7.1811 -1.5831 18 6 7.1813 -6.5502 -2.7245 19 6 8.2618 -7.0871 -3.3953 20 6 8.8475 -8.2561 -2.9500 21 6 8.3536 -8.8992 -1.8139 22 6 8.9831 -10.1514 -1.3382 23 7 8.6157 -10.8538 -0.2860 24 6 9.4034 -11.9179 -0.1582 25 7 10.2867 -11.9176 -1.1230 26 7 10.0346 -10.7818 -1.9095 27 1 10.5188 -10.5040 -2.7028 28 6 7.2675 -8.3604 -1.1289 29 7 3.2287 -3.8132 -0.9445 30 1 -0.4850 -0.8400 0.0004 31 1 0.6281 -2.5591 0.8866 32 1 0.6207 -2.5548 -0.8933 33 1 1.5912 -4.7503 1.7306 34 1 3.5586 -6.3459 1.0456 35 1 5.3100 -5.0201 -2.0931 36 1 6.7251 -5.6383 -3.0802 37 1 8.6481 -6.5933 -4.2747 38 1 9.6897 -8.6732 -3.4820 39 1 9.3255 -12.6643 0.6183 40 1 6.8815 -8.8546 -0.2496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153149170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:41 Heat of formation + Delta-G solvation = 165.662218 kcal Electronic energy + Delta-G solvation = -26465.992855 eV Core-core repulsion = 22477.753960 eV Total energy + Delta-G solvation = -3988.238894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53465 -40.96195 -40.04966 -38.55684 -35.03454 -33.85529 -33.35899 -32.94898 -31.76668 -30.82626 -30.04000 -29.42029 -26.46598 -24.89315 -24.29757 -23.16645 -22.84482 -21.55960 -21.26043 -20.54461 -19.70216 -18.84386 -17.58097 -17.21661 -16.69507 -16.57055 -15.96285 -15.88174 -15.41187 -15.25968 -15.09992 -14.72768 -14.23332 -14.12157 -14.00481 -13.80906 -13.29320 -13.16221 -12.82843 -12.48857 -12.33698 -12.19921 -11.87008 -11.81912 -11.18695 -10.84550 -10.77241 -10.71236 -10.53604 -10.53138 -10.19814 -10.17336 -9.76859 -9.57265 -9.13771 -9.03052 -8.60162 -8.26004 -7.57732 -6.60405 -4.34640 0.01143 0.52000 1.39270 2.02341 2.23691 2.55338 2.59288 2.83185 3.31305 3.35202 3.38885 3.43519 3.55116 3.67320 3.71301 4.10036 4.22458 4.30103 4.38542 4.42849 4.55468 4.61719 4.89394 4.99458 5.13415 5.40244 5.40440 5.61920 5.65386 5.69838 5.74352 5.77461 5.96671 6.10857 6.17842 6.36843 6.45995 6.47748 6.55935 6.71975 7.24874 7.41007 7.56410 7.66171 7.79286 8.07293 8.31853 8.48771 8.59027 9.33618 10.77245 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.001909 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.291063 B =14662.525890 C =15379.167892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.316 5.316 11 C 0.052 3.948 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.624 5.624 15 C 0.564 3.436 16 O -0.505 6.505 17 C -0.125 4.125 18 C -0.063 4.063 19 C -0.121 4.121 20 C -0.074 4.074 21 C -0.046 4.046 22 C 0.331 3.669 23 N -0.526 5.526 24 C 0.210 3.790 25 N -0.314 5.314 26 N -0.478 5.478 27 H 0.441 0.559 28 C -0.003 4.003 29 N -0.300 5.300 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.223 0.777 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.250 -19.318 -6.899 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.004 3.996 14 N -0.272 5.272 15 C 0.350 3.650 16 O -0.380 6.380 17 C -0.128 4.128 18 C -0.083 4.083 19 C -0.139 4.139 20 C -0.094 4.094 21 C -0.049 4.049 22 C 0.056 3.944 23 N -0.254 5.254 24 C -0.093 4.093 25 N -0.143 5.143 26 N -0.196 5.196 27 H 0.287 0.713 28 C -0.024 4.024 29 N -0.131 5.131 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.239 0.761 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.848 -17.583 -6.787 26.655 hybrid contribution 0.684 -1.812 -0.402 1.978 sum 19.532 -19.395 -7.188 28.449 Atomic orbital electron populations 1.70822 1.06780 1.30476 1.45945 1.25926 0.96321 1.02822 0.93141 0.83382 0.74668 0.74323 0.76979 1.21196 1.21252 1.20714 1.22125 0.95406 0.90395 1.56700 0.91784 1.19784 0.86306 0.82816 0.98059 1.48798 1.23278 1.19515 1.18150 1.22579 1.00445 0.90082 0.96695 1.21552 1.02112 1.06331 1.01458 1.19035 0.91440 0.94336 0.94743 1.42272 1.29920 1.24726 1.30255 1.18026 0.82708 0.79943 0.84334 1.90751 1.62164 1.59985 1.25054 1.19786 0.98009 0.97422 0.97576 1.21627 0.94896 0.98814 0.92967 1.20995 0.96297 0.95798 1.00806 1.21262 0.98773 0.95144 0.94244 1.17443 0.98042 0.91932 0.97516 1.22158 0.87761 0.93994 0.90508 1.70739 1.29344 1.07237 1.18114 1.26080 0.89468 0.96363 0.97425 1.78078 1.24704 1.03863 1.07633 1.48075 1.26549 1.19455 1.25537 0.71320 1.21361 0.90942 0.92072 0.97987 1.77350 1.03520 1.16106 1.16115 0.92228 0.93554 0.94701 0.81379 0.81995 0.75343 0.84533 0.84134 0.85495 0.76100 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.65 55.43 0.76 -25.32 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.66 29.90 -169.99 -5.08 19.58 16 4 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -16.87 9.24 -34.44 -0.32 -17.19 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.19 5.57 -5.19 -0.03 6.17 16 10 N -0.32 -7.25 3.67 -62.56 -0.23 -7.48 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.51 9.60 -39.83 -0.38 -5.89 16 13 C 0.26 5.04 8.11 -154.44 -1.25 3.78 16 14 N -0.62 -9.22 5.40 -11.99 -0.06 -9.29 16 15 C 0.56 7.90 7.74 -12.33 -0.10 7.80 16 16 O -0.51 -8.63 13.46 5.31 0.07 -8.56 16 17 C -0.12 -1.27 5.87 -105.02 -0.62 -1.88 16 18 C -0.06 -0.45 9.54 -39.11 -0.37 -0.82 16 19 C -0.12 -0.61 10.02 -39.69 -0.40 -1.01 16 20 C -0.07 -0.38 9.69 -39.13 -0.38 -0.76 16 21 C -0.05 -0.37 5.87 -105.02 -0.62 -0.99 16 22 C 0.33 2.97 7.82 -155.45 -1.22 1.75 16 23 N -0.53 -5.60 10.84 -12.48 -0.14 -5.73 16 24 C 0.21 1.83 13.01 -91.94 -1.20 0.63 16 25 N -0.31 -2.85 12.79 29.26 0.37 -2.48 16 26 N -0.48 -3.44 7.34 32.25 0.24 -3.20 16 27 H 0.44 1.58 8.11 -182.34 -1.48 0.11 16 28 C 0.00 -0.03 9.24 -38.79 -0.36 -0.38 16 29 N -0.30 -6.78 12.42 31.43 0.39 -6.39 16 30 H 0.27 7.53 7.22 -40.82 -0.29 7.24 16 31 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 32 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 33 H 0.17 2.68 8.06 -52.48 -0.42 2.26 16 34 H 0.16 3.04 5.91 -52.48 -0.31 2.73 16 35 H 0.41 4.74 6.85 -40.82 -0.28 4.46 16 36 H 0.14 0.73 6.39 -52.49 -0.34 0.39 16 37 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 38 H 0.13 0.25 7.19 -52.49 -0.38 -0.13 16 39 H 0.22 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.16 1.82 7.43 -52.49 -0.39 1.43 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -36.40 356.03 -10.61 -47.01 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.77 Total: 3.94 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -7.52 Total: -7.45 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 1.33 Total: -59.88 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.56 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.40 -10.61 -47.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153149170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.671 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds