Wall clock time and date at job start Tue Mar 31 2020 20:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40084 * 125.97955 * 179.72179 * 13 12 11 15 15 C 1.34780 * 119.99515 * 0.02562 * 14 13 12 16 16 O 1.21568 * 120.00143 * 0.02562 * 15 14 13 17 17 C 1.47839 * 119.99777 * 179.97438 * 15 14 13 18 18 C 1.39690 * 120.07563 * 359.73149 * 17 15 14 19 19 C 1.38043 * 120.12644 * 179.74461 * 18 17 15 20 20 C 1.38124 * 120.28872 * 0.54837 * 19 18 17 21 21 C 1.39572 * 120.15801 * 359.70610 * 20 19 18 22 22 C 1.48004 * 120.06620 * 180.02562 * 21 20 19 23 23 N 1.31743 * 126.10134 * 180.02562 * 22 21 20 24 24 C 1.33003 * 109.76349 * 179.97438 * 23 22 21 25 25 N 1.30805 * 109.20011 * 359.97438 * 24 23 22 26 26 N 1.35250 * 126.10144 * 359.72737 * 22 21 20 27 27 H 0.97004 * 126.87275 * 0.02562 * 26 22 21 28 28 C 1.39262 * 119.86938 * 0.02562 * 21 20 19 29 29 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 30 30 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 32 32 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 33 33 H 1.08006 * 126.06772 * 359.97438 * 11 10 9 34 34 H 1.08003 * 126.06749 * 180.14269 * 12 11 10 35 35 H 0.96993 * 120.00318 * 180.02562 * 14 13 12 36 36 H 1.07994 * 119.93888 * 0.02562 * 18 17 15 37 37 H 1.08001 * 119.85574 * 180.27525 * 19 18 17 38 38 H 1.08001 * 119.91799 * 179.72193 * 20 19 18 39 39 H 1.07993 * 125.40172 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.14369 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9606 -5.4613 -1.3032 15 6 5.5271 -6.6021 -0.8623 16 8 5.0888 -7.1554 0.1275 17 6 6.6807 -7.1811 -1.5831 18 6 7.1813 -6.5502 -2.7245 19 6 8.2618 -7.0871 -3.3953 20 6 8.8475 -8.2561 -2.9500 21 6 8.3536 -8.8992 -1.8139 22 6 8.9831 -10.1514 -1.3382 23 7 8.6157 -10.8538 -0.2860 24 6 9.4034 -11.9179 -0.1582 25 7 10.2867 -11.9176 -1.1230 26 7 10.0346 -10.7818 -1.9095 27 1 10.5188 -10.5040 -2.7028 28 6 7.2675 -8.3604 -1.1289 29 7 3.2287 -3.8132 -0.9445 30 1 -0.4850 -0.8400 0.0004 31 1 0.6281 -2.5591 0.8866 32 1 0.6207 -2.5548 -0.8933 33 1 1.5912 -4.7503 1.7306 34 1 3.5586 -6.3459 1.0456 35 1 5.3100 -5.0201 -2.0931 36 1 6.7251 -5.6383 -3.0802 37 1 8.6481 -6.5933 -4.2747 38 1 9.6897 -8.6732 -3.4820 39 1 9.3255 -12.6643 0.6183 40 1 6.8815 -8.8546 -0.2496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153149170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:40 Heat of formation + Delta-G solvation = 142.651915 kcal Electronic energy + Delta-G solvation = -26466.990656 eV Core-core repulsion = 22477.753960 eV Total energy + Delta-G solvation = -3989.236696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.16441 -42.37256 -41.14511 -39.45074 -36.50485 -35.63009 -34.13496 -33.60763 -32.84769 -32.06393 -31.06983 -30.69911 -28.26003 -25.89848 -25.19780 -24.60284 -23.72361 -22.70470 -21.99496 -21.94215 -20.92402 -19.67729 -19.22566 -18.51060 -18.05675 -17.22652 -17.01097 -16.67091 -16.56392 -16.38843 -15.88006 -15.83825 -15.62551 -15.45039 -15.10704 -14.94229 -14.63785 -14.23150 -13.96199 -13.80632 -13.71465 -13.39115 -13.22738 -12.80159 -12.60096 -12.44477 -12.07600 -11.96598 -11.70615 -11.38342 -11.36247 -11.19993 -11.08160 -11.00637 -10.68312 -10.18654 -9.86256 -9.74286 -9.22838 -8.77255 -6.55274 -0.58466 -0.17455 0.78336 0.96566 1.20487 1.46930 1.51584 1.51924 1.59237 1.79197 1.86362 2.18027 2.21586 2.49465 2.76532 2.89513 3.01950 3.33186 3.58676 3.76086 3.85379 3.88896 3.97137 4.07022 4.13656 4.31492 4.46263 4.55831 4.68449 4.78846 4.81514 4.89057 5.00835 5.03514 5.15623 5.18076 5.20943 5.37377 5.55283 5.64437 5.78723 5.91699 6.02262 6.15275 6.26543 6.41497 6.86205 6.94663 6.98538 7.20427 8.59132 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.001909 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.291063 B =14662.525890 C =15379.167892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.123 2.877 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.621 4.621 8 H 0.046 0.954 9 C 0.258 3.742 10 N -0.342 5.342 11 C 0.057 3.943 12 C -0.292 4.292 13 C 0.267 3.733 14 N -0.617 5.617 15 C 0.565 3.435 16 O -0.543 6.543 17 C -0.143 4.143 18 C -0.058 4.058 19 C -0.109 4.109 20 C -0.052 4.052 21 C -0.054 4.054 22 C 0.327 3.673 23 N -0.565 5.565 24 C 0.203 3.797 25 N -0.331 5.331 26 N -0.463 5.463 27 H 0.456 0.544 28 C -0.017 4.017 29 N -0.340 5.340 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.202 0.798 34 H 0.169 0.831 35 H 0.425 0.575 36 H 0.155 0.845 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.248 0.752 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.873 -19.389 -8.630 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.943 3.057 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.659 4.659 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.123 5.123 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.013 3.987 14 N -0.267 5.267 15 C 0.354 3.646 16 O -0.419 6.419 17 C -0.146 4.146 18 C -0.077 4.077 19 C -0.126 4.126 20 C -0.072 4.072 21 C -0.057 4.057 22 C 0.051 3.949 23 N -0.294 5.294 24 C -0.099 4.099 25 N -0.160 5.160 26 N -0.184 5.184 27 H 0.306 0.694 28 C -0.038 4.038 29 N -0.171 5.171 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.219 0.781 34 H 0.186 0.814 35 H 0.264 0.736 36 H 0.172 0.828 37 H 0.199 0.801 38 H 0.186 0.814 39 H 0.264 0.736 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.506 -17.681 -8.555 29.126 hybrid contribution -0.013 -1.963 0.085 1.965 sum 21.493 -19.644 -8.470 30.325 Atomic orbital electron populations 1.70917 1.07461 1.30213 1.47376 1.27281 0.96443 1.06095 0.92094 0.82841 0.73898 0.70948 0.77973 1.19501 1.20356 1.20100 1.22300 0.94702 0.92046 1.56806 0.93578 1.19450 0.86416 0.82770 0.97455 1.48584 1.24006 1.20124 1.19634 1.23176 1.00563 0.88757 0.96670 1.21753 1.02260 1.06559 1.01729 1.19376 0.91630 0.93191 0.94521 1.42371 1.28737 1.25012 1.30552 1.18722 0.83026 0.78996 0.83872 1.90715 1.63479 1.60852 1.26879 1.19440 0.97620 0.98275 0.99257 1.21896 0.95237 0.99036 0.91536 1.21455 0.94746 0.95237 1.01181 1.21751 0.98763 0.94323 0.92389 1.17491 0.97724 0.91964 0.98567 1.22259 0.88080 0.94169 0.90378 1.70723 1.30738 1.08397 1.19541 1.26644 0.88903 0.96449 0.97925 1.78021 1.25143 1.04713 1.08091 1.47974 1.26029 1.18661 1.25707 0.69398 1.21168 0.92266 0.92463 0.97927 1.77266 1.04640 1.17921 1.17275 0.92941 0.92830 0.96386 0.78116 0.81408 0.73554 0.82793 0.80129 0.81426 0.73617 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 13.65 21.45 0.29 -53.31 16 2 C -0.02 -1.08 5.46 84.65 0.46 -0.62 16 3 Si 1.12 49.20 29.90 68.60 2.05 51.26 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.62 -34.99 9.24 25.60 0.24 -34.76 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 13.20 5.57 85.64 0.48 13.67 16 10 N -0.34 -15.97 3.67 -351.84 -1.29 -17.26 16 11 C 0.06 2.23 11.43 83.52 0.95 3.18 16 12 C -0.29 -11.48 9.60 22.11 0.21 -11.27 16 13 C 0.27 10.57 8.11 133.35 1.08 11.65 16 14 N -0.62 -18.14 5.40 -310.12 -1.67 -19.82 16 15 C 0.56 16.02 7.74 86.78 0.67 16.69 16 16 O -0.54 -19.26 13.46 -3.93 -0.05 -19.31 16 17 C -0.14 -2.80 5.87 -20.12 -0.12 -2.92 16 18 C -0.06 -0.65 9.54 22.57 0.22 -0.43 16 19 C -0.11 -0.58 10.02 22.20 0.22 -0.36 16 20 C -0.05 -0.32 9.69 22.56 0.22 -0.10 16 21 C -0.05 -0.78 5.87 -20.12 -0.12 -0.90 16 22 C 0.33 5.49 7.82 136.87 1.07 6.56 16 23 N -0.57 -12.05 10.84 -193.38 -2.10 -14.15 16 24 C 0.20 3.44 13.01 180.81 2.35 5.80 16 25 N -0.33 -5.59 12.79 -61.34 -0.78 -6.38 16 26 N -0.46 -5.73 7.34 -51.88 -0.38 -6.11 16 27 H 0.46 1.85 8.11 -213.10 -1.73 0.12 16 28 C -0.02 -0.34 9.24 22.78 0.21 -0.13 16 29 N -0.34 -15.65 12.42 -54.48 -0.68 -16.33 16 30 H 0.26 14.99 7.22 -92.71 -0.67 14.32 16 31 H 0.05 2.63 7.94 -2.39 -0.02 2.61 16 32 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 33 H 0.20 6.25 8.06 -2.91 -0.02 6.22 16 34 H 0.17 6.42 5.91 -2.91 -0.02 6.40 16 35 H 0.42 9.45 6.85 -92.71 -0.63 8.81 16 36 H 0.15 1.15 6.39 -2.91 -0.02 1.13 16 37 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 38 H 0.17 -0.33 7.19 -2.91 -0.02 -0.35 16 39 H 0.25 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.13 3.29 7.43 -2.91 -0.02 3.27 16 Total: -1.00 -82.10 356.03 2.42 -79.69 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -1.12 Total: 15.65 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 8.15 Total: 6.06 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.61 Total: -133.34 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.26 kcal Total: -82.10 2.42 -79.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153149170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.339 kcal (2) G-P(sol) polarization free energy of solvation -82.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds